Information report for Potri.012G092400.1
Gene Details
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Functional Annotation
- Refseq: XP_024438277.1 — lysine-specific demethylase REF6
- Swissprot: Q9STM3 — REF6_ARATH; Lysine-specific demethylase REF6
- TrEMBL: A0A2K1YB81 — A0A2K1YB81_POPTR; Uncharacterized protein
- STRING: POPTR_0012s09390.1 — (Populus trichocarpa)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Sequences
CDS Sequence:
- >Potri.012G092400.1|Populus_trichocarpa|C2H2|Potri.012G092400.1
ATGGCGGCTCCAAGTGGGTTAAGTCCAGAACCACCACAACCACCAACAAGTACAGAAGTATGTCAATGGCTAAAGAACTTACCTTTAGCACCTGAATACCGTCCAACACAAGCTGAATTCCAAGATCCAATTGCTTACATTTTCAAAATTGAAAAAGAAGCTTCTCAATATGGAATCTGCAAAATTATCCCTCCTGTCTTACCCTCTGCTAAAAAAACCACTCTTTCCAACCTCAACCGCTCTCTCTCCGCCCGTAACGGTGACTCTTCTGCCCCCACATTCACCACACGGCAGCAGCAGATCGGATTCTGCCCCAGGAAACCTCGCCCTGTTCAAAAACCAGTGTGGCAGAGCGGTGAGACCTACACATTTCAAGAATTTGAAACCAAGGCTAAAAGCTTTGAGAAGAATTATTTGAAGAAGTTCTCTAAGAAGGGAGGTCTTTCTCCATTAGAAATTGAAAACCTTTATTGGAAAGCTACTTTAGATAAGCCTTTTGCTGTAGAATATGCTAATGATATGCCTGGTTCTGCGTTTTCGCCGAGGAAAAAGGAGGGACAAGGAGGGGTTGTTGGGGAGGGAATGTATGTGGGGGAAACTGAGTGGAATATGAGGAGTGTTTCAAGGGCTAAAGGGTCCCTGTTGAGGTTTATGAAGGAGGAAATACCAGGGGTTACTTCGCCTATGGTTTATATTGGGATGATATTTAGTTGGTTTGCTTGGCATGTTGAGGATCATGATTTGCATAGCTTGAATTATATGCATATGGGTGCTGGGAAGACTTGGTATGGTGTGCCTAGAGAGGCTGCTGTCGCATTTGAGGAAGTTGTTAGGGTTCATGGGTATGGTGGAGAGAATAATCCTCTTGTTACATTTGCTGTTCTCGGTGAGAAGACGACAGTAATGTCACCTGAAGTATTTATCAGTGCAGGTGTACCATGCTGCAGGTTAGTTCAAAATGCCGGGGAGTTTGTGGTCACTTTCCCAAGAGCCTATCATTCAGGGTTCAGTCATGGATTCAACTGTGGGGAGGCAGCCAATATTGCTACACCTGAATGGTTGACAGTTGCTAAAGATGCTGCTATTCGAAGAGCTTCAATCAATTACCCTCCTATGGTGTCTCATTTCCAGTTACTTTATGATCTTGCTCTTGAATTTTGTACAAGAATACCTGTGAACATCAGTGCTAAACCACGGAGTTCAAGACTGAAAGATAAGCAAAAGGGTGAAGGAGAAACACTGGTTAAAGAGCAATTTGTGAAGAATATGATGCAGAATAATGACCTGCTTCATATTCTTGGAAAAGGATCTTCAGTGGTGCTTCTTCCACGAAGTTCTTCAGACATTTCTGTTTGTTCAAACTTACGAGTTGGATCCCAGCTAAGAGATAACCCCACCCTTGGATTAAGCAGCCAGAAGGATTTTATGAAATCCTCAAAAAGCTCAGGTTCTGATGACATCTTGATGGACGAGAACCAGGAAATTAATCAAGTGAAAGGCTTCTTTTCAGTGAAAGCGAAGTTTGCTTCTTTGTGTGAAAGGAATAGGTTCTCCACAATAAACGGAAATGAATGCACACAGAGTATGAACATGAGTACTGAAAGAGGTAGCCCCATTCATGGTGATAAGCTGTCAGATCAGAGACTGTTTTCATGCGTCACATGTGGAATTTTGAGCTTTGATTGTCTTGCCATCATTCAACCGAAAGAGGCAGCTTCTAGATACCTCATGTCAGCTGATTGTAGTTTCTTTAATGATTGGGTCGTTGGTTCTGGAGTAACTAGGGATGTTTTTACTGTTGCTGGTGGGATTGCAAATATTCCTGAGCAGAATTCCTCAATGAGATGGGTGAGAAAGAATACCGTGGCTGGTTTATATGATGTCCCTGTTCAATCTCTTAATTACCAAATTCAGATGGCAGATCAAAGTGTTGAAGTGGCTTCCAGTTCTGCAAAACAGATGGAGTCTTCTGCTCTTGGCCTATTAGCTTTGAATTATGGAAATTCGTCTGATTCTGAGGATGATCAGGTTGAAGCAGGTCTATCTTGCCATGATGAAACTAACTTCACAAACTGTTCATTAGAAAGCAAATATCAGGGTCAGAGTTCTGCTTGCCCTTCTTACAAGCAGAAGTACTATGATGCTGAAACTGGTGGTCACCCTCTATCTCCATCAAAACATGATCAGCGGGGTGATGTTCCTTTCAAAGCTATTGATATGTATCCAGAACATGGAGATAGGCCAGATAATTTCAAGGATAGAAGTGATGATACTCTTGGATGTTCTTTTGGATTCCCAGCCAATAACCCTGCTTGCATTGAATCAAATGGTTTGGATGGTAGATACAGAGATCCGGTTTCAATACCACACATGTCTTTAAATTGTTCCCCAATTGTCCATGATACTGAAAAAACAAAGTTTAACAGGCCTACTGTACCAATAGAGAATCCAGATATGCCATTTACCCAAAGATCTGATAGAGACTCTTCGTGCTTGCACGTGTTCTGTCTTGAGCATGCTGTAGAAATAGAACAACAACTTCGTCAAATCGGTGGAGTACATATATTCCTTCTTTGCCATCCAGAGTATCCCAGGATTGAAGCAGAAGCAAAGTCAGTGTCAGAAGAATTGGGAATTGATCATCTATGGAATGACATTACTTTCAGAGATGCTGCCAAAGAGGATGAGGAGAGGATCCAGTCAGCTTTGGATACTGAGGAAGCCATACCAGGGAATGGGGACTGGGCTGTAAAGTTGGGGATCAATCTTTTTTACAGTGCCAACCTCAGCCGATCTCCTCTTTATAGTAAGCAGATGCCATACAATTCAGTTATATACAATGCCTTTGGTCGTGCTTCTCCAGTTAGTTCACCCCCAAAATTTAAGGTTTATGGAAGGAGATCTGGGAAGCCAAAAAAAGTTGTGGCAGGGAAATGGTGTGGAAAAGTTTGGATGTCAAATCAAGTTCATCCCTTTCTAGTGAAAAGGGATTTTGTATATCAAAATCAAGAACAAGAACAAGAAAGAAGCTTCCATGCTTTGGCCACTCCTGATGAAAAGCTTGAGAAAAAACCACAAACCATCCACAGAAATGAAACCAGTAGAAAATCTGGGAGGAAGAGGAAAATAATAGCAGGGAGCAGGACTGTTAAGAAAGTTAAGTGTCTGGAAGCAGAAGAAGCAGATTCAGAAGACTCGGTGGGGGATAATTCTCATAGGCAGCATATGAGAATTCACAATAGGAAAAACACTGAAGACATTGAGAGAGAGATTTCATATGATCTAGTAGAGGATAGCAATCAGCAGCATGGGAGCTACAGACGCAAATGGGCCAAATCTGTTGAGAGTGATGATGCAGTTTCAGATGATCCATTAGCTGAACATGTTCGTCAGCAGTATAGGAGAATGCGTAGAAGCAAGCAAGCCAAATCTATCAAGAGGGAAAATACAGTTTCTTATGCTTCAGTGGAGAACAAGTTTCGAAAGCAGCTTAGGAGAGTTCATAGAAGCGACCAAGCCAAATGTTCTGAGAGACGATGTGTAGCTTCTGATGACTCACTGGACGATAACAGTGATCAGTGGCATGGGAGAGCTCCAAGAAGCACACTAGCAAAATATACTGAGAGGGAAGATGCAAATTCAGATGATTCACCAGAGGAGAGTTCTCGTTGGCAACATGGGAGAGTTTCTAGGAGCAAACTTTTGAGATATGTCAAAAAGGAAAGTGCAATTTCAGATGATTCATTGGAGAATGGCTTTAAACAGCACAACAAGAGGATATCAAGAGGCAAGCGAGCCCAGGTCATTAAAAGGGATGATGTGGTTTCCGATGATTCATTGGATGAAAGTGCATTTCAGCAGCTCCCGAGATTTTCTAGGATCAAGCTAGCCAAATTAATTGAGAGGGAAGATGCATTTTCAGATGGTTCGTTGGAGGAAAATATCCATCAGCAGCATGGAAGGATTCTTAGAAGCAAGCAATCCAAATTTGTTGAAAGGGAAGATGCAATTTCAGATGATTCTCTTGAGGACAGTACTCACTGGCAGCACAGAAGAATTCCTAGAAGCAAAATGGCCAAATTTGTCGAGAGTGAAGATGCAGCTTCAGATGATTTGCAGGAGGATGATGGTCATCAGCATCACAGAAGAATTCCAAAACGCAAAAAGGCCAACTCTATTGAGAGTGAAGATGTAGTTTCTGATGATCTGTGGCAGAATAATATTCATCGGCACCTTAGGAAGACTCCTAGAGGCAAGCAACCCAATATAGTGGAGAGGGAAGAAGCTGTTTCAGATGACTTACTGGAGAATAGTTCTGATCAGCAGGACAGGATTATTCTTCGAAGCAAGCAGAAGAAATCTTCAATGAAACAAGGGATTCCTCGGCAACTGAAACAGAGTGCCCCTAAGATGATAAAAAAAGAGACCCCACAATTAATGAAACAAGAGAGACAAATAAAGCCAGAAACTCCTCAGCTTCGGTTTGGTAAAAGTGATATGAATGCTAGACAGTTTGATTCACATGCTGAAGAGGAGCGAGGTGGACCTCGCATGCGCCTCAGGAAAAGACTCTCAAAGGCTCCAAAACAGTCGTTAACAAGGCTGAAAGAGAAGCAGAACATCAAGAAAAAAGTGAAGGATGCTACAGCAGTGAAGGCTCCAGCTGGGCGAAAGAATGTTAAAATGAAAGACGAGGAGGCAGAATATCAGTGTGACATTGACGGGTGCAGAATGAGTTTTGTATCGAAACAGGAGCTTGCACTGCACAAAAGAAACATTTGTCCAGTCAAGGGGTGTGGAAAGAAGTTTTTCTCGCACAAATATCTGGTGCAGCATCGCCGAGTCCATATAGATGACCGCCCTCTCAAGTGCCCTTGGAAGGGATGCAAGATGACATTCAAGTGGGCATGGGCCCGGACCGAACATATCAGGGTTCACACAGGTGCTCGTCCTTATGTATGTGCTGAGGAAGGCTGTGGCCAGACATTCAGATTTGTGTCAGATTTCAGTCGTCACAAGCGGAAGACTGGTCATTTGGCAAAGAAAGGCCGGGGGTAA
Protein Sequence:
- >Potri.012G092400.1|Populus_trichocarpa|C2H2|Potri.012G092400.1
MAAPSGLSPEPPQPPTSTEVCQWLKNLPLAPEYRPTQAEFQDPIAYIFKIEKEASQYGICKIIPPVLPSAKKTTLSNLNRSLSARNGDSSAPTFTTRQQQIGFCPRKPRPVQKPVWQSGETYTFQEFETKAKSFEKNYLKKFSKKGGLSPLEIENLYWKATLDKPFAVEYANDMPGSAFSPRKKEGQGGVVGEGMYVGETEWNMRSVSRAKGSLLRFMKEEIPGVTSPMVYIGMIFSWFAWHVEDHDLHSLNYMHMGAGKTWYGVPREAAVAFEEVVRVHGYGGENNPLVTFAVLGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHSGFSHGFNCGEAANIATPEWLTVAKDAAIRRASINYPPMVSHFQLLYDLALEFCTRIPVNISAKPRSSRLKDKQKGEGETLVKEQFVKNMMQNNDLLHILGKGSSVVLLPRSSSDISVCSNLRVGSQLRDNPTLGLSSQKDFMKSSKSSGSDDILMDENQEINQVKGFFSVKAKFASLCERNRFSTINGNECTQSMNMSTERGSPIHGDKLSDQRLFSCVTCGILSFDCLAIIQPKEAASRYLMSADCSFFNDWVVGSGVTRDVFTVAGGIANIPEQNSSMRWVRKNTVAGLYDVPVQSLNYQIQMADQSVEVASSSAKQMESSALGLLALNYGNSSDSEDDQVEAGLSCHDETNFTNCSLESKYQGQSSACPSYKQKYYDAETGGHPLSPSKHDQRGDVPFKAIDMYPEHGDRPDNFKDRSDDTLGCSFGFPANNPACIESNGLDGRYRDPVSIPHMSLNCSPIVHDTEKTKFNRPTVPIENPDMPFTQRSDRDSSCLHVFCLEHAVEIEQQLRQIGGVHIFLLCHPEYPRIEAEAKSVSEELGIDHLWNDITFRDAAKEDEERIQSALDTEEAIPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYNAFGRASPVSSPPKFKVYGRRSGKPKKVVAGKWCGKVWMSNQVHPFLVKRDFVYQNQEQEQERSFHALATPDEKLEKKPQTIHRNETSRKSGRKRKIIAGSRTVKKVKCLEAEEADSEDSVGDNSHRQHMRIHNRKNTEDIEREISYDLVEDSNQQHGSYRRKWAKSVESDDAVSDDPLAEHVRQQYRRMRRSKQAKSIKRENTVSYASVENKFRKQLRRVHRSDQAKCSERRCVASDDSLDDNSDQWHGRAPRSTLAKYTEREDANSDDSPEESSRWQHGRVSRSKLLRYVKKESAISDDSLENGFKQHNKRISRGKRAQVIKRDDVVSDDSLDESAFQQLPRFSRIKLAKLIEREDAFSDGSLEENIHQQHGRILRSKQSKFVEREDAISDDSLEDSTHWQHRRIPRSKMAKFVESEDAASDDLQEDDGHQHHRRIPKRKKANSIESEDVVSDDLWQNNIHRHLRKTPRGKQPNIVEREEAVSDDLLENSSDQQDRIILRSKQKKSSMKQGIPRQLKQSAPKMIKKETPQLMKQERQIKPETPQLRFGKSDMNARQFDSHAEEERGGPRMRLRKRLSKAPKQSLTRLKEKQNIKKKVKDATAVKAPAGRKNVKMKDEEAEYQCDIDGCRMSFVSKQELALHKRNICPVKGCGKKFFSHKYLVQHRRVHIDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEEGCGQTFRFVSDFSRHKRKTGHLAKKGRG*