Information report for PSME_00008383-RA
Gene Details
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Functional Annotation
- Refseq: XP_006852278.1 — lysine-specific demethylase REF6
- Refseq: XP_020527617.1 — lysine-specific demethylase REF6
- TrEMBL: W1Q0V7 — W1Q0V7_AMBTC; Uncharacterized protein
- STRING: ERN13745 — (Amborella trichopoda)
- GO:0009741 — Biological Process — response to brassinosteroid
- GO:0009826 — Biological Process — unidimensional cell growth
- GO:0033169 — Biological Process — histone H3-K9 demethylation
- GO:0048577 — Biological Process — negative regulation of short-day photoperiodism, flowering
- GO:0048579 — Biological Process — negative regulation of long-day photoperiodism, flowering
- GO:0005634 — Cellular Component — nucleus
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: CEY00_Acc03787
- Cajanus cajan: C.cajan_24710
- Citrullus lanatus: Cla013758, Cla97C08G150370
- Cucumis melo: MELO3C019813P1, MELO3C019813
- Daucus carota: DCAR_015295
- Glycine max: Glyma.10G209600.2.p, Glyma.10G209600.1.p, Glyma.10G209600
- Gossypium hirsutum: Gohir.A09G244800
- Populus trichocarpa: Potri.010G224700.1, POPTR_010G224700v3
- Rosa chinensis: RchiOBHm_Chr1g0362971
- Vitis vinifera: GSVIVT01016246001
Sequences
CDS Sequence:
- >PSME_00008383-RA|Pseudotsuga_menziesii|C2H2|PSME_00008383-RA
ATGATGCGCTCGACAAGTTCAGAGTACGATTGCCGACGAAGTTGGAGAGGCAATGATGGTGTGGTAGATTCCTTCTATTGTAACCCTGCAGGGAGAGTTCATAAGATGGGGGATGGTGAGGTTCTGCCATGGCTGAAAGCATTGCCATTGGCACCAGAGTACCGGCCTACAGAGGCCGAATTTGCAGACCCAATTGCATACATTTTGAAGATAGAGAAGGAAGCTTGTCAGTATGGCATTTGCAAGATAATTCCTCCAATACCCAAGGCACCGAAAAAGGTCGTCATTGCAAATCTCAATCGCTGTTTGGGGAAGTTGCAGAGCAACAATAACAGCAGCAGCGACACAGTTGCTGTTGCTGCTGGAGCACCACTTAATGTTAACGGGTCCAATGCCTATACAGAGTTCTGCAAAGGCACCAATGTTGCGAAATTCACTACTCGCCAACAGCAAATCGGATGGAGTCCCAAGAAGGCCCGAGGAGGCCCTCTGCAAACCGTGGTGCAAAAATCAGTATGGGAGAGTGGGGATACCTACACACTGGAACAATTTGAGGCCAAGGCAAAGATGTTTGCAAGGTCTAGACTGAAATCCTCAAGGGACGTTGCTCCTCTGGTGGCAGAGACATTGTTCTGGAGGGCAACTGCTGATAAGCCTTTCACTGTAGAGTATGCCAATGATATCCCTGGAACTGCTTTTGGAGAACCCGATGAGAAATTTCTATCAGCATCAACTGCACCACAGCAGAGAAAAATGCAGAGCCAGAGGAAACGCAAGCAAAAAGAGGGCTCTCAGAATTCATGTTTGGACCTCTCAAACACTGCTTGGAATATGCGGATTGCCTCACGATCACATGGATCATTGCTCCGTTACATGCCTGATGAGGTGCCTGGAGTTACTTCACCAATGGTTTACATTGCTATGTTGTTCAGCTGGTTTGCTTGGCATGTGGAGGACCATGATCTGCACAGTCTGAACTATTTGCATATGGGGGCTTCGAAAACTTGGTATGCTGTGCCCGGAGATGCAGCTCCTGCTTTTGAGGAAGTGATCAGACGTGATGGTTATGGTGGCCATGTTAATCCAATAGTTGCACTTGGAATGTTGGCTGAGAAGACAACTGTTATGTCACCAGAAGTATTGATAGCTGCAGGTGTTCCTTGTTGCAGGCTGGTGCAGAATGCAGGGGAATTTGTTGTTACTTTCCCAAGAGCATATCATTTAGGGTTCAGTCACGGGTTCAATTGTGGAGAAGCAGCTAATCTGGCAACCCCTGATTGGCTTAAAGTGGCAAAAGAAGCTGCAGTCCGTCGAGCAGCTATGGAGTATCTTCCTATGCTTTCGCATCAGCAACTTCTATATTTTCTTGCAATGGATTTCAATTCAAGGATACCTGAGGATGTAGCATCTCAACCCCGCAGTCACCGATTAAAATACCGGCAGAAAGGCGAAGGGGAAATGGTACTCAAGAGAAGTTTTGTAAATGATGTGATCGAGAACAATCAACTACTTAGCATCCTTCTCCAGAAGTCATCCACTCGCCATGCCATTGTATGGAATTCTGCAAATGTCTCCTGTGACCTTCCATCTTCGCCTTTGTGTTTCTCTACACCTGAAACAAAATACAACGCAACATCATCTGATGTGAGCAGATTGAAGGTATTAGCATTGCAATCAGATACTTTGGTCAATGTTAGCACAGCACCAGGTAGAAATGAAGACATGTTTATAGAAAGCTCCTCAAAAATTGTAGAAGACGCTTCAATCACAGCAGGAATTGGTGTTTCCTTGTCCAACAATGACAAGAATAAAAATCTGTTATTTTATAATAATTCCCGGTTTCCATCATCATGTACTGACAATATTCATATACAAAGGCAAGCATTTAAGAGGGGAACATCTTCCACCAACATGGACCGAGATTCAGGTTCATTGGCCTGCATTGCATGTGGAGTTTTGGGCTTTGCGAGCATGGTTGTAATACAACCTTGTCAGGAAGCAGCTAGGAAACTCTTGCCTTCTTACAATAAACTTGACCAGAAATATTTGGAGACTTTTGGCACAGGGAGTGTCAGCTGTGATGTTGCTTGTGGTGGAATTACAGCTACATATTCACAATCACCAATTATAGATGAAAAGATGGGTATGGACATTGAAAATGTACAACTTGATAACCATGGAGCTGCATTAGCATCTACTGCAAAAATAATGGCATATACCAATTTGTCAGATGAGGAAGGTCACAAACACAATCTTGTAGATTTTCCAAATTTGTCCATCATGAAAAACAATTTGGCTACAGACCTCTGCATGAATAATTTATCAAATGACATAATGGCATCATGGCAATTGAGAGCTAAAGAAAACAATGCAGTAGTTTGTTCAACGAATGCATTTGTGACTTGTGAGGATAATGCTTGTGAAGGGCATTCAAAGTACTTGTCTTCTGCTATTTGTCTAGAGAACTCACCTGGTACATACAATGAAAAACACACACATGCTTATGGAGTTGTTGCTGAGAATATCAATTCAGTAGATATTGGGCATTCTGAATCAAAGAAGTGGAAAGAATCCCCAAATTTATCAACTTTGAATGATGCAAACATGCCAAATTCATTCTCTGTTTGCAGTGCTTCAGAAATGCCTCAAGTTTCATCTCTAGATCTTCTGGCAGTTACTTATGGTGATTCAGTAGATTCTGATGAGGATGATGATGCAAGTCAAGCAGCTAAAAAAGATTTTCTTTGTGGACTGCCTAATAGTGCAAGAACTTGTGAAAATGGTCACAAGCTTTCTGGCATTGCAGATGCCACCGGAACTGATGTTTGTGCCCAATGTCTGTCAGGTCATCTTTCTTCCTCCACATTAGTTGCAAAAATAAAGACAGAAGAAACTCATGATGACCCTATATCAGCAGGAACTGAATCAGAATATAGATCTTCATTTTTGTATACAGGCCCTAAGGATTCTTTAAATATTTCAATGGGAAAGAACAAAGATAACATGGGAGAAATGTCAAACAATACACCAAACCAATCCCCAAAAAGAAATATAACATGCCACACATATGTTGCTGACTGTCAGAAGAGCTCTCATGAAGAACTCAATGTTTGTGAGACTCAGATTTCTGTTATACTAGAACGAAATCAGAAACAGAAAGGTATTTTGACTCCACCAGTATCTGAAGACAGTAAAGACCTTACAGGCTCAATCAATTATTCTACTGGAGAGAATGAATGTAAGTTAGTTTCAACAGAAGCATGTGCAAACAAATCTATCTTAGAGGGAAAGGTGGTCTCTACATCTTTTACCACACCTTCTGAAGTGTTAGGCAGTGAAGTTGGTAAATCAGACATTGATGCCCATAGATTCTCTGAAGCATTCCCTGCTTCTGATCACCACTCTGGGATTCTAGTTCGATTGGGCGATGAATTAAAAGAGTCAAATGTAAGTGATAAAGGCAATACTTATTACCTATCAGTAAGAAAAAACAAAACACAGACATGTCATCTTGCAGGAAATACCATGGGCGGTTTTACAAAGACAGATTCATTGAAGGGAAACATTGAAGATACTCCAATAGAGAGCACAAATGCAGCATCTTTATGGAAACCTTCCAAAGGATTCCTAAGACCACAAGTGTTCTGCCTTCAGCATGCTATAGAGATAGAGCAGCAATTGCAGTCAATCGGAGGTGCACATATGCTGCTTCTATGTCACTCAAATTATCCTTCAATAGAAAAGAAAGCACGATCGCTGGCTTCTGAAATTGGTAATAACTACTTATGGAAGGATATTCCATTAAGGGATGCAGCTACTGAAGATCTAGAAGTAATTCATTCAGCTATTGATGATGAAGGGGGTTATGAACTTGCAAGCACCGATTGGACAGTGTGTTTGGACATGAGTTTGCATCATAGCATCAATCTTAGCAAATCACCCCTGTATAGCAAGCAGATACCATACAATCCAGTTCTGAACGCATTGTTTTTTAGCAGCTCTTTGGATAATTGTTCTCCTAACAGTGCATATGGATCAGAGCGGCAATATGATTCCACGAAGCAAAGAAAGAAAAGCAAGCATAAAAAGATAACTGTTGCTGGAAAATGGTGTGGAAGAGTTTGGATGGTACATCCATACTTGGCAAGTGATAAATTTCAGCCATCAGCTTCTTTTGGAACCATAAAAACCAGAAAATTAGAAGATGAAGTCAGCCAAGAGCAAGGGCATCCTTGGAAACACATGATTGAGGAGGCAGATTGTAAGCCCATAGTAAAGCCAAAAAGTACCATGATTCCAGATGAGCAAATTTTAATGCCCCTTTTGGGAGCTCCTGATGCTATGACTCCAGATGAGCAAATTTCAATACCCCTATCGGGAGGTCCTGATGCTATGATTTCAGATGAGCAAATTTCAAAGCCCCTTTTGGGAGGTCCTGATATTGAACAAGTTTCATCTGCAAATTTAAGGGCCATCGCTGAAGAAAGTTCAGCATGTCAAGAAGGTGGGCAACCTCAACAATACACCACAGTTCAGAATACAGATTATAAACCTGAGTTAGAAAAGAGAACAACATTTAGTCGCAATGAGCACTGTTTGATTACTTACACAAAAAACACACAAAAGGTTTCAGTTTCAAGAAAATTGACAATGAAGAGAAAATTTCACTCAGGACAAACATTTGATATTAATAAGAAAGTTAAGCTTTTGGAATGTACAACACTGGACTCCGATGGGAGAACTCCATTACCCAGCTCTCCAATCAATGTTCAAGGAGATTCTATGATGGTGAGTGATGAAGGCTTTTCTGCATATTCAAAGGGAGAACTAGCAGCCAAACCCACTGCATCATGTCTAGCGGGTGAGAAGCCAAAACACAAAGTAGTAGATAAAGATTATGCTCAGGATAAGGCTGATCACACTCAAGAGAAGATGGTTGAGGTAGACATAGAAATCCAGTACACACATGGAACTAATGCACAAAATAAAGGTTGTATTTCCCAATGGACTAGGAACAGAAACTTGCTTGATTCATGTGACACACTTGAGAAAAAAGAAACTAAATGCTCTGTAAGAAGCAAAAGGAATATAGGGCTGAAAGATGGAAACAAGGTCCATTCTGCTGAAGGTTCTCATGTCTCAACCTCAGAAAACACTGTCGTCAGCAAGTCACAAATTGTTTCACAAAACTCTTCTCCCACAGGTGAGCTTGAAGGTGGCCCAAGTACAAGGCTAAGGTCAAGATCATTAAGAGATAGGGTGGAGGTGGTGAGTAAAGTTGCAGAAAAGGCATTGTTACCACAGCCAGCCTCCACTAAGAAAATTTCAAGGGGACAGAAAAAGACAAAAACTGCACCATCAAAGAATGCAGATAAAAAAAATGGATATCAGTGTGACACGGAAGGATGTACCATGAACTTTACAACAAAACAGGATCTACAGTTGCACAAACGTAACACATGCCCTATTAAAGGATGTGGAAAACATTTTATTTCACATAAATACCTTTTGCACCACCGTCGTGTACACCTTGATGACAGGCCCCTGACTTGTCCTTGGAAAGGTTGTGGAAAGACTTTCAAGTGGGCATGGGCAAGAACTGAACATTCGCCACAAGCGGAAAACTGGCCATCCAAAGCAATAAAAGAGCTTCCTGATAAAATCTTTCAGGAACTCTTTGTTTCTTGTCTCATTTGCTGA
Protein Sequence:
- >PSME_00008383-RA|Pseudotsuga_menziesii|C2H2|PSME_00008383-RA
MMRSTSSEYDCRRSWRGNDGVVDSFYCNPAGRVHKMGDGEVLPWLKALPLAPEYRPTEAEFADPIAYILKIEKEACQYGICKIIPPIPKAPKKVVIANLNRCLGKLQSNNNSSSDTVAVAAGAPLNVNGSNAYTEFCKGTNVAKFTTRQQQIGWSPKKARGGPLQTVVQKSVWESGDTYTLEQFEAKAKMFARSRLKSSRDVAPLVAETLFWRATADKPFTVEYANDIPGTAFGEPDEKFLSASTAPQQRKMQSQRKRKQKEGSQNSCLDLSNTAWNMRIASRSHGSLLRYMPDEVPGVTSPMVYIAMLFSWFAWHVEDHDLHSLNYLHMGASKTWYAVPGDAAPAFEEVIRRDGYGGHVNPIVALGMLAEKTTVMSPEVLIAAGVPCCRLVQNAGEFVVTFPRAYHLGFSHGFNCGEAANLATPDWLKVAKEAAVRRAAMEYLPMLSHQQLLYFLAMDFNSRIPEDVASQPRSHRLKYRQKGEGEMVLKRSFVNDVIENNQLLSILLQKSSTRHAIVWNSANVSCDLPSSPLCFSTPETKYNATSSDVSRLKVLALQSDTLVNVSTAPGRNEDMFIESSSKIVEDASITAGIGVSLSNNDKNKNLLFYNNSRFPSSCTDNIHIQRQAFKRGTSSTNMDRDSGSLACIACGVLGFASMVVIQPCQEAARKLLPSYNKLDQKYLETFGTGSVSCDVACGGITATYSQSPIIDEKMGMDIENVQLDNHGAALASTAKIMAYTNLSDEEGHKHNLVDFPNLSIMKNNLATDLCMNNLSNDIMASWQLRAKENNAVVCSTNAFVTCEDNACEGHSKYLSSAICLENSPGTYNEKHTHAYGVVAENINSVDIGHSESKKWKESPNLSTLNDANMPNSFSVCSASEMPQVSSLDLLAVTYGDSVDSDEDDDASQAAKKDFLCGLPNSARTCENGHKLSGIADATGTDVCAQCLSGHLSSSTLVAKIKTEETHDDPISAGTESEYRSSFLYTGPKDSLNISMGKNKDNMGEMSNNTPNQSPKRNITCHTYVADCQKSSHEELNVCETQISVILERNQKQKGILTPPVSEDSKDLTGSINYSTGENECKLVSTEACANKSILEGKVVSTSFTTPSEVLGSEVGKSDIDAHRFSEAFPASDHHSGILVRLGDELKESNVSDKGNTYYLSVRKNKTQTCHLAGNTMGGFTKTDSLKGNIEDTPIESTNAASLWKPSKGFLRPQVFCLQHAIEIEQQLQSIGGAHMLLLCHSNYPSIEKKARSLASEIGNNYLWKDIPLRDAATEDLEVIHSAIDDEGGYELASTDWTVCLDMSLHHSINLSKSPLYSKQIPYNPVLNALFFSSSLDNCSPNSAYGSERQYDSTKQRKKSKHKKITVAGKWCGRVWMVHPYLASDKFQPSASFGTIKTRKLEDEVSQEQGHPWKHMIEEADCKPIVKPKSTMIPDEQILMPLLGAPDAMTPDEQISIPLSGGPDAMISDEQISKPLLGGPDIEQVSSANLRAIAEESSACQEGGQPQQYTTVQNTDYKPELEKRTTFSRNEHCLITYTKNTQKVSVSRKLTMKRKFHSGQTFDINKKVKLLECTTLDSDGRTPLPSSPINVQGDSMMVSDEGFSAYSKGELAAKPTASCLAGEKPKHKVVDKDYAQDKADHTQEKMVEVDIEIQYTHGTNAQNKGCISQWTRNRNLLDSCDTLEKKETKCSVRSKRNIGLKDGNKVHSAEGSHVSTSENTVVSKSQIVSQNSSPTGELEGGPSTRLRSRSLRDRVEVVSKVAEKALLPQPASTKKISRGQKKTKTAPSKNADKKNGYQCDTEGCTMNFTTKQDLQLHKRNTCPIKGCGKHFISHKYLLHHRRVHLDDRPLTCPWKGCGKTFKWAWARTEHSPQAENWPSKAIKELPDKIFQELFVSCLIC