Information report for PSME_00002384-RA
Gene Details
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Functional Annotation
- GO:0034968 — Biological Process — histone lysine methylation
- GO:0005634 — Cellular Component — nucleus
- GO:0005515 — Molecular Function — protein binding
- GO:0008270 — Molecular Function — zinc ion binding
- GO:0018024 — Molecular Function — histone-lysine N-methyltransferase activity
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: CEY00_Acc06079
- Glycine max: Glyma.11G062100, Glyma.01G180100, Glyma.16G143100, Glyma.02G060500
- Gossypium hirsutum: Gohir.D03G018200, Gohir.A02G162200, Gohir.A02G162100, Gohir.D03G018300
- Juglans regia: Jr12_01700, Jr12_01690, Jr07_03090
- Manihot esculenta: MANES_13G134300
- Populus trichocarpa: POPTR_007G033000v3, POPTR_005G129800v3
- Prunus avium: Pav_sc0000348.1_g900.1.mk
- Prunus persica: PRUPE_7G146600
- Rosa chinensis: RchiOBHm_Chr2g0103021
- Vitis vinifera: VIT_04s0023g00980
Sequences
CDS Sequence:
- >PSME_00002384-RA|Pseudotsuga_menziesii|C2H2|PSME_00002384-RA
GAATTAGTAAATGCAGTTTTGTGGGATGATGTTGCAAAGCTTTGGGATGCCCCTGTTCAACCTAACCTGGGTTCAGATTGGAAAACATGGAAACAAGAGTGCATGAAATGGTTTTCAGTATCTAATCATCATCTGTCAAAATCTGGATTAGAGGGAGAAAATGAGAAGGCGGCCCATTTTGAAGATATGGACATTGCAAAGTCCAAAGTCAGCAGGAAACGACCAAAACTTGAAATTCGTCGTGGGGAAACACGTTCCTCTGAAATAACAGATGTGAATGGATCTGAGCTTCAAGCTCATATGGAAATGGTTGATTCTATTATTTCAAATCAACAAGAACTCAGTACATCGAGTCAAGGGCTATCAGTTTGTAGTGTAGAAGGGCTAACAAACAGCTCTATTGAGGATGTGGCTCAGGTTAACACAAGGAATAAAGTTGGGGATGATAGTGGATATCAGATAGTTCCTTATTCAGGTGGAAATCAGGAAACACCCTTAACAGAATACAAGTCAAGTAGCAAGAATTATCTAATGGGCAGTAGCGAGCACAAGCATCAACAATGTTCGGCTTTCATTGAAACAAAGGGAAGACAATGCAGCCGGTGGGCAAAAGATGGAGGCATGTATTGTTGTATGCATTTAAGTTTTGATTCTCCTGATAATGCTCGCAGAGTGGAGCAGGTTGGATCTCTTTCCCAGTCTTCAATTTGCCAAGGTATGACAATATATGGAAGGAGGTGTACTCATCGATGTAAAAATGGATCATCTTTTTGTCGTAAGCATTTGCTTCAAGATGGTCAAACACCAGATAGCGATAGGACACCAAGTTCAAATACATCAGTTAATAGCAATAAGAGAGTGAGGCTATCAGTTGAGGGACAACATTTAGTCAAGAATCAACCATCAGATACACCCTTACAAGACTTGCATGACGTATCAGAGAGATCAGCTCAGAGGTGGAGCAATGATGGTGGCAACATTCGAAGGCATCAACAATTTGAATCCCAATCTCAAGATTTTGTGGTGCAAGACAAGTCTTCTGCTAAGGGTCTTCACCAGAGTGTAAATTGGTCCCGTTGCATTGGATGGTGTCGCAACAATAGTGGTCAGTGTTCTCATAGGGCAAAGCCAGGTTCTTCCTACTGTGAAAAGCATCTTCCGAGTTCAGCTGGGCACGGGGGAAAGATTAGTGATAGACATGTCTCATCGGAACTTCTGAACAAGCTTTTGAGAAATACAAGTTCAGAAAAAGACAGGATCCAATTGTGTCGGGCTACAGATCTATTGCGTGAATTCATGAACGTTTGTCTTTTAGAAGGGACTGCTTATCGATCAAATTCTAAGGCCAGAATCCTGGATTGGATAATTGAAGAGGTATCAAAAGATTTAAAAGCTGCAGAAGCTTTGTTGACTATTGTTTCATGCGAAAAGGAAGAACTTGGCAAACATCTGGGTTTTGAAGAAGGGAAAGACAGTGGCACAGCAATAGTTCCATGGATTCCTGAGATAAAGGTGCAATGTCCAGTTGATACAGCAATGGATGATGGAAGACTGAAAACAATTAGAGAGAATGGGATGCTTGTTGGCAATTGTTTTGCCAATGATGGTCAGATGCTGAAATGTAAACTTTGTGGAGAGGAATTTTCTGATTCCCAGGCTCTTGGACACCATTGGATCGTCAATCATAAAAAGGAAGCCCAGTGTTTTTTCAGAGGATATGTATGTCGTATGTGCAAGAATCCATTTACCAATAAAAGAGATCTTGAGAGGCACGTGAAGCTCCATCATGCTGAAAGTTTGCTTGAATGCTGCATATTACTTTCATGCATACATTGCGGTAGTCATTTCATCAACTATGAGCAACTGTGGGAGCATGTTGTATCTGCTCATTCTGAGGAATTTATTCGATCAGTGGGTATCCTAGAACAAGTTGATGGCTCAAAAGCTTTAGTACCTGTGAAAGCTGAGGATGGCATACAAAATGATACTTATGTTGTTGGGACTTCTAAGCAGGAAGTGACCTCTTCTTCAGGCATTTCAAATCATGTGCTTACCCATAATGGGAGTACAGTCAAGGAAAAAGGTATTGTAAATCGAAACACTGTGCGCAGGTACACCTGTAGGTTCTGTGGGTTGAAGTTTCATCTTCTCCCAGATCTTGGTCGTCATCATCAAGCTGAGCATATGGCTACCAGCTCAAACAAAACCTTGATTTCAAAGAAAGGTAAAGAGATTCTCTCTGTAAAATGGAGGTCTAACAAGGTAAATTCTAAACTAATGCAGAAGGTGGGTTCATCTGTAGGACTTAAACATGCCACTATCATTGCTAGAAAGAAGTGTGTAGAAAAAACTGATTTACATGATTCGAGAAAGATGAATGGGTATTCTGAGATACCCGAACAGAGTGAAAAAAATGGCAGAACTACAGAATTCTATTGTTCAGCTGTGGCAGAGATGTTACTGACTGAGGTTCAGAAAACAAGACCTTGGCCCAGAAATCAGGAACTACTTACCATTGCTCGTTCAGCTTGCTGCAGATTCAATCTGCATGCTGTTTTGGAAGAAAAATATGGTCCTTTGCCGGAACGCCTCTACATAAAGGCTGCCAGACTTTGCAGTGAAGCAAATATTAGAGTAGAATGGCACAGGGAAGGCTTTATTTGCCCTAAACAGTGTAAATATATGGAAGATTGCAAACATGCTACCATGTTAACCCCTCTTCCTGATGTGCACTTCAATTCTCTGCCTGCTCAATTGGAGGATCTGAAAATGGTTGCCAAAGAGATTGGTAATGGGGTTACATGGGAGAAGGATGAAAGTCACTTGGTTCTCACTTCATCTGATTTCGGAAGTTGTCAAGGAAAAGCTTTTGTCATCTGTGAGGATTTGAGCTTTGGGAAAGAAGCAATGCCAGTTCCTTGTGTGATTGATGAAGACTTAATGGATCCATCTATTTCTGCTCTCTATAAAGAGGGTCAAGATCGTAACTTTGATACATACATGCAGAATTTCACCTACATCACTGAGAGGCTGCTGGACCCTTCACTCGGTCTTGACACAAAGAGCTCACAACTGGGATGTACATGCACACAACCACAGTGTTTTCCTGAATCATGTGATCATGTTTACCTCTTTGACAATGACAACGATGATGCAGAAGACATTTATGGACAACCCATGCATGGTAGATTTCCATATGATGAAAAGGGTCGAATAATTTTGGAGGAAGGGTTCTTGGTATATGAATGCAACTCTATGTGCAGCTGTCATAAAGAATGCCCGAACCGGGTGCTGCAGAAGGGAGTGCAAGTCAAAATTGAAGTATATAAAACAAAGCATAAGGGCTGGGCAGTTAGAGCTGCACAAGTAATTTCACGTGGGACATTCATATGTGAATACCTTGGAGAGGTCTTAAATGATCAAGAAGCAAATAAAAGAGGCGAGAGGTATGACAATGAAGGCTGTAGCTATCTATATGATATTGACGCCCATATTGATGCAACTGATCTGATTGATGGGGTACAACCATATGTTATTGATGCTACCAAGTATGGGAATGTTGCACGCTTTATAAACCACAGTTGCTTGCCAAACCTAGTAAATTACCAAGTATTAGTAGAGAGCATGGATTGCCAGCTTGCACATATTGGCCTTTATGCGAGTCGGGATATTGCTGTTGGGGAAGAACTGGCCTATGATTATCGCTACAAGCTACTACCTGGCAAGGGATGCCCCTGCAACTGTGGGGCTAGTAATTGCCGTGGAAGGGGCAAAGCTTGTAATGCTTCAGATGGTCGATCTGCATATTTGAGTCTACAAGATGAAGGTGAGAGCCCTGTTCACAGGATACGATGTCAACGTGGAATAAGGAACACAAGGAATTGA
Protein Sequence:
- >PSME_00002384-RA|Pseudotsuga_menziesii|C2H2|PSME_00002384-RA
ELVNAVLWDDVAKLWDAPVQPNLGSDWKTWKQECMKWFSVSNHHLSKSGLEGENEKAAHFEDMDIAKSKVSRKRPKLEIRRGETRSSEITDVNGSELQAHMEMVDSIISNQQELSTSSQGLSVCSVEGLTNSSIEDVAQVNTRNKVGDDSGYQIVPYSGGNQETPLTEYKSSSKNYLMGSSEHKHQQCSAFIETKGRQCSRWAKDGGMYCCMHLSFDSPDNARRVEQVGSLSQSSICQGMTIYGRRCTHRCKNGSSFCRKHLLQDGQTPDSDRTPSSNTSVNSNKRVRLSVEGQHLVKNQPSDTPLQDLHDVSERSAQRWSNDGGNIRRHQQFESQSQDFVVQDKSSAKGLHQSVNWSRCIGWCRNNSGQCSHRAKPGSSYCEKHLPSSAGHGGKISDRHVSSELLNKLLRNTSSEKDRIQLCRATDLLREFMNVCLLEGTAYRSNSKARILDWIIEEVSKDLKAAEALLTIVSCEKEELGKHLGFEEGKDSGTAIVPWIPEIKVQCPVDTAMDDGRLKTIRENGMLVGNCFANDGQMLKCKLCGEEFSDSQALGHHWIVNHKKEAQCFFRGYVCRMCKNPFTNKRDLERHVKLHHAESLLECCILLSCIHCGSHFINYEQLWEHVVSAHSEEFIRSVGILEQVDGSKALVPVKAEDGIQNDTYVVGTSKQEVTSSSGISNHVLTHNGSTVKEKGIVNRNTVRRYTCRFCGLKFHLLPDLGRHHQAEHMATSSNKTLISKKGKEILSVKWRSNKVNSKLMQKVGSSVGLKHATIIARKKCVEKTDLHDSRKMNGYSEIPEQSEKNGRTTEFYCSAVAEMLLTEVQKTRPWPRNQELLTIARSACCRFNLHAVLEEKYGPLPERLYIKAARLCSEANIRVEWHREGFICPKQCKYMEDCKHATMLTPLPDVHFNSLPAQLEDLKMVAKEIGNGVTWEKDESHLVLTSSDFGSCQGKAFVICEDLSFGKEAMPVPCVIDEDLMDPSISALYKEGQDRNFDTYMQNFTYITERLLDPSLGLDTKSSQLGCTCTQPQCFPESCDHVYLFDNDNDDAEDIYGQPMHGRFPYDEKGRIILEEGFLVYECNSMCSCHKECPNRVLQKGVQVKIEVYKTKHKGWAVRAAQVISRGTFICEYLGEVLNDQEANKRGERYDNEGCSYLYDIDAHIDATDLIDGVQPYVIDATKYGNVARFINHSCLPNLVNYQVLVESMDCQLAHIGLYASRDIAVGEELAYDYRYKLLPGKGCPCNCGASNCRGRGKACNASDGRSAYLSLQDEGESPVHRIRCQRGIRNTRN