Information report for PEQU_28844
Gene Details
|
|
Functional Annotation
- Refseq: XP_020592304.1 — lysine-specific demethylase JMJ705-like
- TrEMBL: A0A2I0B0F4 — A0A2I0B0F4_9ASPA; Lysine-specific demethylase REF6
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Beta vulgaris: Bv_008490_cjwm.t1, BVRB_008490
- Musa acuminata: Ma11_g08350, Ma06_g01490, GSMUA_Achr11P08770_001
- Panicum virgatum: Pavir.9NG271400.1.p, Pavir.5KG706100.1.p
- Prunus avium: Pav_sc0000522.1_g100.1.mk
- Prunus mume: XP_008239384.1
- Prunus persica: Prupe.5G159200.1.p, PRUPE_5G159200
- Setaria italica: Seita.5G420700.1.p, SETIT_000062mg
- Setaria viridis: SEVIR_5G426200v2, Sevir.5G426200.1.p
Sequences
CDS Sequence:
- >PEQU_28844|Phalaenopsis_equestris|C2H2|PEQU_28844
ATGGCACTGGACCCTGTTTTCTCTGAGGTCCTCCCATGGCTCAAGACCCTCCCCCTAGCTCCGGAGTACCACCCAACCCTAGTAGAGTTCCAAGACCCAATCGCTTACATCCTGAAGATCGAACAGGAGGCCTCCCGCTACGGCATCTGCAAGATCGTTCCCCCTGTCCCCGCCGTCCCCAAGGCCATCGCTGTCACCAACCTGAACCTCTCCTTTTCGGCTCGCTCACCCTCTGGCGATCCCACATTCACCACGCGCCAACAGCAGATCGGCTTCTGCCCGCGGCGCCCACGCCCTGTCCAGAAATCAGTTTGGCAGGAGGCTAAAGCACGTAGCTTCGAGCGTGCCCACCTTCGAAAGTGCCGCAAGAAGAACAAGTCTTCTTCCTCGCTTTCTCCCATTGAGGTTGAATCCCTCTTCTGGAAGACGGCAGCCGACAAGCCCTCCTCAGTAGAATACGCGAATGACATACCGGGCTCCGGATTTTCGAAGCTGAGGGAGGAGGAGATCGATATGACGGCTGCTGAGAATGTGGGAGAGACGGCGTGGAATATGAGGGGAGTGGCAAGGGCGAAGGGGTCGCTGCTGAGGTTTATGAAAGAGGAGATCCCAGGTGTGACATCGCCCATGGTGTATGTGGCCATGCTTTTTAGCTGGTTTGCCTGGCACGTTGAGGATCACGACCTGCATAGCTTGAATTTTTTGCATATGGGTGCGGGTAAGACTTGGTATGGAGTGCCGAGGGATGCGGCCCTGGCATTTGAGGAGGTCGTCAGGGTACATGGCTATGGTGGGGAGGTGAACCCTTTGATAACATTTGCTACCTTAGCAGAGAAGACAACCCTTATGTCTCCTGAAGTGCTTATTGGTTCGGGAATTCCTTGTTGCAGGTTGGTGCAGAATGCTGGAGAATTTGTTGTTACTTTTCCAGGATCTTACCACTCAGGTTTCAGCCATGGATTTAACTGCGGAGAAGCATCAAATATTGCAACTCCCGAATGGCTAAAAGTAGCCAAAGAAGCAGCAATTAGGAGGGCATCAACAAACTGTCCTCCTATGGTTTCTCACTATCAGCTGCTTTATGCTCTTGCTTTGTCCCTGCATACAAGGAACCCTTCTAGAATTCTTTCCATGCCAAAGAGCTCGAGGTTAAAGAATAAACTGAGATGTGTAGGAGAAACAATGATAAAAAAAACATTTGTTCAAAATGTAATACGGAACAATAGTCTACTGAATATTCTACTTGATGATGGATCTTCGTGTTTGATTCTTCCTCGAAGAACATTTGATAAACCATTATGCTCTGGTTTACATCGTAAATTACAAATGAAGGTAAAACCAAGAAAAGCACTTGATTTATGCCATGGTGAAGATAAAATGGAAGAAATTTCTATTTCCGATTTTTCTATTGGAAGCAGGAGAACCTGGGATAGTTGTTCCAAGGGCTTTTGTCAAGCTGAAGAAAATTCAGAATATGTATACCATAGAAAAAATCTTTCAACAAATAAAATTAGTTGCTTAGGATCTTCTGGTTCTCACAATTTGTATTCAGAGACGCAGAATATGGAGGGTCAAAATAATGAACATCGAACTGATGGAGTTTTAGATCAGGGACTATTATCGTGTGTCACTTGTGGGATATTAAGCTATTCTTGTGTGGCCGTTATACAACCAAGTGAAGCAGCGGCTGAATGCCTTATTTCTTGTGACTACAACTCTTATGCTGATCATATTACTGGCTTCGAAGAAAACTGTGGCTTGAATGATGAAGCTGCTATGAATATACACAATTCTGATGTTGACATTAATCCTGGACAAATAGAGAAGATTAATTCTTCAGTCCAAGTTCCTTTCAGTAATGATGGTTTACTTTCTAATGCCAAGGTTGAGAGAGAAACTTCAGCTCTTGACCTTTTGGCGTCTGCATATGGTGACTTGTCAGATTCTGAAGAAACCCCTGGGATATGTAGCACCCTTTATAAATTTATTCATTGTAGTAAAAAGGTTGCTAATAGCTCTCTTGTTAGCAAGCTTTGTCAGTTACATGGAAATGACGGTTATGAGTGTTCATGTGAAGATAAAATGACACAACTCTCTGGGAATCAGCAAGACACTATAGGAAAACCAACTAGATTAGTGGATCATACCAAGATGACAACACATTCATTCAATGCTTCGATAAATAGCTTTCATCAAACTGTTCCAACAAAAGTAAATTTAAATGATATGATGACAAAAAATATCAAGTCTGATTCGAGTGTATTTGATCAACCTGGTTCTTCTTATGGTTCTAAAATGGCAACTGGAAATACATTTACAACTTTTGGTCATCTGGATGACTCCATAAACAACTCAAAAATGACTGTCGTGCAGCCATCAGACAAAGACTCTTACAGAATGCATGTCTTCTGTCTTGAACATGCTGTGGACGTAGAAAAGAGGCTTCGAGCATTAGGTGGGGTAAATTTGATGCTTCTTTGCCATCCAGAATATCCAAAAATTGAATCTGAAGCAAAACTCTTGGCTGAAGAGTTGGGGCTCCATTATCAATGGAAAGATGTCAAGTACAAGGATGCCTCCCAGCAAGACCAAGAGAAAATTAGAATAGCTATAGAAGATAAGGATGTTATTCCATGTAATGGGGATTGGGCCGTGAAACTAGGCATTAATCTCTATTACAGCGTCAGCCTCAGCCAATCTCCATTGTTCAGAAAACAGCTGCCATATAATGAGGTGATATACAAGTCATTTTCCCAAAAATCACCAACAGAATTAAACAGCTCTGGAACGATAGCTCGAAGGCAGAAAAAAATAATCTTTGCTGGAAGGTGGTGTGGAAAGGTGTGGATGTCAAACCAAGTGCATCCATATTTAGCTGAACAGAACTTGCCCGATGATGATGACAACATATATCTGAATATAGTTGCATGTGAAGCAAATACAGACATAGATGATCATAAACAAGCAATTCTACCTAGACGGAACTCAAAAAATGGCAATTCTCTAAGCAGAAGGAAATTTGATAAAATGAAGAAAGCAACTGTCAGATCAAGTACCAGGAAGCCTGTGCATACCGGACTCAACTCCAGTGATGATTTATCTGGGGATGACAATTCTGGAAATGCAGATGGTGACCAAGATTCAGATAGAAGAAAAGCTCATCAGAAGGGGAAAAAATCGGCTGTCATATCAAACACTCTGAAACATGCACACACTATTCCTGACAATTGCCGCAATCATAGATGTGCAAAGGAGAATTCTCAATATTCTAAAAATTCAGATGGTGACCAAGATACAGATAGAAGGAGATCTGATAAGAAGAGGAAGAGTATAGCTGTCAGATCAAACACTAGAAAACCAGTACGTACCCAGCTTGTAGACTCCGGTGATGCTGGGTGTGCAGAGAGTATTGGAAATACTGATGATGAACAAGACAGAAATCTGAGTTCTGAAGCTGACACTGATTCAGAGAACAAAAAGAAAGCAAGTCTACTCAGAAGGAACTTGCCAAATAATAATGCTGCTGCTATGAAGAAATCTGGCAGGAAGAGGAAAAGATCGAAGGCTAGTTGCATTAGGAAAGCTGCACATACTAGGCCTGACAGCTCTGCAGCATTTGGTTATGCAGAGGATGATATCTCCATCAAATGTGGCAGGAGTCTTAAGTGTCTTAGATCACATTCAAAAGGAACCAGCGGAGAACCGCCTAGCTTGCAGCCTTGCAAGGGGCGGTTCAATTATTGTGAGGCAACTGTGGTAGTTGCGCCTGAGAAGCAAAACAACAAAAGGAAGATTAAGAAGGCCCATAATTCTGTTGTTTGTGACAAAGAAAATTTCTCATGTGATGTTGAGGGCTGCAGCATGAGTTTCAGGACAAAGCATGACCTGACTTTGCACAAGCGGAATGTCTGCCCAGAGAAAGGCTGTGGGAAGAAGTTCTTCTCACACAAGTATTTGTTGCAGCATCGAAAGGTGCATTCCGATGACCGGCCCCTAAAGTGCCCATGGAAAGGCTGCAAGATGACATTTAAATGGGCATGGGCTCGTACAGAGCACATAAGAGTGCACACTGGTGAACGGCCGTACTCATGCAGGGAGCCTGGATGTGAGTTGACATTTCGCTTCGTCTCAGACTTCAGCCGGCATAGGAGAAAGACAGGCCACTAA
Protein Sequence:
- >PEQU_28844|Phalaenopsis_equestris|C2H2|PEQU_28844
MALDPVFSEVLPWLKTLPLAPEYHPTLVEFQDPIAYILKIEQEASRYGICKIVPPVPAVPKAIAVTNLNLSFSARSPSGDPTFTTRQQQIGFCPRRPRPVQKSVWQEAKARSFERAHLRKCRKKNKSSSSLSPIEVESLFWKTAADKPSSVEYANDIPGSGFSKLREEEIDMTAAENVGETAWNMRGVARAKGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNFLHMGAGKTWYGVPRDAALAFEEVVRVHGYGGEVNPLITFATLAEKTTLMSPEVLIGSGIPCCRLVQNAGEFVVTFPGSYHSGFSHGFNCGEASNIATPEWLKVAKEAAIRRASTNCPPMVSHYQLLYALALSLHTRNPSRILSMPKSSRLKNKLRCVGETMIKKTFVQNVIRNNSLLNILLDDGSSCLILPRRTFDKPLCSGLHRKLQMKVKPRKALDLCHGEDKMEEISISDFSIGSRRTWDSCSKGFCQAEENSEYVYHRKNLSTNKISCLGSSGSHNLYSETQNMEGQNNEHRTDGVLDQGLLSCVTCGILSYSCVAVIQPSEAAAECLISCDYNSYADHITGFEENCGLNDEAAMNIHNSDVDINPGQIEKINSSVQVPFSNDGLLSNAKVERETSALDLLASAYGDLSDSEETPGICSTLYKFIHCSKKVANSSLVSKLCQLHGNDGYECSCEDKMTQLSGNQQDTIGKPTRLVDHTKMTTHSFNASINSFHQTVPTKVNLNDMMTKNIKSDSSVFDQPGSSYGSKMATGNTFTTFGHLDDSINNSKMTVVQPSDKDSYRMHVFCLEHAVDVEKRLRALGGVNLMLLCHPEYPKIESEAKLLAEELGLHYQWKDVKYKDASQQDQEKIRIAIEDKDVIPCNGDWAVKLGINLYYSVSLSQSPLFRKQLPYNEVIYKSFSQKSPTELNSSGTIARRQKKIIFAGRWCGKVWMSNQVHPYLAEQNLPDDDDNIYLNIVACEANTDIDDHKQAILPRRNSKNGNSLSRRKFDKMKKATVRSSTRKPVHTGLNSSDDLSGDDNSGNADGDQDSDRRKAHQKGKKSAVISNTLKHAHTIPDNCRNHRCAKENSQYSKNSDGDQDTDRRRSDKKRKSIAVRSNTRKPVRTQLVDSGDAGCAESIGNTDDEQDRNLSSEADTDSENKKKASLLRRNLPNNNAAAMKKSGRKRKRSKASCIRKAAHTRPDSSAAFGYAEDDISIKCGRSLKCLRSHSKGTSGEPPSLQPCKGRFNYCEATVVVAPEKQNNKRKIKKAHNSVVCDKENFSCDVEGCSMSFRTKHDLTLHKRNVCPEKGCGKKFFSHKYLLQHRKVHSDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGERPYSCREPGCELTFRFVSDFSRHRRKTGH