Information report for Pavir.9NG745400.2.p
Gene Details
|
|
Functional Annotation
- Refseq: XP_025793314.1 — lysine-specific demethylase SE14
- Swissprot: Q10RP4 — SE14_ORYSJ; Lysine-specific demethylase SE14
- TrEMBL: A0A3L6SH78 — A0A3L6SH78_PANMI; Lysine-specific demethylase SE14-like
- STRING: Pavir.Ia04207.1.p — (Panicum virgatum)
- GO:0045814 — Biological Process — negative regulation of gene expression, epigenetic
- GO:0048579 — Biological Process — negative regulation of long-day photoperiodism, flowering
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0032452 — Molecular Function — histone demethylase activity
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Saccharum spontaneum: Sspon.01G0002960-2B
- Setaria italica: Seita.9G538300.1.p, SETIT_033886mg
- Setaria viridis: Sevir.9G542600.1.p, SEVIR_9G542600v2
- Zea mays: AC149475.2_FGP005
Sequences
CDS Sequence:
- >Pavir.9NG745400.2.p|Panicum_virgatum|C2H2|Pavir.9NG745400.2.p
ATGGTTGTAGTCTGTATGTTATGGTTATGTTCTAGCATGTGCCATAATTTCTGTTTGTTAATCCACGCAGCATCGCTGGCAGTGCTCGGGGAGAAAACAACATTGATGTCCCCAAATGTTCTTGTAGCCCGTGGTGTGCCGTGCTGTAGATTAGTACAGTATCCTGGAGAGTTTGTTGTGACGTTCCCCAGGGCCTACCACATTGGATTTAGCCATGGATTTAATTGTGGAGAGGCTGCCAACTTTGCAACTCCCCAATGGTTAAAATTTGCAAAAGAGGCTGCTGTTCGAAGGGCTGTAATGAATTATCTCCCAATGCTCTCTCATCAACAGCTCCTGTACTTGTTAGCAGCATCTTTCATAATCAAAACGCCGAACGTGTTGTCTGGAATTCGAACTTCTCGGTTGAGAGATCGAAGAAAAGAAGAAAGAGAACTGCTGGTCAAACAGGAATTCTTGCAGGACATGGTTAATGAAAACAACCTTTTGTGTTCTTTCTTGAAAAAGAAATCAATCGATAATGTTGTGCTCTGGGAGCCTGACTTGTTACCATCTTCCACTATTCTAAATTCCTGCTCTTTTGGCTCAAAAGCTCCTGAGAAGAAGTCAGAGGATGGTTGCAGAATTGAATCTAGCCAATGCAACCACAAAGATAATAGCTCATCTGATGGCAGTGCGCTTATGACTGGGACACAGACTAAATGCATGTCTGCGAGTAACAAATCATCTGATGCTGCATCTGCTTCTGTGGAAAAGTCCGATGCTGACACAGATGACGAGGATGACCTGCCTTTCGATTTGAGCATTGATTCTGGCTCATTAACATGTGTTGCTTGTGGAATTCTTGGCTATCCATTCATGGCAATTTTGCAACCTTCCAGAGAAGCATTGGAAGGGATTTCCCCTGTTCATATGGAAAGATACAAGCTGAGTTCTGAAAAAGAGAAATCTGCAAATGTACTTCCATGCTGTCCTGCTGATAGCAATTTCGGATCGTCTTTTGTCCCAGATAGACCTTCCTGCTCTGTGGATCAACCATGTCTGGCTACTCCTGCGGAGCAAGCTAAGATTGCCCATCAGAATGTAAAGTCATATAAAGATGTTTGTTTACCGGAGAATGAACTTGCTGGACCTGTGCAACAACACAGTGATAGTTCATATTATTGCAGAAGTGAAAATACTCTTCATTCATGCAGTAACAGGGAAAAATCTGATAATAATATACCTATGGACAGTCTTGGCCCAAAACTTCAACAAACAGGCAGATGTGACATTAACGTACAGGCTGTAGAAAGTTGTGATGGCACTATTAACTGGAATACAAGTTCTACCTTTGCACGGCCCAGAATCTTTTGCTTGCAGCATGCCCTTGAGATTGAAGAGTTGTTTGAGGGTAAAGGTGGTGTCCATGCCCTCATTATTTGCCATTCAGATTATACTAAATTAAAAGCACTTGCAATATCAATAGCTGAAGAAATTGAGTTTCAGTTTGACTGTACAGACGTTCCTCTTGCAAATGCATCCAAGTCTGATTTACATCTAATCAACATTTCAATTGATGATGAGGGGCATGAGGAGGATGGAAGAGACTGGACATCGCAGATGGGTCTAAACCTGAAATATTGTGCCAAGCTTAGGAAAGAAACATCAGGGATTCAGGATCAAGCTCCTTTGTCAGTTTGGGGACTGTTTTCCAACCCTTCGCCTGTTTCGGTTGTCCCTAACCTCAAGTGGCTTTGCAGAAAAGCGCGGACGCCATACAGAGTTATTGGTATTATTTCCAGCTCTAGCACCACAACAATTGCCGGGGAGGTTAAGCCTGAAATGAATAAAGAAATAGGCACTACTGGAAATGTTTGTGAGGATGACAATAGCCAACATATTTTCCAACAAAATGGCCTCTTGCAACCAAGTAGGCTGCACGATTCTGATGATAGAGACAATAGGCCCTCATGTTCTAAAGAGAATGACCATGACATACATTGTCTTATTGATATCCCTATTGCTGTTGCCGAATATCCTTTGAAGCACCAAGTTTGTGAGGGTCCAGTTAGTGTTAGCACACGCAATGACATTATTTGTTCATCAGATTCCCAGGATTCATCTCCACTTGCCACATCACCAGTTGATGTTATAAGATTTCAAGGATGTACACAATCAACTGAGTTGAGTAGTTCATCAACCTTTTATGTTCAACAGTTCCTTAATGATGAAAGTACCTCTGTGGAAGGAAGCATGAACTGTATAAGCAATCATGAGTACTTAGAACTTCAGGATGTTACTTTGCAGTGCAGAGATGAATGTTTGCAAGTTCAACAAGATCAGGAGGTGATGGGACTTTGCAATAATCCTCATAGGACATCAGCTGATCCAGGTCTTAAGGAAGATTTGGCTATTTCAGAAGAAAAGCATGGGGACACTGTGTCAGCAGCCCTCGAAAATGACGAGGGTTATGCGAAGACATCTAACTGTTCTGATAAAACTAAGGAATCTGCAACGGTCAATCAATTGCAGAATCATGATGCTGGTGCTGTTCCAGTGAAACAAAAGTCAAGCTTTAATGAGATAACCTGTAGTGCTGATGTACAATGTATTATAACCTTCGGCTGTGTTGGCTCTGCTGATGTTCCTGGTTCGACTCAGCCCCCGTCGGTTCTGCATGATTTGATGAGTGATGAGCTGCAGGTTGATAGCCACCATTGTGTTGTCAAGGCCATTGAGCCTGAGAGCAATAATTCTGCTAAGCATGGATCTCTGCAGATAGATAACCTTATTTTAGAGGACACTCAAGCTGCTTCAACAACTGGGATCCCTGTACATGATGGACAATCTCTCCACGCTGGATCAAATTCCTTTGATATTTTACTTGGAGCTCTGGCTGAAGAGTCCAAGGTAACAGATACTCCTGGGAAAGATGAGGTTGGGAAAGCTTCATTGACATTAATGACACTGGCTAGCAATGACCACTTCGCAGATGAAATTGCAGAAGGCAAAATTGTAGGGGTGGTGAAAACCAACACAACTTTCGGAGCAACAAAAGATAACCAACAAGTTGATCGGCCGCATGACTCTTGTTTATCAGATCTGGTGTCTAGAAGCATCGGAAACTCAAATAGAACTGATATCATTCGCTATGTCAGACGCAAGCGCAAGAGAAAGAAGGATTCTCAGTCAAATACTGATAGTTCACATTCACAAAATCTTGGGAGTTACGTCCGGTCCCCGTGTGAGAGCTTGAGGCCAAGGACTAAACCTGCAGTAGTTGAAACTGTGGAAGTTTCTGCTGGTAAAAAGGGCAAGAGGGCAAAAGTGGAATCATTTCAGTGTGATATTGATCTTTGTGACATGGCATTTGAGACTAGAGCTGAACTTAATGCCCACAAGCGCAATATTTGCACTGATGAGTCATGTGGCAAGCGTTTCAGTTCCCATAAGTACTTGAAGCGTCATCAGTGCGTCCACAGTGAGATTAGGCCTTTGAAGTGCCCCTGGGATGGTTGCGAAATGACTTTCAAGTGGCTGTGGGCTCAGACCGAACATGTCAGGGTGCACACAGGAGAGCGGCCATACAAGTGTTCTGCACCTAGCTGTGGGCAGACTTTTAGATATGTCTCGGATTACAGTCGCCACAGAAAGAAGTTTAATCATTATTGA
Protein Sequence:
- >Pavir.9NG745400.2.p|Panicum_virgatum|C2H2|Pavir.9NG745400.2.p
MVVVCMLWLCSSMCHNFCLLIHAASLAVLGEKTTLMSPNVLVARGVPCCRLVQYPGEFVVTFPRAYHIGFSHGFNCGEAANFATPQWLKFAKEAAVRRAVMNYLPMLSHQQLLYLLAASFIIKTPNVLSGIRTSRLRDRRKEERELLVKQEFLQDMVNENNLLCSFLKKKSIDNVVLWEPDLLPSSTILNSCSFGSKAPEKKSEDGCRIESSQCNHKDNSSSDGSALMTGTQTKCMSASNKSSDAASASVEKSDADTDDEDDLPFDLSIDSGSLTCVACGILGYPFMAILQPSREALEGISPVHMERYKLSSEKEKSANVLPCCPADSNFGSSFVPDRPSCSVDQPCLATPAEQAKIAHQNVKSYKDVCLPENELAGPVQQHSDSSYYCRSENTLHSCSNREKSDNNIPMDSLGPKLQQTGRCDINVQAVESCDGTINWNTSSTFARPRIFCLQHALEIEELFEGKGGVHALIICHSDYTKLKALAISIAEEIEFQFDCTDVPLANASKSDLHLINISIDDEGHEEDGRDWTSQMGLNLKYCAKLRKETSGIQDQAPLSVWGLFSNPSPVSVVPNLKWLCRKARTPYRVIGIISSSSTTTIAGEVKPEMNKEIGTTGNVCEDDNSQHIFQQNGLLQPSRLHDSDDRDNRPSCSKENDHDIHCLIDIPIAVAEYPLKHQVCEGPVSVSTRNDIICSSDSQDSSPLATSPVDVIRFQGCTQSTELSSSSTFYVQQFLNDESTSVEGSMNCISNHEYLELQDVTLQCRDECLQVQQDQEVMGLCNNPHRTSADPGLKEDLAISEEKHGDTVSAALENDEGYAKTSNCSDKTKESATVNQLQNHDAGAVPVKQKSSFNEITCSADVQCIITFGCVGSADVPGSTQPPSVLHDLMSDELQVDSHHCVVKAIEPESNNSAKHGSLQIDNLILEDTQAASTTGIPVHDGQSLHAGSNSFDILLGALAEESKVTDTPGKDEVGKASLTLMTLASNDHFADEIAEGKIVGVVKTNTTFGATKDNQQVDRPHDSCLSDLVSRSIGNSNRTDIIRYVRRKRKRKKDSQSNTDSSHSQNLGSYVRSPCESLRPRTKPAVVETVEVSAGKKGKRAKVESFQCDIDLCDMAFETRAELNAHKRNICTDESCGKRFSSHKYLKRHQCVHSEIRPLKCPWDGCEMTFKWLWAQTEHVRVHTGERPYKCSAPSCGQTFRYVSDYSRHRKKFNHY*