Gene Details:

  • Gene ID: PGSC0003DMP400026611
  • Gene Family: C2H2 family
  • Description: C2H2 family protein
  • Species: Solanum tuberosum
  • Source: C2H2 family gene from PlantTFDB

Protein Features:

Annotation Proteins:

  • Refseq:  XP_006351452.1  — PREDICTED: lysine-specific demethylase REF6
  • TrEMBL:  M1B7Y4  — M1B7Y4_SOLTU; Uncharacterized protein
  • TrEMBL:  M1B7Y5  — M1B7Y5_SOLTU; Uncharacterized protein
  • STRING:  PGSC0003DMT400039224  — (Solanum tuberosum)

Gene Ontology:

  • GO:0009741  — Biological Process — response to brassinosteroid
  • GO:0009826  — Biological Process — unidimensional cell growth
  • GO:0010228  — Biological Process — vegetative to reproductive phase transition of meristem
  • GO:0033169  — Biological Process — histone H3-K9 demethylation
  • GO:0035067  — Biological Process — negative regulation of histone acetylation
  • GO:0048366  — Biological Process — leaf development
  • GO:0005634  — Cellular Component — nucleus
  • GO:0003676  — Molecular Function — nucleic acid binding
  • GO:0046872  — Molecular Function — metal ion binding

Family Introduction:

  • Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.

Literature:

Sequences:

CDS Sequence:
  • >PGSC0003DMP400026611|Solanum_tuberosum|C2H2|PGSC0003DMP400026611
    ATGATACAATCAGCTTTGGAAATTGAAGAAGCTATACATGGCAATGGGGATTGGACTGTGAAATTAGACATCAACCTCTTCTACAGTGCCAATCTAAGCCGTTCTCCTCTCTATAGTAAGCAGATGCCTTATAACTTCATTATATACAATGCATTTGGTCGTAATTCTCCAGATAATACCCCAGAAAAATCAGAGTATACTGGGAGAGGGTCAGGGAAGCAGAGGAGAGCAATTGTTGCTGGGAAATGGTGTGGTAAAGTCTGGATGTCTAGTCAGGTTCATCCTCTGCTTGCTGAGAGGACTATTGATGAAGAACAAGAACAGAACAAAAGCATCTCAGCCCAGATTAAGATTGAGGTGAAGTCTGAGAGACCACGTGAAAGGACTCCAACTGGTAAAACTGTCTCTACAGCTTGCAAGACTGGAAAAAAGAGGAGTAGTACAGCAGTAAGTAGGAATGCTTCGAATGCTCAATTAATAATAGCAGATGATCATGATGATTCTTTACTTAGTAGTATCCTTCAGCAGCACCGGAAAACTAATCTTAGGAGTAAGAGGATTAAATATGAGACTCCTGAACCTCAAAAGGATGTTGATAAGAAGAAGATATTTGGCTCAATCATTGATGATGATCCAGATGGTGGGCCTAGCACCCGTCTGAGGAAAAGGATTCCAAAACCGAGCAACGAGTCGCCCGCCAAGTTGGTGAAGGTCAAACCAGCTCCAACTAAGCAGCACGAAAGCAAGAAAGGTCCCAAGGTCAAACTTCCTTCTGCAAATAGCAATGCAAAGAAAGAACCAGTAACGAAGGGTCCTAGAAGTAATATAGGTAAAAGGATGAGGGAGGAAGGAGAATATCATTGTGACTTGGAAGGGTGCAGTATGAGTTTTAGCTCAAAGCAGGAGCTTACATTGCATAAAAAGAATGTCTGTCCTGTGGAAGGGTGCAAGAAGAAGTTCTTCTCACACAAGTATTTGGTACAGCATCGACGGGTTCATATGGACGACCGTCCTCTGAAATGCCCTTGGAAGGGCTGCAAGATGACTTTTAAGTGGGCATGGGCTCGAACTGAACACATAAGAGTTCATACAGGTGCACGTCCTTATGCTTGCACTGAGACTGGCTGTGGCCAGACATTTCGTTTTGTGTCAGATTTCAGTCGTCACAAGAGGAAGACAGGTCACGTTTCGAAGAAGGGAAGAAGTTGA
Protein Sequence:
  • >PGSC0003DMP400026611|Solanum_tuberosum|C2H2|PGSC0003DMP400026611
    MIQSALEIEEAIHGNGDWTVKLDINLFYSANLSRSPLYSKQMPYNFIIYNAFGRNSPDNTPEKSEYTGRGSGKQRRAIVAGKWCGKVWMSSQVHPLLAERTIDEEQEQNKSISAQIKIEVKSERPRERTPTGKTVSTACKTGKKRSSTAVSRNASNAQLIIADDHDDSLLSSILQQHRKTNLRSKRIKYETPEPQKDVDKKKIFGSIIDDDPDGGPSTRLRKRIPKPSNESPAKLVKVKPAPTKQHESKKGPKVKLPSANSNAKKEPVTKGPRSNIGKRMREEGEYHCDLEGCSMSFSSKQELTLHKKNVCPVEGCKKKFFSHKYLVQHRRVHMDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYACTETGCGQTFRFVSDFSRHKRKTGHVSKKGRS*