Information report for Pavir.7NG287500.1.p
Gene Details
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Functional Annotation
- Refseq: XP_025824078.1 — protein indeterminate-domain 5, chloroplastic-like
- Refseq: XP_025824079.1 — protein indeterminate-domain 5, chloroplastic-like
- Refseq: XP_025824080.1 — protein indeterminate-domain 5, chloroplastic-like
- Refseq: XP_025824082.1 — protein indeterminate-domain 5, chloroplastic-like
- Refseq: XP_025824083.1 — protein indeterminate-domain 5, chloroplastic-like
- TrEMBL: A0A3L6PX34 — A0A3L6PX34_PANMI; Uncharacterized protein
- STRING: Pavir.Gb01057.1.p — (Panicum virgatum)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Hordeum vulgare: MLOC_56120.1
- Setaria italica: Seita.7G201000.2.p, Seita.7G201000.1.p
- Setaria viridis: Sevir.7G212900.3.p, Sevir.7G212900.2.p, Sevir.7G212900.1.p
- Triticum aestivum: Traes_2BL_58A855C7B.2, Traes_2DL_540050272.2, Traes_2AL_7ABA7B7C8.1
- Zea mays: GRMZM2G129261_P03, GRMZM2G129261_P02, GRMZM2G129261_P01
Sequences
CDS Sequence:
- >Pavir.7NG287500.1.p|Panicum_virgatum|C2H2|Pavir.7NG287500.1.p
ATGGCATCGAATTCATCGGCGGCGGCGTTCTTCGGGATTAGGGATGGGGACCAGCAAGACCAGATTAAGCCGCTGCTATCACCGCAGCAGCAGCACCAGCTGGCAGCGGCGCTTCCCGGTGCTGCTTCGAGCGCTCCGGCGTCCGGCCAAGGCGCGCCGACGGCGCCGCCGCCCAAGAAGAAGAGAACTTTGCCAGACCCCGACGCCGAGGTGATCGCGCTGTCCCCCAAGACGCTGCTGGCGACGAACCGGTTCGTGTGCGAGGTGTGCAACAAGGGGTTCCAGCGGGAGCAGAACCTGCAGCTCCACCGGCGCGGGCACAACCTGCCGTGGAAGCTGAAGCAGAAGAACCCGCTGCAGGCGCAGCGGCGGCGCGTGTACCTGTGCCCGGAGCCGACGTGCGTCCACCACGACCCGTCCCGCGCCCTCGGCGACCTCACCGGCATCAAGAAGCACTTCTGCCGCAAGCACGGCGAGAAGAAGTGGAAGTGCGACAAGTGCTCCAAGCGCTACGCCGTGCAGTCCGACTGGAAGGCGCACTCCAAGATCTGCGGCACCCGCGAGTACCGCTGCGACTGCGGCACCCTCTTCTCCAGGAGGGACAGCTTCATCACCCACCGGGCGTTCTGCGACGCGCTCGCGCAGGAGAGCGCGCGGCTGCCGCCGACGAGCCTCAGCAGCCTCACCGGCCACCTCTACGGCGCCACCAACGCGGGCAACATGGCGCTCAGCCTCTCGCAGGTGGGCTCCCACCTCAACTCCACGCTCCAGGACGGCCACCACCACCCGTCCCCGGAGCTCCTGCGCCTCGGTGCCGCGGCCGGCGGCGGCGGCGGCAGCATCGCCGCGCGCCTCGACCACCTCCTGTCGCCCACCTCCGGCGCGTCCGCCTTCCGCCCGGCCCCGCAGGGATCGGCGGCCTTCTTCCTCAACGCGGCGGCTGCGGCGGGGCAGGACTTCGGCGACGACGCGGGCAATGGGCCCCACTCGTTCATGCAGGGCAAGCCGTTCCATGGACTCATGCAGCTCCCCGACCTCCAATGCAATGGCGCTGGGGGCCCCGGCGGCTCGGCGCCAGGCCTCTTCAACCTGGGCTTCTTTGCTAACAATGGCAACAGCTCGGGGTCTAGTCATGAGCATGCAAGCCAGGGACTCATGAACAATGACCAGTTCAGCGGCGGGGCAGGTGGTGGCGGCGGCGGCGGGGGTTCGGAGGCATCGGCGGCGGGGATTTTCGGCGGAAACTTTGTTGGTGGCGGAGACCATGTCCCAACGCCGGGGTTCTTCGGCGGTGATCAGGCCACCATGCTGCCGCAGATGTCGGCGACCGCTCTGCTCCAGAAGGCGGCGCAGATGGGCGCCACCTCGAACCCCAACGGCGCGGCATCCATGTTCCGAGGCTTCGTCGGCTCTTCCCCTCACGGGCGGCCGGCGACGCCGCACATGGAGCAAAGCGAGGCGAACCTAAACGACCTGATGATCTCGCTCGCTGGAGGCGGCGTCAGCGCCGCGGGGATGTTCGGCGGCGGCAACGGCGCGGGGATGTTTGATCCGAGGCAGCTGTGCGACATGGAGCACGAGGTGAAGTTCGGCCAGGGCGGCGGCGACATGACGCGGGACTTCCTCGGCGTGGGCGGAGGCGGCATCGTGCGCGGGATTTCAACGCCGAGAGGAGGAGACCACCAGAGCAGCAGCGACATGAGCTCACTGGAGGCCGAGATGAAGTCGGCCTCGTCCTTCAACGGGGGCAGGATGCCATGA
Protein Sequence:
- >Pavir.7NG287500.1.p|Panicum_virgatum|C2H2|Pavir.7NG287500.1.p
MASNSSAAAFFGIRDGDQQDQIKPLLSPQQQHQLAAALPGAASSAPASGQGAPTAPPPKKKRTLPDPDAEVIALSPKTLLATNRFVCEVCNKGFQREQNLQLHRRGHNLPWKLKQKNPLQAQRRRVYLCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARLPPTSLSSLTGHLYGATNAGNMALSLSQVGSHLNSTLQDGHHHPSPELLRLGAAAGGGGGSIAARLDHLLSPTSGASAFRPAPQGSAAFFLNAAAAAGQDFGDDAGNGPHSFMQGKPFHGLMQLPDLQCNGAGGPGGSAPGLFNLGFFANNGNSSGSSHEHASQGLMNNDQFSGGAGGGGGGGGSEASAAGIFGGNFVGGGDHVPTPGFFGGDQATMLPQMSATALLQKAAQMGATSNPNGAASMFRGFVGSSPHGRPATPHMEQSEANLNDLMISLAGGGVSAAGMFGGGNGAGMFDPRQLCDMEHEVKFGQGGGDMTRDFLGVGGGGIVRGISTPRGGDHQSSSDMSSLEAEMKSASSFNGGRMP*