Information report for PDK_30s762151g003
Gene Details
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Functional Annotation
- Refseq: XP_008799926.1 — lysine-specific demethylase REF6-like isoform X1
- TrEMBL: A0A2H3YKE0 — A0A2H3YKE0_PHODC; lysine-specific demethylase REF6-like isoform X1
- STRING: XP_008799926.1 — (Phoenix dactylifera)
- GO:0040010 — Biological Process — positive regulation of growth rate
- GO:0045815 — Biological Process — positive regulation of gene expression, epigenetic
- GO:0005634 — Cellular Component — nucleus
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
- GO:0071558 — Molecular Function — histone demethylase activity (H3-K27 specific)
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: Achn113981
- Musa acuminata: Ma06_g01490, Ma11_g08350, Ma10_g03830, GSMUA_Achr11P08770_001, GSMUA_Achr11P11060_001
- Oryza sativa: LOC_Os01g67970, JMJ705
Sequences
CDS Sequence:
- >PDK_30s762151g003|Phoenix_dactylifera|C2H2|PDK_30s762151g003
ATGCCCAGGGGCAGCAGAAGTGAACCACGGAGTTCTAGACTGAAAGATAAAATGAAAGGAGATGGAGAAGAGATGGTCAAGAACATATTTGTTCAGAATGTGATTCAAAATAATCACCTACTTAGTTTTCTTCTTGATAAAGGATCTTCCTGCATAGTACTTCCACAAAATGCACCCGACAGTCCTTTATGTTCAAATTCACTTGTCAGATTAAAGGCGAAACCAAGATTATCAGTTGGTTTATGCAGTCACGAGGAAGCAATGGAAGCATCAAGACTTTTGCCTTCTGATGATATTACGCCAGGCTGGAATGCAGGGATCAGAAACATGAGTGGTTTATGTTCACTTAAAGGAAATTCTGTATCTGTTTGGCAAGGAAAGATGATTTCATCAGCAACATGCAGCAAATTTGGTACTGCTGATTTCTACTCTTCTTCTTCAGACTCACAGAATGTGGAAGGTGAAAAAGAAGGTACGCTCCAAGGCGATGGGCTGCTAGATCAAGGACTATTGTCATGTGTTACATGTGGAATTTTGAGCTTTGCATGTGTGGCTGTCATTCAACCAAGAGAAGCAGCAGCGAAATACCTTATGTCCGCTGATTGTGGTATCCTTAGTGGTCATATTAATGGTTCTGGAGAAGTAAGTGGTATCAATAAAGACACAAGCAGGAAGATAGACGGTTCTAATCTGGTTTCAGGTTCAGGACAAATAGGAAGGCATACTGAAGATGCAGGGGATGATTACTGGGTTCACTGTAGCACATATTCAGGACAGGTTTCAGAACAGAGTTTTGAAGTCTTTTCTGATAATACAGGCCAGAGAGGCATCTCTGCGCTTGATCTTCTGGCTTCTGCCTATGGGGATACATCAGACACTGAGGAAGAAGTTTTGCATGAGAAATCTGCTTGTACTGATAAAAATGATACTAAAGGCTCCCCATCATCATGTAAACCAATTGAACATCCAAACTTTGGAGTTGAATTGCAAAAGTTATGTTCAAGTAAGGATTCACAGAAGGAGATAGATTTGTCCTTGGTTGGAGCAGACTGCCAAAATCGAACATTTGCTCAAAATTCTCATAATGACGGTGGCTCAGATGATCCAAGTAGTCTGACAAATGTTAGTGCTGGTGAGAAATGCCAGCTGAAATTGGAGTTCTGTGGTAGTAATGAGTCAGAAAATGCAAAGTCTGCTGGAACAGATAGTTTAGATGATAATAGGAAAATCACAACTTCTAATAGTTCTATAAAATCAATGGAGGAACCGATGGATTTTAGTTACAGGGAAGTGGAAGATGGTTGTCATGCTACTGAAACTGCTGACAACCATGAGAACAACATGAAAATGGGAAACCCATCTTTTGGTTCTGAAGATCACACGATTCAACCTGATTTCTGCTGTGACTTATCTGAATCAACAAAACGAACTGCTATAACAACACAATCAATAAATGTTGATACTGGAATGATGAATTCTGGCATACCAGCCATGCGAAGATGTGACAAAGATTCTTCTCGAATGCATGTTTTTTGTCTTGAACATGCTGTGGAGGTTGAAAAGCAAATTCAGCCAGCAGGCGGCATCGATATTATGCTCTTCTGTCATCCAGACTATCCTAAAATAGAAGCAGAAGCAAAACTCTTGGCAGAAGAATTGGGAATTCATTATACTTGGAAGGACGTGCATTTCAAAGAGGCCACAGAGGAAGAACAAGAGAGATTCCGAGCAGCCTTGGAAGATGAGGAAGCTATACCTGTAAACAGTGATTGGGCTGTGAAATTGGGCATTAACCTATATTACAGTGCCAGTCTTAGCAAGTCTCCCCTCTATAGCAAGCAGATGCCATACAATTCAGTCATATACAAGGCTTTTGGATGCAATTCCCCAGGCAACTCCCCCGTAAAGCCAAAGACTTCTGGGAGGAGAGCAGGCAGGCAGAAGAAAATAGTTGTTGCTGGTAGGTGGTGTGGGAAAGTTTGGATGTCAAATCAGGTCCATCCATATCTAGCTCATAGAAATGAAGCACAAGAGCATGATCATGTGGAACAACTCTACTCCCAAGGCATTGGTCAAAAGCCTAAAGTCAAGACACATACTAAGGATGCACCTTCTGAAAGAAATCCTCCAGCTAGCGATGGAACATCGGCAAGAAAATCTGGAAAGAAGAGAAAGAAGCCTCTGAGGAAGGCAAGCAAGAAGAAACCCAGACGTGCCCAAATAGATAAGTCAGAAGCTACAGACGATGTGCCCGAGACTTCCTCATCACCATATAAGTCAGAAGCTACAGACGATGTGGCCGAGACTTCCTCATCACCATGTGGAAGGGTTCTACGAAGCAGCCATTCAAAGCATGCTGAGATCGCTAACCGGAAAAAGTTTAATCGGAAAGATGAAGCTGAAGGAGGGCCAAGCACACGCCTCCGAAAACGGACATCAAAGGCCACTGAAGAGGTCAAGACTAAATCTGCAAGCAGGAAGCAGGTTAGACAGAGAAAAGCAAAGAAAGCACAGGTTACAAATCTTGTAACTAAGGATGAGGATGGGGAGTATGTATGTGATATTGAGGGGTGCTCAATGAGCTTTAGTACAAAACAAGATCTGTCTTTGCACAAGCGTGATATCTGCCCTGTCAAAGGGTGTGGGAAGAAGTTTTTCTCGCACAAGTATCTGGTGCAGCATAGGAAGGTGCACATGGATGATCGCCCGCTTGAGTGCCCGTGGAAGGGTTGCAAGATGACATTCAAGTGGGCATGGGCAAGAACGGAGCATATAAGGGTCCATACTGGTGACCGGCCCTATGTGTGCCGAGAACCAGGGTGCGGTCAGACATTCCGGTTTGTGTCAGATTTCAGCCGTCATAAGCGCAAGACAGGTCATTCGATAAAAAAGGGCAGGAGATGA
Protein Sequence:
- >PDK_30s762151g003|Phoenix_dactylifera|C2H2|PDK_30s762151g003
MPRGSRSEPRSSRLKDKMKGDGEEMVKNIFVQNVIQNNHLLSFLLDKGSSCIVLPQNAPDSPLCSNSLVRLKAKPRLSVGLCSHEEAMEASRLLPSDDITPGWNAGIRNMSGLCSLKGNSVSVWQGKMISSATCSKFGTADFYSSSSDSQNVEGEKEGTLQGDGLLDQGLLSCVTCGILSFACVAVIQPREAAAKYLMSADCGILSGHINGSGEVSGINKDTSRKIDGSNLVSGSGQIGRHTEDAGDDYWVHCSTYSGQVSEQSFEVFSDNTGQRGISALDLLASAYGDTSDTEEEVLHEKSACTDKNDTKGSPSSCKPIEHPNFGVELQKLCSSKDSQKEIDLSLVGADCQNRTFAQNSHNDGGSDDPSSLTNVSAGEKCQLKLEFCGSNESENAKSAGTDSLDDNRKITTSNSSIKSMEEPMDFSYREVEDGCHATETADNHENNMKMGNPSFGSEDHTIQPDFCCDLSESTKRTAITTQSINVDTGMMNSGIPAMRRCDKDSSRMHVFCLEHAVEVEKQIQPAGGIDIMLFCHPDYPKIEAEAKLLAEELGIHYTWKDVHFKEATEEEQERFRAALEDEEAIPVNSDWAVKLGINLYYSASLSKSPLYSKQMPYNSVIYKAFGCNSPGNSPVKPKTSGRRAGRQKKIVVAGRWCGKVWMSNQVHPYLAHRNEAQEHDHVEQLYSQGIGQKPKVKTHTKDAPSERNPPASDGTSARKSGKKRKKPLRKASKKKPRRAQIDKSEATDDVPETSSSPYKSEATDDVAETSSSPCGRVLRSSHSKHAEIANRKKFNRKDEAEGGPSTRLRKRTSKATEEVKTKSASRKQVRQRKAKKAQVTNLVTKDEDGEYVCDIEGCSMSFSTKQDLSLHKRDICPVKGCGKKFFSHKYLVQHRKVHMDDRPLECPWKGCKMTFKWAWARTEHIRVHTGDRPYVCREPGCGQTFRFVSDFSRHKRKTGHSIKKGRR