Information report for Pp3c1_16920V3.5.p
Gene Details
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Functional Annotation
- Refseq: XP_024390101.1 — zinc finger protein MAGPIE-like isoform X1
- TrEMBL: A0A2K1L8H7 — A0A2K1L8H7_PHYPA; Uncharacterized protein
- STRING: PP1S63_51V6.1 — (Physcomitrella patens)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: Achn050501
- Citrus sinensis: orange1.1g007898m
- Vitis vinifera: GSVIVT01016867001
Sequences
CDS Sequence:
- >Pp3c1_16920V3.5.p|Physcomitrella_patens|C2H2|Pp3c1_16920V3.5.p
ATGACATTGTCCAACTTAACCAGCGCATCAGCTGGCGAAGCAAGTGTGTCGTCAGGTAACCGTACAGATGGCACCAATACTGGGATGCTACCGACATCATCCACCCCAGCCACCCCCACTGTCACCACCGTTACGGTCTCGAGTGGTCAGCCTCTTGCTGTTGCTGTCAAACGCAAGCGGAATCTGCCAGGTACTCCAGACCCGGAAGCCGAGGTGATAGCTTTATCACCAAAGACATTGATGGCCACGAATCGATTCGTGTGCGAAATTTGTAACAAGGGGTTTCAGCGAGATCAAAATCTGCAGTTACATCGGCGCGGTCACAACTTGCCGTGGAAGCTGCGGCAACGGACCAGCAAGGAGGTTCGCAAGCGCGTCTACATCTGCCCTGAGCCCTCTTGTGTGCATCACGACCCGTCGCGTGCTCTGGGCGACTTGACTGGAATCAAAAAACACTTTTGCCGAAAGCACGGTGAGAAGAAGTGGAAGTGTGACAAGTGCTCTAAGAGATACGCTGTTCAATCCGACTGGAAGGCCCACTCTAAGACTTGTGGTACTCGAGAGTACCGCTGCGATTGTGGGACCTTATTTTCCAGGCGTGACAGTTTTATTACCCACCGAGCGTTCTGTGATGCTCTGGCAGAAGACAGTGCTCGAGTATCTGCAGGAAAGCAAGGTGGTGGACAACCTGATAGCCTCCTAGGTTCAGGTTCGTCATCCATGTCAGTCATAGGTGCTCCTTCCTCTCCTCACGTGAATAATGTGGGTCGTATGAATGGGGAACCTTTGGCTTCCATGGTTCCGTTAGCAAGTAGACCTGGTGGTATGCCACAGTCTATGGTGGGTTTGAGTGATCTTGGTGAGAGTTGCCACCCTCTGTTGCCTCGTTGGGGTGCAACCTCTGGTTCTGGTCCTGCCTCAAAGACTGGCACTGGATTGTCGCTCTGGTTAGGACCTGGCCCTGGTCCTGGTAATCAGCAGCAGATGCATCAGCTGCTACCAGGATCGGATGGAAATTCTTCGTTTTTAATGCAGGCTCACAAAGGCATGCAGGGTGGTGCAGGTCTGCCTGGAATGATGAACACACTCGACTACGAGATGCCACAGGCACCTCGACATTCAAGTGGTCACCTTCCGTTGACACCCTCTGGAAGCCTGTTCGCCCACTTGCTTGCATCTGGAAATGGACAAGGACTTCAAGCATCAAGTTCATCTCAAAGTGGAGCTACTACTGGGATGGATATATCAGGATTCTCAGATTTTTCAGCAGCGGGAGCTAACCGTATAGATAGTGGATCAGCCACCGCAGGGTTGTCCTCGACTTCCTCAGCTGGAATGGCAAGCAACGCTTCTTCAAGGAGCACCAATGGAGGTGGAAACCTTTCCTCAGTGTCACCACTTTTTAATCCTCAACATCAGCAACAGCAGCACACTGCTTCTGCTCAGATGTCTGCAACAGCTCTACTGCAGAAAGCTGCTCAAATGGGTGCAACTGCCAGCAACACCTCTCTATTCCGAGGATTTGGGCAAGGTGGCACAGATTCAGACTCCATGGGCATCTGGCAGGGACAACGCCAAGAGCAGCAACCGCAGCAGCAACACCTGGCGCAGCAGCAGTCTCAATCACAATCCCAGCCACAACAACATCAGCATCAGCAGCAGGGAAGGACAGGTGATCTTCCACTTAACAACATGTCCAACATGGGAAACCAACCATTAATGAGGCGGCCAGGTGATTTGCAGAGTGTTTCACAAGGGCTGGGCGGCTCGTCGTTAGGGCAGACCAACAACTTTGGGGGAGTTCAAGGGAGACTGTCAGAGAGTTCCACTAACGTGCAAGACTTCATGAACTCTTTATCTGGAGGGGCTGGAATGTTCGGAGGACCGTTTGGTAGTATGCCCTCCATGTTTGGACCTAGTTCTACAAACATGGGAGGAATGCTGCCACCCAGTACTCATCGGATGTCTCCGAGTGACGTTCTCGCTGGTAGTACGTTCCCTGGAGGAGGGCAAGGTGTGTTTCAAGGCATGAGTTCTTCTTCATCCTTGTTGCCAGGTCTTGGTGGTTCTTCTAGAGTGGAGAACGATAGCAGCGACAGGTTCACGCGTGATTTTCTGGGGGTGGGAGGAGCTTCGGGGATTACAGCTGCTGGTGGAGGGATGGGGCGTACTCTGTCACCGCGAGATTTGGCTAGGATCACATCGCTAGGTCCAGGGGTAGACCTCGGCGTCTTCTTTAACCAACGAGAGAATTTGCGATCCGTGAATGCTAGCGGTCATTCTCCTGGGAAGTCATGGGACCCCTCCACCTAG
Protein Sequence:
- >Pp3c1_16920V3.5.p|Physcomitrella_patens|C2H2|Pp3c1_16920V3.5.p
MTLSNLTSASAGEASVSSGNRTDGTNTGMLPTSSTPATPTVTTVTVSSGQPLAVAVKRKRNLPGTPDPEAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKRVYICPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEDSARVSAGKQGGGQPDSLLGSGSSSMSVIGAPSSPHVNNVGRMNGEPLASMVPLASRPGGMPQSMVGLSDLGESCHPLLPRWGATSGSGPASKTGTGLSLWLGPGPGPGNQQQMHQLLPGSDGNSSFLMQAHKGMQGGAGLPGMMNTLDYEMPQAPRHSSGHLPLTPSGSLFAHLLASGNGQGLQASSSSQSGATTGMDISGFSDFSAAGANRIDSGSATAGLSSTSSAGMASNASSRSTNGGGNLSSVSPLFNPQHQQQQHTASAQMSATALLQKAAQMGATASNTSLFRGFGQGGTDSDSMGIWQGQRQEQQPQQQHLAQQQSQSQSQPQQHQHQQQGRTGDLPLNNMSNMGNQPLMRRPGDLQSVSQGLGGSSLGQTNNFGGVQGRLSESSTNVQDFMNSLSGGAGMFGGPFGSMPSMFGPSSTNMGGMLPPSTHRMSPSDVLAGSTFPGGGQGVFQGMSSSSSLLPGLGGSSRVENDSSDRFTRDFLGVGGASGITAAGGGMGRTLSPRDLARITSLGPGVDLGVFFNQRENLRSVNASGHSPGKSWDPST*