Information report for PGSC0003DMP400026608
Gene Details
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Functional Annotation
- Refseq: XP_006351452.1 — PREDICTED: lysine-specific demethylase REF6
- Swissprot: Q9STM3 — REF6_ARATH; Lysine-specific demethylase REF6
- TrEMBL: M1B7Y2 — M1B7Y2_SOLTU; Uncharacterized protein
- STRING: PGSC0003DMT400039224 — (Solanum tuberosum)
- GO:0009741 — Biological Process — response to brassinosteroid
- GO:0009826 — Biological Process — unidimensional cell growth
- GO:0010228 — Biological Process — vegetative to reproductive phase transition of meristem
- GO:0033169 — Biological Process — histone H3-K9 demethylation
- GO:0035067 — Biological Process — negative regulation of histone acetylation
- GO:0048366 — Biological Process — leaf development
- GO:0005634 — Cellular Component — nucleus
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: Achn113981, CEY00_Acc26800
- Capsicum annuum: CA03g25230, T459_08258
- Nicotiana attenuata: A4A49_14224
- Nicotiana benthamiana: Niben101Scf02853g02002.1
- Nicotiana tabacum: XP_016435657.1, XP_016435656.1, XP_016468899.1, XP_016468900.1
- Petunia inflata: Peinf101Scf02778g00033.1
- Sesamum indicum: XP_011072922.1
- Solanum lycopersicum: Solyc03g111590.2.1, Solyc03g111590.3
- Vitis vinifera: VIT_17s0000g09980
Sequences
CDS Sequence:
- >PGSC0003DMP400026608|Solanum_tuberosum|C2H2|PGSC0003DMP400026608
ATGGCAGAGGCAAGTGGTAACATTGAGGTATTTTCATGGTTGAAAACCCTACCAGTGGCACCAGAGTATCATCCAACCCTAGAAGAATTCCAAGATCCCATTGCTTACATTTTCAAGATCGAAAAGGAAGCTTCTAAGTATGGAATTTGCAAAATTGTACCTCCAGTACCTGAACCACCGAAGAAGACTGCTCTTGCTAACCTAAACCGGTCACTGTCAGCTCGGGCCGGTTCTAATGGCCCAACATTTACTACTAGGCAGCAGCAGATCGGGTTTTGCCCAAGGAAGCACCGACCCGTTAAGAAACCCGTTTGGCAAAGCGGAGAAACCTATACGGTTCAGCAATTTCAGGCTAAAGCTAAAGCCTTTGAGAAGAATTACTTGAGAAAGAATTCCAAGAGAGCATTGACACCTCTTGAAGTTGAAACCCTTTATTGGAAAGCCACTGTGGATAAACCCTTTTCGGTGGAGTATGCAAATGACATGCCAGGTTCTGCATTTGCGCCAAAGAAGGCTTCTTTGGCAGCAGGGGGTATTGGGGAAGTGAGTACTCTGGCGGATACAGAGTGGAATATGAGAGGAGTGTCAAGGTCAAAAGGGTCTTTACTGAAGTTCATGAAAGAGGAGATCCCAGGGGTAACTTCCCCTATGGTGTATCTTGCCATGATGTTTAGTTGGTTTGCTTGGCATGTTGAGGATCATGACTTGCATAGCTTGAATTACCTGCATATGGGTTCTGGGAAGACTTGGTATGGTGTGCCCAGGGATGCAGCTGTGGCATTTGAAGAGGTGATCAGGGTCCAAGGTTATGCAGGAGAAACTAATCCTCTTGTTACCTTTGCTACACTTGGGGAGAAGACCACAGTCATGTCACCTGAAGTACTGCTTAGTGCTGGTATTCCTTGCTGCAGGCTGGTGCAAAATGCTGGAGAGTTTGTTGTTACCTTTCCACAAGCCTATCACTCAGGGTTTAGTCATGGATTTAATTGCGGGGAGGCTTCTAATATTGCTACTCCTGAGTGGTTGAGAGTCGCAAAAGATGCTGCAATCCGTAGAGCATCAACTAATTGTCCTCCAATGGTGTCACATTTCCAGTTGCTTTATGATCTAGCACTATCACTGTGTTCAAGAGTACCAAAGAACATTAGAATAGAACCAAGGAGTTCTCGCCTGAAGGACAAGAAAAAGAGTGAAGGAGATATGTTGGTCAAAGAACTATTTGTTGAGGATTTGAACTCTAACAATTATCTTCTTCACATTCTTGGAGAAGGATCACCTGTTGTACTTCTCCCTCAAAACTCTACTGGGATTTCTATTTGCTCTAATTTAGTAGCTGGATCCCAGTCAAAGGTAAATTCCAGGTTGTTCCCCAGTTCATCCAGTTCAGATCATGAGGTGAAGAGTAAAAAAGGTTCCGCATATGATGATCTCAAACTAGGCAGGAAACAGGGGATGGAACAATTTGCAGGCATCTCTTTAGAGAAGGGAAAGTACTCTTCTTGGCACACTGGTAACAGACTGCCAGACTCTGGCAGAAAGGATGATGCCCAATCTTCTCCAGACACCGAAAGGGTGAACCTGGACACTGCAAGAGGAATGACTTACAAATGCGATACACTGTCGGAGCAAGGACTTTTTTCTTGTGCAACTTGTGGGATCCTATGTTATACGTGTGTGGCCATAATTCGACCAACAGAAGTAGCTGCTCATCATTTGATGTCATCTGATTATAGTAATTTCAATGACTGGACAGGAAGTGTAAGTGGCGTAACTGCTACTGGTAGGGACCCAAATGCTGCAGAATCAGATTCCAGTTCTGGACGGTTTGTTAAAAGGGCTCCTGCCTTGATTGATGTCCCAGTAGAGTCATCTGATCGAATTCAGAAATTGAATAATGGAAGTGTAGAAGGGTTTTCAAGGACCAAAGCACACAAAGAAACTTCTTCCCTCGGCCTGTTGGCTTTAGCTTATGCCAATTCGTCAGATTCTGATGAAGACGAGGTTGAAGCAGATATTCCTGTTGAAGCTTGTGAAAGCAGACATACAGATTCTGAGGATGAGGTTTTTCTCCGAGTTATTGATCCTTACGGAAACCACAGACAAAAGAGAGCTGTATCTCAAGGTAGAAACTGTCAAAAAACTGACAATTCCGTTCAGTTGGAGAATGAAAGTTACCCATCAGGGGAATCAAATACTCTGTTAGGTAGGTCAAGCCATCAACCAAGATCCCATCAAGTCGCTGCAAAGTGTATTTCCAATATAGGAGAAATAGTACAAAACAATGCTGTTGCTCCATTTGATCATGCACGTATGCAATTTACTTCAACATCTGATGAAGACTCTTTCAGAATACATGTATTCTGTCTCCAGCATGCTGTACAAGTAGAAGAACAGCTCCGTCGAATTGGTGGAGCACGTATTTCTCTTCTTTGTCATCCAGACTATCCCAAGCTAGAAGCTCAAGCTAAACAAGTGGCTGAAGAGTTGGGGAGTGATCATTTCTGGAGAGAGATTTCATTCCGCGAGGCCACTAAAGATGATGAGGAAATGATACAATCAGCTTTGGAAATTGAAGAAGCTATACATGGCAATGGGGATTGGACTGTGAAATTAGACATCAACCTCTTCTACAGTGCCAATCTAAGCCGTTCTCCTCTCTATAGTAAGCAGATGCCTTATAACTTCATTATATACAATGCATTTGGTCGTAATTCTCCAGATAATACCCCAGAAAAATCAGAGTATACTGGGAGAGGGTCAGGGAAGCAGAGGAGAGCAATTGTTGCTGGGAAATGGTGTGGTAAAGTCTGGATGTCTAGTCAGGTTCATCCTCTGCTTGCTGAGAGGACTATTGATGAAGAACAAGAACAGAACAAAAGCATCTCAGCCCAGATTAAGATTGAGGTGAAGTCTGAGAGACCACGTGAAAGGACTCCAACTGGTAAAACTGTCTCTACAGCTTGCAAGACTGGAAAAAAGAGGAGTAGTACAGCAGTAAGTAGGAATGCTTCGAATGCTCAATTAATAATAGCAGATGATCATGATGATTCTTTACTTAGTAGTATCCTTCAGCAGCACCGGAAAACTAATCTTAGGAGTAAGAGGATTAAATATGAGACTCCTGAACCTCAAAAGGATGTTGATAAGAAGAAGATATTTGGCTCAATCATTGATGATGATCCAGATGGTGGGCCTAGCACCCGTCTGAGGAAAAGGATTCCAAAACCGAGCAACGAGTCGCCCGCCAAGTTGGTGAAGGTCAAACCAGCTCCAACTAAGCAGCACGAAAGCAAGAAAGGTCCCAAGGTCAAACTTCCTTCTGCAAATAGCAATGCAAAGAAAGAACCAGTAACGAAGGGTCCTAGAAGTAATATAGGTAAAAGGATGAGGGAGGAAGGAGAATATCATTGTGACTTGGAAGGGTGCAGTATGAGTTTTAGCTCAAAGCAGGAGCTTACATTGCATAAAAAGAATGTCTGTCCTGTGGAAGGGTGCAAGAAGAAGTTCTTCTCACACAAGTATTTGGTACAGCATCGACGGGTTCATATGGACGACCGTCCTCTGAAATGCCCTTGGAAGGGCTGCAAGATGACTTTTAAGTGGGCATGGGCTCGAACTGAACACATAAGAGTTCATACAGGTGCACGTCCTTATGCTTGCACTGAGACTGGCTGTGGCCAGACATTTCGTTTTGTGTCAGATTTCAGTCGTCACAAGAGGAAGACAGGTCACGTTTCGAAGAAGGGAAGAAGTTGA
Protein Sequence:
- >PGSC0003DMP400026608|Solanum_tuberosum|C2H2|PGSC0003DMP400026608
MAEASGNIEVFSWLKTLPVAPEYHPTLEEFQDPIAYIFKIEKEASKYGICKIVPPVPEPPKKTALANLNRSLSARAGSNGPTFTTRQQQIGFCPRKHRPVKKPVWQSGETYTVQQFQAKAKAFEKNYLRKNSKRALTPLEVETLYWKATVDKPFSVEYANDMPGSAFAPKKASLAAGGIGEVSTLADTEWNMRGVSRSKGSLLKFMKEEIPGVTSPMVYLAMMFSWFAWHVEDHDLHSLNYLHMGSGKTWYGVPRDAAVAFEEVIRVQGYAGETNPLVTFATLGEKTTVMSPEVLLSAGIPCCRLVQNAGEFVVTFPQAYHSGFSHGFNCGEASNIATPEWLRVAKDAAIRRASTNCPPMVSHFQLLYDLALSLCSRVPKNIRIEPRSSRLKDKKKSEGDMLVKELFVEDLNSNNYLLHILGEGSPVVLLPQNSTGISICSNLVAGSQSKVNSRLFPSSSSSDHEVKSKKGSAYDDLKLGRKQGMEQFAGISLEKGKYSSWHTGNRLPDSGRKDDAQSSPDTERVNLDTARGMTYKCDTLSEQGLFSCATCGILCYTCVAIIRPTEVAAHHLMSSDYSNFNDWTGSVSGVTATGRDPNAAESDSSSGRFVKRAPALIDVPVESSDRIQKLNNGSVEGFSRTKAHKETSSLGLLALAYANSSDSDEDEVEADIPVEACESRHTDSEDEVFLRVIDPYGNHRQKRAVSQGRNCQKTDNSVQLENESYPSGESNTLLGRSSHQPRSHQVAAKCISNIGEIVQNNAVAPFDHARMQFTSTSDEDSFRIHVFCLQHAVQVEEQLRRIGGARISLLCHPDYPKLEAQAKQVAEELGSDHFWREISFREATKDDEEMIQSALEIEEAIHGNGDWTVKLDINLFYSANLSRSPLYSKQMPYNFIIYNAFGRNSPDNTPEKSEYTGRGSGKQRRAIVAGKWCGKVWMSSQVHPLLAERTIDEEQEQNKSISAQIKIEVKSERPRERTPTGKTVSTACKTGKKRSSTAVSRNASNAQLIIADDHDDSLLSSILQQHRKTNLRSKRIKYETPEPQKDVDKKKIFGSIIDDDPDGGPSTRLRKRIPKPSNESPAKLVKVKPAPTKQHESKKGPKVKLPSANSNAKKEPVTKGPRSNIGKRMREEGEYHCDLEGCSMSFSSKQELTLHKKNVCPVEGCKKKFFSHKYLVQHRRVHMDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYACTETGCGQTFRFVSDFSRHKRKTGHVSKKGRS*