Information report for Phvul.003G207700.1
Gene Details
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Functional Annotation
- Refseq: XP_007155510.1 — hypothetical protein PHAVU_003G207700g
- Swissprot: Q9STM3 — REF6_ARATH; Lysine-specific demethylase REF6
- TrEMBL: V7CBG9 — V7CBG9_PHAVU; Uncharacterized protein
- STRING: XP_007155510.1 — (Phaseolus vulgaris)
- GO:0009741 — Biological Process — response to brassinosteroid
- GO:0009826 — Biological Process — unidimensional cell growth
- GO:0010228 — Biological Process — vegetative to reproductive phase transition of meristem
- GO:0033169 — Biological Process — histone H3-K9 demethylation
- GO:0035067 — Biological Process — negative regulation of histone acetylation
- GO:0048366 — Biological Process — leaf development
- GO:0005634 — Cellular Component — nucleus
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Cicer arietinum: XP_004515844.1, XP_004501832.1
- Glycine max: Glyma.04G192000.3.p, Glyma.04G192000.1.p, Glyma.04G192000, Glyma.04G191900.1.p, Glyma.04G191900, Glyma.06G174000.2.p, Glyma.06G174000.1.p, Glyma.06G174000, Glyma.06G173800.1.p, Glyma.06G173800, Glyma.04G192000.2.p
- Lotus japonicus: Lj4g3v1389260.1, Lj0g3v0351959.1
- Medicago truncatula: Medtr3g075210.1, Medtr3g075210
Sequences
CDS Sequence:
- >Phvul.003G207700.1|Phaseolus_vulgaris|C2H2|Phvul.003G207700.1
ATGGCGGGTTCGGAGGAAGTATTGCCGTGGCTGAAATCGCTGCCGGTGGCGCCTGAGTACCGCCCAACCACGGCGGAGTTCCAAAACCCGATCGCCTACATCTCCAAAATCGAGAAAGAAGCCTCTCAATACGGAATCTGTAAGATCATTCCACCGCTTCCCCCTTCTCCCAAGAAAACCGCAACTGCCAACCTCACGCGCTCCCGGCCTACCTTTACCACGCGCCAACAGCAGATCGGCTTCTGCCCCCGCCGCGCGCAGCCGGTGCGCCGCCGCGTATGGCGCAGCGGCCATCACTACTCCCTTCGGGAATTCGAAGCCAAGGCTAAGGCCTTCCACAAAACCTACTTAAACAAAAACAAACCCAAACCTCTCGAACTCGAAACGCTCTATTGGAAAGCCACCTTAGACAAACCCTTCTCCGTCGAATATGCGAACGACATACCTGGCTCCGCGTTTAGCCCCCTCCGTGCTTCGCGCGATGCCGATTACGTTGGCGACACCGCGTGGAACATGAGGGCGGTTTCGCGGGGGAGCGACTCGCTTCTTAGGTTCATGAAAGAGGAAATTCCAGGCGTGACGTCACCCATGGTCTATGTGGCAATGTTGTTCAGCTGGTTCGCGTGGCACGTGGAGGATCACGACTTGCATAGCTTGAACTACCTCCATTTCGGCGCTCCCAAGACTTGGTACGGCGTGCCTAGGGACGCTGCGGTCGCGTTCGAGGACGTTGTCAGAATTCATGGCTACGGCGGAGAGATTAATCCTCTCGTTACTTTTGCTATTCTTGGCGAGAAAACCACGGTGATGTCTCCGGAGGTTTTTGTTGGCGCCGGTATTCCCTGCTGCAGGCTAGTTCAAAATGCTGGGGAATTTGTTGTGACGTTTCCAAGAGCGTATCACACAGGATTTAGTCATGGGTTTAACTGTGGAGAGGCAGCTAACATTGCGACGCCTGAATGGTTAAGGTTTGCTAAGGATGCTGCTATTCGCAGGGCTTCCATTAACTATCCTCCCATGGTGTCACATTTCCAGTTGCTTTATGACCTTGGCCTTGCCTTTTGTTCTAGAATCCCTGGAGGCATTAGAGCTGAACCACGAAGTTCTCGGCTTAAATATAAGAGAAACGGTGAAGGAGAAACTGTAATTAAAGAACTATTTGTACAGGACGTGGTAGAGAACAATGATCTGCTTCACACACTCAGCAAAGGGTCTGCTATAGTACTTCTTCCTCGTAGCTCTTCTGACTTTTCTGTTTGCTCAAAGTTACGCGTTGGATCACAACAACTAAAAGTGAACCCTGACTTTTCTCTCAATGTATACGATTATGAGAGAATGGATTCCCCAGATTTTATTTCTGATGACCTTATGTTCAACAGGAATCATGGAATCAAACAAGTAAAGAGTTTTTATTCCGTAAAAGAGAAGTTTGTTACGTTGTGTGAAAAGAACAGGATTTTGCCATTCAGTTCGGATGGGAACATATACCCTTCAAGTTCAAAAACACTGCAAGGAGACAGTGAAAAGGAAACAGATCAAGGAGATGGGTTGTCAGATCAGAGACTATTTTCTTGTGTCACATGTGGAATATTAAGCTTTTCCTGTGTTGCCATTGTACAACCTAGAGAACCAGCAGCTACGTACCTTATGTCAGCTGATTGTAGTTTCTTTAATGATTGGATTGTTGGTTCTGGAGTAACTAGCAATAAATTTGCAAATGCCCATGAAGATGCAAGTATTCCCAAGCCAAGAACATATACAGTGACACATCTTGTTGACAATGCAGGATGGACTAAGCAATATGCCCAACATGATTCAAATGGTGTTCCCGTTCAATCTGAGGCTTTAAATTCTGGAAGAGATAAAGGAAATACAGCTCTTGCCTTATTGGCATCAGCGTATGGGAATTCTTCTGACTCTGAGGAAGACCAGGGGCGATTAGATATTGCACTTGATGGTGATGAATTAAATGTAATAAACCATCCATCCACTAATGGATCTCAGGAGATGTCAAGTATGCCTTCTCATTTCAAAGATCCCCATGCTAGTCCCATGGTTAGAGTCATTGGACTTGATAAAGAAGATGATATTCATTCAAGACGAATGGACAATTATGAGTATTATATGCATAAAAGAGTTGAGCACATTATGACTCCTTTTGACTACTCTGTTAAGTCAGAAGATCTTGACAACACTTCAGGGGTGGCATTTAGAAATACTAGGGCTGTGCCCCATCTCTCCTTGAATCGCTCCCAAGATACTCACACTGATGAAGACTCGTCTAGAATGCATATCTTCTGTTTAGAGCATGCTGTAGAAGCAGAGCAGCAACTTCGCCCAATAGGAGGAGCACACATATTGCTCCTATGTCATCCAGATTATCCAAAGATAGAGGCTGAAGCAAAGATTGTTGCAGAGGAACTGAGGATTGGTTATACATGGAAGAATACTATATACAGGCAAGCCAACAGGGAAGATGAGGTGAGGATCCAATCAGCTCTGGATAGTGAGGAAGCTATTCCTGGAAACGGGGACTGGGCTGTAAAGCTGGGAATCAATCTCTTTTACAGTGCCAATCTTAGCCGTTCAGCACTTTACGTTAAGCAGATTCCTTACAATTCTGTTATATACAAAGCATTTGGTCAAAGCTCTCCAGCAAGCTCACCTACAGAGCCCAAGGTCTATCAGAGAAGGACCAACAAGCAGAAAAAGGTAGTTGCTGGGAAATGGTGTGGCAAAGTTTGGATGTCCAATCAAGTCCATCCCCTTTTAGCAAAAAGAGATTTCGAAGATGTTGAGAATGAAACAAGCTTACATGGGTGGCCATTGCCTGATGATGAGAAAATTGAGAGATCAGTAAGTAACCACAAAAGCAATACTTCAACTCGAAAATCTGGTAAGAAATGGAAAAAATCTGTTCAGAAAGGAGGAACCTGGGAAGAAAGTTTTTCTGAGAGAGATTGGCTTTCAGATAATTCCATTGAAGAAAAATCCAATAAATATCGAAGGAGGATTCTTGGGAGTAAGCAAACCAGGCATATTGAGAGAGATGATACTACTTCACAAGGGGATTATTCTCCTCTGCCACATCATAAAAAGCCTATAAGCAAACATTCAGAATCTAGTGGAAATGATGCAGTTTCTGATGATTCTTGTATACAGCATCGAAGGAAGGCTAACACCAATGAAGCTAAATTTGTTGGCGGTGATGTGTTTTCAGATGATACAATGGACTACGGGTCTGATCGGTTGCATAGGGGGGAGCTTAGCAATGGGCAGGATGCTATTTCAGACAATTCATTGGGTACCTGTTCTCTTCAGCTGCGCAGAAAGACTCCTAAAGGCAAGTATGATAAATACATTATAGAAGAAGACATGATTTCTGATGACCAAAGCGAGGTTTGTTTTTGGAAGCAGAGAGGGAATATATCTAAAGGCAGACAAAGATCCCTTTCTGCTAAAAATAAAGATAATCGGGAGCACCATAGGCAGAAACAGCAACAAAGGAATCTGAGAAGCAGGCAAGACAAGCACCTTGCATTCATCGGTGAGGAAGATGTAATGTCTGATGACCAGTTGAAGGATCACTTTCAGAAGCCCCAAAGAAGTACTCGAAGGAGCAGGCAAAATAAATACAATGATAAAGATCTTATGGATGACTTGGCAAAAAATAATTTTTATATGCTATATAGAACTCGTAAAAGGAAGCAAGCTAAAGATATGGATGAGGACAGTATAGATTCAGATGATCTAATAGAGGATATTTTTCATCTGCAGCACAAAAGAACTCTTCAAAGTAAGCAATCTAAATCTCAGATTCTTCAACCAAAGAAACAAACTAATCCACTCCATTTGAGAAACAAGACATCCCGTCCTGTGAAACAAGGTGCTCCTACGCTAATGAAATCAAAGGCTGCTCGGCAGGCAAAGAATCAATCTGGAAACTCAAAAGACTTAACATTACATGTGGAAGAGGAGGAAGATGGTGGCCCTCGCACACGACTTAGGAAGAGAGTCCTAGAAAAAGAGTCTGAAGGAAACTTGAAAGAAAAGAGAATCAAAAGGGAAAAGGCGAAGAATACAACAGCTGCGAAGGTTTCAGTTGGCCATGCCAAAACAAAGGATGAGGAATCAGAATATCAGTGTGACATTGAGGGTTGTACCATGAGTTTTGGGTCTAAACAGGAGCTGTTGCAACATAAGAGAAACATTTGTCCTGTGAAAGGATGCGGAAAGAATTTTTTTTCGCACAAATATCTAGTGCAGCATCGTCGAGTTCATGAGGATGACCGCCCATTGAAGTGCCCTTGGAAAGGGTGTAAGATGAGTTTCAAGTGGGCATGGGCACGCACTGAGCACATTCGAGTCCACACTGGTGCTCGTCCTTATGTGTGCGCTGAGCCAGGGTGTGGGCAAACATTTAGATTTGTTTCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATGCAACCAAGAAGAATTGTTGA
Protein Sequence:
- >Phvul.003G207700.1|Phaseolus_vulgaris|C2H2|Phvul.003G207700.1
MAGSEEVLPWLKSLPVAPEYRPTTAEFQNPIAYISKIEKEASQYGICKIIPPLPPSPKKTATANLTRSRPTFTTRQQQIGFCPRRAQPVRRRVWRSGHHYSLREFEAKAKAFHKTYLNKNKPKPLELETLYWKATLDKPFSVEYANDIPGSAFSPLRASRDADYVGDTAWNMRAVSRGSDSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHFGAPKTWYGVPRDAAVAFEDVVRIHGYGGEINPLVTFAILGEKTTVMSPEVFVGAGIPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRFAKDAAIRRASINYPPMVSHFQLLYDLGLAFCSRIPGGIRAEPRSSRLKYKRNGEGETVIKELFVQDVVENNDLLHTLSKGSAIVLLPRSSSDFSVCSKLRVGSQQLKVNPDFSLNVYDYERMDSPDFISDDLMFNRNHGIKQVKSFYSVKEKFVTLCEKNRILPFSSDGNIYPSSSKTLQGDSEKETDQGDGLSDQRLFSCVTCGILSFSCVAIVQPREPAATYLMSADCSFFNDWIVGSGVTSNKFANAHEDASIPKPRTYTVTHLVDNAGWTKQYAQHDSNGVPVQSEALNSGRDKGNTALALLASAYGNSSDSEEDQGRLDIALDGDELNVINHPSTNGSQEMSSMPSHFKDPHASPMVRVIGLDKEDDIHSRRMDNYEYYMHKRVEHIMTPFDYSVKSEDLDNTSGVAFRNTRAVPHLSLNRSQDTHTDEDSSRMHIFCLEHAVEAEQQLRPIGGAHILLLCHPDYPKIEAEAKIVAEELRIGYTWKNTIYRQANREDEVRIQSALDSEEAIPGNGDWAVKLGINLFYSANLSRSALYVKQIPYNSVIYKAFGQSSPASSPTEPKVYQRRTNKQKKVVAGKWCGKVWMSNQVHPLLAKRDFEDVENETSLHGWPLPDDEKIERSVSNHKSNTSTRKSGKKWKKSVQKGGTWEESFSERDWLSDNSIEEKSNKYRRRILGSKQTRHIERDDTTSQGDYSPLPHHKKPISKHSESSGNDAVSDDSCIQHRRKANTNEAKFVGGDVFSDDTMDYGSDRLHRGELSNGQDAISDNSLGTCSLQLRRKTPKGKYDKYIIEEDMISDDQSEVCFWKQRGNISKGRQRSLSAKNKDNREHHRQKQQQRNLRSRQDKHLAFIGEEDVMSDDQLKDHFQKPQRSTRRSRQNKYNDKDLMDDLAKNNFYMLYRTRKRKQAKDMDEDSIDSDDLIEDIFHLQHKRTLQSKQSKSQILQPKKQTNPLHLRNKTSRPVKQGAPTLMKSKAARQAKNQSGNSKDLTLHVEEEEDGGPRTRLRKRVLEKESEGNLKEKRIKREKAKNTTAAKVSVGHAKTKDEESEYQCDIEGCTMSFGSKQELLQHKRNICPVKGCGKNFFSHKYLVQHRRVHEDDRPLKCPWKGCKMSFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHATKKNC*