Information report for PGSC0003DMP400011381
Gene Details
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Functional Annotation
- Refseq: XP_006364865.1 — PREDICTED: uncharacterized protein LOC102582612 isoform X2
- TrEMBL: M1A7M7 — M1A7M7_SOLTU; Uncharacterized protein
- STRING: PGSC0003DMT400016425 — (Solanum tuberosum)
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Juglans regia: WALNUT_00023343-RA
- Nicotiana benthamiana: Niben101Scf02537g13011.1, Niben101Scf00477g00010.1
- Nicotiana tabacum: XP_016460963.1, XP_016479571.1
- Petunia inflata: Peinf101Scf00657g05024.1
- Populus trichocarpa: Potri.002G097700.6, Potri.002G097700.5, Potri.002G097700.3, Potri.002G097700.1, Potri.002G097700.2, Potri.002G097700.4
- Prunus mume: XP_008237173.1, XP_008237174.1
- Prunus persica: Prupe.8G062800.2.p, Prupe.8G062800.1.p
- Sesamum indicum: XP_011100981.1
- Solanum lycopersicum: Solyc04g074250.1.1
Sequences
CDS Sequence:
- >PGSC0003DMP400011381|Solanum_tuberosum|C2H2|PGSC0003DMP400011381
ATGGCTTCCGTTACCGTCGATTCTTCTTCCGCCACCGTCCCTGACGGCGCACTTCAAGCAGAATCAATCCCAACCGTTGATCTCCGACTCCTTTCTCAATCTGAACTTTACTCTCTCTCCCTCTGTTCCACCGCTGCTTTCAACCCTTGCCGGGACGACGATGTCATTATCCCTAAAATCGACCGTTCGGTTTTCAATGAATCCGCTGGGTCCCGCAAACAAACCTATTCCCGTCTCCGTCTTGCCCCCGCTGCTGCTGCCTCTGCTTCCTCCTCCGCCATCCGTAGCCGTACACCTCACCTCCGTAATTCTCCTCACCCTCTTCAGAATCCATCTCCAAACAATGGCCCAGCGAATTCGGAGAGTTCCCAAATCGTTATCCTTCTTAAACAACTATTTGGTTCGGGTACTCAAAAGAACCCTACCGATTTGGTACCTATCCGGGTTGATTATTCCGATTCCTTATCTGTGCCCTCGCATGTGCCTGTTCCCGGGCTCGAATTGGCCAATGTGGGTTCAGTTGGGCAGAAAAGGAAACGAGGTCGGCCTAGGAAGAATGAGAATGGTGTCCGGGTGGCTGAGGTTAAAGTGGATGAGGTAGTGAAGGACATTGTAGTTTATCAAAATGTGGATGATAGCGATAAAGAGATCATGAATAAGGATGGTATACCAGTGGATTTGGCAGTTCTAGGAGCATTGGTGGATCCGTTTGGCCTAGAACTGAGGCGGAGGACAGAGGGGTTGGGGAGTGCAGAGGAGTTGTTAGGGTTTCTGGGGAGATTGAATGGGCAATGGGGGAGTACGCGAAAGAAGAGGAGGATAGTGGATGCAGATGAGTTTGGGAGTGTGCTGCCAAAAAGTTGGAAGCTTTTGCTTTCTATTAAGAGGAAAGAAGGCCGTTCATGGTTGCATTGTCGACGCTACATAAGCCCTAATGGACGGCAATTTGGCACATGCAAGGAAGTCTCTTCATATTTGCTATTTCTTCATGGTGAAAGGAAGGAAAATCTTCCAGCATATGCGAACGGCAGTGGAACTGTTGAGATCACCAATGCATGTGCTTTGACTTCAGATCTCAGAATTCAAGATGGTGGCAAAAAGGAAAGCTCTGTTTTTCATAACTCATCCCCTGCTGTTGGTCATGGGGAGTTGCAAGTTCTAGTGAATTTTGGAGAACTATCGGAGGTCCAAGTAGGAGATCTCTTGCACTGTGACAAATGCAATGTGACGTTTAATAATAAGGATGATTTATTGCAGCACCAGTTATTTTCCCATCAGAGAAGGAGATCTAGAAATGGTGGTCAATCCATTACTGACGGGGTAATAATTAGAGACGGAAAATTTGAATGTCAATTCTGCCACAAGACATTTGAAGAAAAGCATCGATACAATGGTCATGTTGGGAACCATGTTAAGAAGCAGGTAAAGACTGTGGATGGATCGCTTCCAATCAAATTGGGAGGGGGTGTTGAACCTGTGGTGCCTAGCGGAGCCATGCTGAGGGATCCCATTATGCAGGATTCAGTTGTTTTGCCGAGGAACTTGACAGAAAATGCTGGTGTAATTACAGATGCCGGTGACAATCCTGCACCAACTAGTAAAATTCAGGAGGAGGATCACATGGAGACTGACGATAAACTAGAAGCTGAAGGAACCAGTAATGGTTGTCATAACCAGGAAGGGAGTTCTGTGAGCCGTTCCCCTATTTCATCGAATGAAAAAACATGTGTGGATATAAGCAAAGTAATTGTCGGCTCCAACATAGAAGTACCTGAACAGGAAGGTTTACTTTGTTCAAATGACATTGTTGATTCGTGTGGTGTTAGTATGGAAGATGGCAATTTTTTCCCTACAGTGGATGAGAGCAAAGTAGATGGTAGGTCTGTAGATACTGAGTCAACAACTGTTTTATGCAGTAATGCCAGTCTGCCGGGTGGGAATAGTTTGATAAAAGCCAGACAAATTCCACATACTGAAGATCACTCAGGGAAGAACATTGATGATCTGAATGGTGTATCCTTTCTGGCAGAAACATCTAAAGGAAACAGAGATTTAAAGAGCAGCACAGGTACCCCATCTTGTGACAAGGAAGGATCCACTGTAGATTATGTCGGAGTTCTTTCTGGTTGCGTAGGTGAGCATAAACCTAGTAGCATGATGTCTGATATGGAAAATAAGGAGTGTGGCAGTCTTGTTGATTCAAATGACAATAAGCTGATTATGAAAGAGGACAATCATGCATTTGTTCCACATCCAGATAAACATGTAAATACAGCTGAAAGAGATGTGGTTGATGTTTCTGCTTGCATTCTAGAGGAGCTTGGACAGAAGAAAGGTGATGAGAGTAGTCTGCTTTCTCCGGCATGTGACAAGAACAGTGAGGTTGAATCTCTGATTTTTAATGATTTGAAAACAAGTGCAGATGAGCCCAAGATTAGTGAGCTGCAGAGTGTTAGAAGTAATATAGTGGGATTTACTTCTAGTGACAATCATGCTGTGAAAAAAGTTGCTGCCAGTGACATAGAGAAGGAAAAAAGTCTTGCATTCTCCCCGCTTTTTCCTGCCATGAATGCAAGGGCATCATGTGCAGAAGATGACTATACCAAAGTTTACCAAAGCACACTGGAAGGTAATGATCTGCAAAGGTCTGCAAGTGCATTGTTTTCTACAACCAACGTACCAGAAGCTTCTACCAAGGAATATACCATGCACAGGAGCTATAACAACTCTTTGAAAGAATCTAAATTTGATTGTCTAGAAAACCCTAGACATCATGATCTAAATGTTGTTTTCGACAATTCTCATGTGGATCTAGGTGTAAATTTGAACTGCACAACTTTCCAACTTGGCATGGAGGAAACATATGGTGTTCAGGATAATCTCCAGAAAAGATTGGAGACCGATAAACATGGAGAAGTAGGGATTGATTTAAGGGATTCATCTTTCAAGGAAAAAGCAGGGGATTTTGGAAGTAATTTCAACACCGTTTTTCATAGTCAGTTGTGGAATGAACACAAATTAGATGAAGTTGATAACTCTGGAAAGAAGATCATTACTAGTTTTGGTTGTGGAGATGCCAAACCTAATGAGGATGTCATGGCTGGAAGTATTTGGAGAGCGGGTGTAGAAAATGTCATGCAAGGTGGCTCAGCAGACAATTCAACCTCAGTAGCGCAGTCATCTAATTGTTTCCAGACTTATGATGTTTTGTCAGATAAGGTTCCCAATCTTTTTGGAGAGAATGAGAAGTATGATGGCAACACTGGCTTTGATGGGTTGAGCTCAGACAGAAGTGGACCAGTGGAATATAGTTTCATGAGCACACAAAGTTCAAATTCCCTTCAAGAAGAGCCTCGAGTTTTACCTTACGATGTGGATATAGAACAAGGATTTAATTCGTCATTTTGGCTCGGAAAAGACAATTTAATGCCAAATTTAGCTGGCAGTAATCAGGTGACTATGGTATGCGTTTGGTGCAGAAATCTGTTTTATCAAGATTCTAACCAGTTAGAAGCTGGTTCAATTGGTGCAATGTGTCCAACCTGCAGTGGAAGTACTGCAGGGCAGTTTAGCTTTATGTAG
Protein Sequence:
- >PGSC0003DMP400011381|Solanum_tuberosum|C2H2|PGSC0003DMP400011381
MASVTVDSSSATVPDGALQAESIPTVDLRLLSQSELYSLSLCSTAAFNPCRDDDVIIPKIDRSVFNESAGSRKQTYSRLRLAPAAAASASSSAIRSRTPHLRNSPHPLQNPSPNNGPANSESSQIVILLKQLFGSGTQKNPTDLVPIRVDYSDSLSVPSHVPVPGLELANVGSVGQKRKRGRPRKNENGVRVAEVKVDEVVKDIVVYQNVDDSDKEIMNKDGIPVDLAVLGALVDPFGLELRRRTEGLGSAEELLGFLGRLNGQWGSTRKKRRIVDADEFGSVLPKSWKLLLSIKRKEGRSWLHCRRYISPNGRQFGTCKEVSSYLLFLHGERKENLPAYANGSGTVEITNACALTSDLRIQDGGKKESSVFHNSSPAVGHGELQVLVNFGELSEVQVGDLLHCDKCNVTFNNKDDLLQHQLFSHQRRRSRNGGQSITDGVIIRDGKFECQFCHKTFEEKHRYNGHVGNHVKKQVKTVDGSLPIKLGGGVEPVVPSGAMLRDPIMQDSVVLPRNLTENAGVITDAGDNPAPTSKIQEEDHMETDDKLEAEGTSNGCHNQEGSSVSRSPISSNEKTCVDISKVIVGSNIEVPEQEGLLCSNDIVDSCGVSMEDGNFFPTVDESKVDGRSVDTESTTVLCSNASLPGGNSLIKARQIPHTEDHSGKNIDDLNGVSFLAETSKGNRDLKSSTGTPSCDKEGSTVDYVGVLSGCVGEHKPSSMMSDMENKECGSLVDSNDNKLIMKEDNHAFVPHPDKHVNTAERDVVDVSACILEELGQKKGDESSLLSPACDKNSEVESLIFNDLKTSADEPKISELQSVRSNIVGFTSSDNHAVKKVAASDIEKEKSLAFSPLFPAMNARASCAEDDYTKVYQSTLEGNDLQRSASALFSTTNVPEASTKEYTMHRSYNNSLKESKFDCLENPRHHDLNVVFDNSHVDLGVNLNCTTFQLGMEETYGVQDNLQKRLETDKHGEVGIDLRDSSFKEKAGDFGSNFNTVFHSQLWNEHKLDEVDNSGKKIITSFGCGDAKPNEDVMAGSIWRAGVENVMQGGSADNSTSVAQSSNCFQTYDVLSDKVPNLFGENEKYDGNTGFDGLSSDRSGPVEYSFMSTQSSNSLQEEPRVLPYDVDIEQGFNSSFWLGKDNLMPNLAGSNQVTMVCVWCRNLFYQDSNQLEAGSIGAMCPTCSGSTAGQFSFM*