Information report for PEQU_38228
Gene Details
|
|
Functional Annotation
- Refseq: XP_020599580.1 — lysine-specific demethylase JMJ705-like
- Swissprot: Q9STM3 — REF6_ARATH; Lysine-specific demethylase REF6
- TrEMBL: A0A2I0W811 — A0A2I0W811_9ASPA; Lysine-specific demethylase REF6
- STRING: XP_008797141.1 — (Phoenix dactylifera)
- GO:0009741 — Biological Process — response to brassinosteroid
- GO:0009826 — Biological Process — unidimensional cell growth
- GO:0010228 — Biological Process — vegetative to reproductive phase transition of meristem
- GO:0033169 — Biological Process — histone H3-K9 demethylation
- GO:0035067 — Biological Process — negative regulation of histone acetylation
- GO:0040010 — Biological Process — positive regulation of growth rate
- GO:0045815 — Biological Process — positive regulation of gene expression, epigenetic
- GO:0048366 — Biological Process — leaf development
- GO:0005634 — Cellular Component — nucleus
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
- GO:0071558 — Molecular Function — histone demethylase activity (H3-K27 specific)
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: CEY00_Acc26800, CEY00_Acc18068, Achn375731
- Manihot esculenta: Manes.14G055900.1.p, MANES_14G055900
- Musa acuminata: Ma11_g08350, Ma06_g01490, Ma10_g03830, GSMUA_Achr11P08770_001, GSMUA_Achr11P11060_001
- Populus trichocarpa: Potri.015G089000.1, POPTR_015G089000v3
- Rosa chinensis: RchiOBHm_Chr7g0191461
- Saccharum spontaneum: Sspon.03G0028610-3D, Sspon.03G0028610-1P
Sequences
CDS Sequence:
- >PEQU_38228|Phalaenopsis_equestris|C2H2|PEQU_38228
ATGGGGGTTGAGCCGCCGCTGGTTGAGATCCTCCCATGGCTGAAGTCCCTTCCGGTGGCGCCCGAGTACCACCCGACACTCTCGGAGTTCCAGGACCCAATCGCTTACATCCTCAAGATCGAGAAGGAGGCCTCTGCCTACGGCATCTGCAAGATCGTTCCCCCGCTTCCCGCCGCTCCTAGGAAGACCGTCTTTGCCAACCTTAACAAATCTTTTGCTGCTCGCCCACAAAACCCTAACTCTAGTCCTAGCACAAACCCTAGTTCCAACTCCAACTCCAAGCGTTCCCCGACTTTCTCCACGCGCCAGCAGCAGATCGGTTTCTGCCCCCGCCGTCCTCGCCCTGTCCAGAAGCCCGTTTGGCAGAGCGGTGACTGCTACACTCTCTCCCAATTCGAGGCCAAGGCCAAGCTCTTCGAACTCTCCTACCTCTCCAAGTCAGCCCCTGCTTCTGCTACTGCTGCTTCTGCTGCCGCCACCTCGTCTGGCTCTTCCTCCCGAAAGAAGAAGAAAATCAAGCTCAAGAAAAGGCAGAAAAAGAGTAGCAAATTGTTTTCTTCGTATCTCTCAGCTCTTGAAGTTGAGACCCTTTACTGGAAAGCCTGTGCCGACAAGCCCTTCTCTGTGGAGTACGCCAATGACATACCAGGCTCGGGCTTTCCGCCCATTGGAAGCCCCACGGGCAAGAGGTGGAGGGAGGAGGAGGCGGCAAGCAATGTGGGGGAGACTGCCTGGAATATGCGGGGGGTGTCACGGGCTAAGGGCTCGCTTCTGAGGTTCATGAAAGAAGAAATTCCTGGAGTGACTTCTCCTATGCTCTATGTGGCCATGATGTTCAGTTGGTTTGCCTGGCATGTGGAGGATCATGAGCTACATAGCTTGAATTACTTGCACTTGGGCGCTGGGAAGACCTGGTATGGGGTACCAAGGGATGCGGCTCTTGCATTTGAGGACGTTGTAAGGATTCATGGATACTGCGGAGAAGTCAATCCTTTGATGACATTTACTCTCCTGGGGGAGAAAACCACTGTTATGTCTCCTGAAGTGCTTATAGATGCGGGAATTCCATGCTGCAGATTGGTTCAAAATGCTGGAGAGTTTGTTGTCACTTTCCCTGGATCATATCATTGTGGATTTAGCCATGGATTTAATTGTGGTGAGGCAGCAAATATTGCTACTCCTGGATGGTTAAGAGTAGCAAAAGAAGCTGCAATTCGGAGGGCATCCACTAATTATCCACCCATGGTGTCTCATTTTCAGTTGCTCTATGCTCTGGCACTGTCGTTGTGCTCAAGAATGCCTATATGTGGAAATAATGAGCCAAGGAGTTCAAGACTAAAAGATAAGTTGCAAGGTGAAGGAGAACTCATGGTTAAAAAAACTTTTGTTCAGAGTGTTGCTGAGACTAATGAACTTTTAAGCTGTCTACTTGAGAAGGGATCCTCTTGCATTGTTCTTCCACAGAATACATCAGATAGTCCTTTATCATCAAATTCTCTTGTCAGATCTAAAGTAAAGCTTAAACCAAGATTATCACTTGGGCTGTGCAGTCGAGAGGAAGCATTGAAAGCATCCAGAGCCTTACCTTGTGATGATGTAATGCAGGAAAGGAACACTGGGATGAAACATTTAAGTGGTTTTGGTTCTCTAAAAGGAAACTCTGTGGCTGTGTACCACAGAAAAAAGCATTCTGCAGCGTCAAACAACAAATCTGTAACGACTGAGGCTGCATCTTCCATGCTTGAGTTGCAGAATTTAAAAGAGGAGAAAGATAGTAATCTTGAAGGTGATGGGCTGTTGGATCAGGGACTTCTATCATGTGTTACATGTGGGATATTAAGCTTTGCCTGTGTAGCTGTTGTTGAACCAAGAGAAGCTGCGTCTAGATACCTGACTTCTTCTGGTTGCAGCTCTCTTTTTGACCAGAGTTTTGGTTCTGGAGAAATTAATGATGTAGCCCTTGACACAAAATTGCAGCGTAGCGACGACTGTTTAGGAAGAAAGGACGGGGACGTGAAGGATACATTAGTTGAAAAGATGGACCATTCCACTAGATATTCAACCCAAGATTCAGTTCCTATTGAAGTGGGTTCTGAAAATTCCAAACAGAATGGCTTATCTGCGCTGGATCTCTTAGCTTCTGCTTATGGAGGTGAGTCTTCAGACTCTGATGATGAAAGACTTCCACATGAGATGCCTGCTTGTACACATGAGAATTTTGCAAATGAATTCTTACTGTCATATAGACTGGACAATGATCGGGTTGCAACTAAGCACCCAGATCTATGGTTTGGTAAGGTTCCTTTTGCAGAAATGGAGCAGGAGTTGGTTGGTGCAAAATGCCAAAATGCAGTAGCTGCTGAGAATTTTTGTCGCACAACTTCTAATGACCCAAATTATCTAAGTCAGAGTGCTGATGACAGATATCTTCTGAAATTGGATTCTAGATGTTACAAGCCAGAACACAAAAAGTCTTTGGCACCACATAGTATGAAGGATAGTTCATGTAGTTCAATTTGGTCTCTCGGAGGGTCAATCAACTCTAGTAGAATGGAGTTTAGAAGCAGTTATCATAATTCTGGAACACAGGATGTTCATGAAACAAATATGAAGATGCAGGTCACAACACCTTGTTCAGATGATTTTTCTTTGTGCATTGCTCCCTGCTATGGAAGTGATTTACCTTCTGAAAATTCGAACGGAGCAACTCAATTAATAAGTTATCACTCTGACATGAAAAAGGCAGCAGTATCAGCTATACAGAGATCTGATAAAGATTCATCTAGAAAGCATGTCTTCTGCCTTCAACATGCAATGGAGGTTGAAAAGAAACTCTGTTCGATTGGTGGTGTCCATATTATGCTATTATGCCATCCAGACTATCCTAAAATTGAAGCAGAGGCAAAGGCATTGGCAGAGGAATTAGGAATTAATTATGCATGGAACAAGATTGATTTCATGGAGGCTACTGAAAAGGATCATGAAAGAATTCAAGCAGCTTTGAAGGATGAGGAGAGCATACCCACTAATAGTGACTGGGCAGTCAAACTCGGTATCAATCTATATTACAGTGCTAGTCTTAGCAAATCTCCACTGTACAGCAAGCAGATGCCATACAATGAAGTCATTTACAAGTCATTCAGCTGCAATTCACCGAATAGTTCTATGGTGAAAACAAAGGGTTCCGGAAAGAGACAAGGTCGGCAGAAGAAAATAGTTGTCGCTGGCAAGTGGTGTGGGAAGGTTTGGATGTCAAATCAAGTTCATCCTTATTTGGCTCAACGAAAGGATGCTCAAGATGAAGAGTCAGAGGAAGGACCCTTTGCACAAGGTGGTATGACTAATCCAAGTTCTATCAATGGATCAGAATCTAATGGGAGTTCTGCTAATGGTAGCAGCCTTGCTTCAAAAAAATCTAAAAAGAGGAAGAAAAGGCCAATGCTGAAGTCCAATGGCAAGAGACGGAGGTTTAACCAATCAAATGACATTTTAGAAGTCATTGAAGATGATGACAAAGTTTCTCAGACAGATAAAGGTAGGATTCTTCGAAGCAAAAATCGATTGAAGCATAAAACTGACTCTGAAGGAGGGCCAAGCTCTCGTCTCAGACAAAGACCAATGAAATCTGAAGATACCAAACTCGTTAAACCAAGCTTCAAAAAACAAAATGAGAAAAGAGCCAAGGGAGGCCAGCCTCCTAAGTCATATGATGATGAGGGGGAGTACACATGTGACATTGAAGGCTGCTCTTTGAGCTTTAGCACGAAGCAAGAGCTATCACTGCACAAACGGGATATATGCCCCGTTAAAGGGTGCGGGAAAAAATTGTTCTCGCACAAGTACATGATGCAACATCGCAAAGTTCACATGGATGACCGTCCACTTCAGTGTCCATGGAAGGGGTGCAAGATGACATTCAAGTGGGCTTGGGCTCGAACTGAGCATATAAGAGTTCACACTGGAGATCGTCCTTATATATGCCGTGAACCTGGATGTGGTCAAACATTCCGATTTGTGTCAGACTTCAGCCGTCACAAGAGGAAGACTAATCACTCCGCAAAGAAGTTCCGGCGAAGTTGA
Protein Sequence:
- >PEQU_38228|Phalaenopsis_equestris|C2H2|PEQU_38228
MGVEPPLVEILPWLKSLPVAPEYHPTLSEFQDPIAYILKIEKEASAYGICKIVPPLPAAPRKTVFANLNKSFAARPQNPNSSPSTNPSSNSNSKRSPTFSTRQQQIGFCPRRPRPVQKPVWQSGDCYTLSQFEAKAKLFELSYLSKSAPASATAASAAATSSGSSSRKKKKIKLKKRQKKSSKLFSSYLSALEVETLYWKACADKPFSVEYANDIPGSGFPPIGSPTGKRWREEEAASNVGETAWNMRGVSRAKGSLLRFMKEEIPGVTSPMLYVAMMFSWFAWHVEDHELHSLNYLHLGAGKTWYGVPRDAALAFEDVVRIHGYCGEVNPLMTFTLLGEKTTVMSPEVLIDAGIPCCRLVQNAGEFVVTFPGSYHCGFSHGFNCGEAANIATPGWLRVAKEAAIRRASTNYPPMVSHFQLLYALALSLCSRMPICGNNEPRSSRLKDKLQGEGELMVKKTFVQSVAETNELLSCLLEKGSSCIVLPQNTSDSPLSSNSLVRSKVKLKPRLSLGLCSREEALKASRALPCDDVMQERNTGMKHLSGFGSLKGNSVAVYHRKKHSAASNNKSVTTEAASSMLELQNLKEEKDSNLEGDGLLDQGLLSCVTCGILSFACVAVVEPREAASRYLTSSGCSSLFDQSFGSGEINDVALDTKLQRSDDCLGRKDGDVKDTLVEKMDHSTRYSTQDSVPIEVGSENSKQNGLSALDLLASAYGGESSDSDDERLPHEMPACTHENFANEFLLSYRLDNDRVATKHPDLWFGKVPFAEMEQELVGAKCQNAVAAENFCRTTSNDPNYLSQSADDRYLLKLDSRCYKPEHKKSLAPHSMKDSSCSSIWSLGGSINSSRMEFRSSYHNSGTQDVHETNMKMQVTTPCSDDFSLCIAPCYGSDLPSENSNGATQLISYHSDMKKAAVSAIQRSDKDSSRKHVFCLQHAMEVEKKLCSIGGVHIMLLCHPDYPKIEAEAKALAEELGINYAWNKIDFMEATEKDHERIQAALKDEESIPTNSDWAVKLGINLYYSASLSKSPLYSKQMPYNEVIYKSFSCNSPNSSMVKTKGSGKRQGRQKKIVVAGKWCGKVWMSNQVHPYLAQRKDAQDEESEEGPFAQGGMTNPSSINGSESNGSSANGSSLASKKSKKRKKRPMLKSNGKRRRFNQSNDILEVIEDDDKVSQTDKGRILRSKNRLKHKTDSEGGPSSRLRQRPMKSEDTKLVKPSFKKQNEKRAKGGQPPKSYDDEGEYTCDIEGCSLSFSTKQELSLHKRDICPVKGCGKKLFSHKYMMQHRKVHMDDRPLQCPWKGCKMTFKWAWARTEHIRVHTGDRPYICREPGCGQTFRFVSDFSRHKRKTNHSAKKFRRS