Information report for Pp3c2_22070V3.1.p
Gene Details
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Functional Annotation
- Refseq: XP_024362340.1 — protein indeterminate-domain 5, chloroplastic-like
- TrEMBL: A9SVP8 — A9SVP8_PHYPA; Predicted protein
- STRING: PP1S125_69V6.1 — (Physcomitrella patens)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: Achn050501
- Citrus sinensis: orange1.1g007898m
- Manihot esculenta: Manes.13G141500.1.p
- Vitis vinifera: GSVIVT01016867001
- Ziziphus jujuba: XP_015881278.1
Sequences
CDS Sequence:
- >Pp3c2_22070V3.1.p|Physcomitrella_patens|C2H2|Pp3c2_22070V3.1.p
ATGACATTGTCAAATTTAACCAGCGCATCAGCTGGCGAGGTGAGTGTGTCATCAGGCAACCGCATGGATGGCACCAATACTGGGATGCCCCCAACGTCATCCACCCCGCCCACACCTACTACCACCACCGTCACGGTCTCGAGTGGGCAGCCTCTCACTGTTGCGGTTAAACGCAAGCGGAATCTGCCGGGTACCCCAGACCCGGAAGCGGAGGTGATAGCTTTGTCACCAAAGACATTGATGGCCACGAATCGATTCGTGTGCGAAATTTGTAACAAGGGGTTTCAGCGAGATCAAAACTTGCAGTTACACCGACGCGGCCACAACTTGCCGTGGAAGCTGCGGCAACGGACCAGCAAGGAGATTCGCAAGCGCGTCTACATCTGCCCCGAGCCCTCTTGTGTGCATCACGACCCGTCGCGTGCTCTGGGCGACTTGACTGGTATTAAAAAACACTTTTGCCGAAAGCACGGTGAGAAGAAGTGGAAGTGTGACAAGTGCTCTAAGAGATACGCTGTTCAATCCGACTGGAAGGCCCACTCTAAGACTTGTGGTACTCGAGAGTACCGCTGCGATTGTGGTACCTTATTTTCCAGGCGTGACAGTTTTATTACCCACCGAGCGTTCTGTGATGCTCTGGCAGAAGAGAGTGCCCGAGTGTCAGCAGGAAAGCAAGGTGGTGGACAACCTGATGGCCTCATGGGTGCAGGTTCGTCATCCATATCAGTCATGGGTGCTCCTTCCTCTCCTCACGGTAATAACGTGGGTCGTATGAGTGGAGATCCATTGGCCTCTGTGGTTCCATTAGCATCCAGACCTGGTGGTGGTATGCCGCAGTCTATGGTGGGTTTGGGTGGTCTTAGTGAGGGGGGCCATTCCCTCTTGCCTCGTTGGAGTGGAAACCCCGGTTCTAGTCCTGTCTCAAGGACTGGCACTGGATTGTCGCTCTGGTTAGGACCTGGGCCAGGTCCTCCTGGAAATCAGCACCAAATGCATCAACTATTGTCAGGATCGGATGGGAATTCGTCGTTCCTGATGCAGCCTCACAAAGGGATGCAGGGTGGTCCAGGTCTACCTGGAATGATGAACCCACTCGATTACGATGTGCCTCAGGCACCTCGACCTTCAAGTGGTCATCTTCCATTGACACCCCGAGGAAGCCTGTTTGCTCATTTATTTGCATCGGGAAATGGGATGCATGGACTTCAAGGATCAAGTCCATCGCAAAGTGGATCCACTGCTGGCATTGGTATTTCAGGGTTCTCAGACTTAACAGCAGGAGCCAATCGTATGGAGAGAGGGTCTCCAACTTCCTCCGCTGGGTTGACGAGTAACTCATCTTCAGGGAATACCAATGGTGCCGGGAACCTGTCCTCCGTTTCACCACTCTTTAATGCTCATCACCAGCAACAACAACACACTGCCTCTGCGCAGATGTCTGCAACAGCTTTGCTGCAGAAAGCTGCTCAAATGGGCGCAACTGCCAGCAACACCTCCCTATTGCGAGGATTTGGGTTAGGAGGGACAGACTCAAGCTCTATGGGCATCTGGCAGGGCCAACGTCAAGAGCAGCAGTCGCAACAGCAGTCCCAGCAGCAACAACATCAATCCCAGCAACAGCATCAGTCCCAGCAACAGCAGCAATCTCAGTCACAACCTCAATTACAACATCAGCAACAGCAGCAGCAACAATCACAGTCACAACCTCAGTTACAGCAGCAACCACAACAACAGCAGCAGCAGCAGCAATCTCAGACACAACCTCAGTTGCAGCAACAGCAGCAAGGGAGGGCAGGTGATCTTCCACTTAATAGCATGTGTAACATGGTCAACCATCCGTTAATGAGGCGGCCAGGTGACCTGCAGAGTGTTTCACAAGGGCTGGGTGGGACGTCGCCAGGGCAGAGCAACAATTTTGGAGGAGGTCAAGGGAGACTGTCCGACAGTTCCGCCAATGTGCAAGACTTCATGAATTCTCTGTCTGGAGGTGCTGGAATATTCGGAGGACCATTAGGTAACATGCCCTCTATGTTCGGACCTAGTTCGAACAACATGGGAGGAATGCTGCCGCCCAGTACTCATAGGATGTCTCCGAGTGAAGTCCTTGCCAACAGTGCTTTCGCTGGAGGACAAGGAGTGTTGCAAGGCTTGAGCCCTTCCTCTCTGTTGCCAGGTCTTGGAGGTTCCTCCAGAGGGGAGAACGATGGTAGTGACAGATTTACTCGTGACTTCCTGGGGGTAGGAAGAGCTTCAGGAATGACAGCTGCTGGCGGAGGGATGGGTCGCACACTCTCGCAACGAGACTTGGCTAGTATCACATCGCTGGGTCCCGGGGTAGACCTAGGCGCTTTCTTCAACCAAAGAGAGAACCTGCGATCTGTTAATGCAAGCGGCCACTCTCCTGGGAAGTCATGGGACGCCGCTACCTAG
Protein Sequence:
- >Pp3c2_22070V3.1.p|Physcomitrella_patens|C2H2|Pp3c2_22070V3.1.p
MTLSNLTSASAGEVSVSSGNRMDGTNTGMPPTSSTPPTPTTTTVTVSSGQPLTVAVKRKRNLPGTPDPEAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEIRKRVYICPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARVSAGKQGGGQPDGLMGAGSSSISVMGAPSSPHGNNVGRMSGDPLASVVPLASRPGGGMPQSMVGLGGLSEGGHSLLPRWSGNPGSSPVSRTGTGLSLWLGPGPGPPGNQHQMHQLLSGSDGNSSFLMQPHKGMQGGPGLPGMMNPLDYDVPQAPRPSSGHLPLTPRGSLFAHLFASGNGMHGLQGSSPSQSGSTAGIGISGFSDLTAGANRMERGSPTSSAGLTSNSSSGNTNGAGNLSSVSPLFNAHHQQQQHTASAQMSATALLQKAAQMGATASNTSLLRGFGLGGTDSSSMGIWQGQRQEQQSQQQSQQQQHQSQQQHQSQQQQQSQSQPQLQHQQQQQQQSQSQPQLQQQPQQQQQQQQSQTQPQLQQQQQGRAGDLPLNSMCNMVNHPLMRRPGDLQSVSQGLGGTSPGQSNNFGGGQGRLSDSSANVQDFMNSLSGGAGIFGGPLGNMPSMFGPSSNNMGGMLPPSTHRMSPSEVLANSAFAGGQGVLQGLSPSSLLPGLGGSSRGENDGSDRFTRDFLGVGRASGMTAAGGGMGRTLSQRDLASITSLGPGVDLGAFFNQRENLRSVNASGHSPGKSWDAAT*