Information report for Pahal.I00849.1
Gene Details
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Functional Annotation
- Refseq: XP_025798188.1 — protein indeterminate-domain 2-like isoform X1
- Swissprot: Q9LVQ7 — IDD1_ARATH; Zinc finger protein ENHYDROUS
- TrEMBL: A0A2S3ITA1 — A0A2S3ITA1_9POAL; Uncharacterized protein
- STRING: Pavir.Ib00651.1.p — (Panicum virgatum)
- GO:0009937 — Biological Process — regulation of gibberellic acid mediated signaling pathway
- GO:0010029 — Biological Process — regulation of seed germination
- GO:0010431 — Biological Process — seed maturation
- GO:0005634 — Cellular Component — nucleus
- GO:0044212 — Molecular Function — transcription regulatory region DNA binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Hordeum vulgare: MLOC_14363.1
- Oryza sativa: OsIDD1
- Panicum virgatum: Pavir.9KG638500.1.p, Pavir.9NG659200.1.p
- Setaria italica: Seita.9G504400.1.p
- Setaria viridis: Sevir.9G508700.1.p, Sevir.9G508700.2.p
- Triticum aestivum: Traes_4AS_501676A91.1
- Zea mays: GRMZM2G171073_P02
Sequences
CDS Sequence:
- >Pahal.I00849.1|Panicum_hallii|C2H2|Pahal.I00849.1
ATGCTCGCGGCTGCTCGGTTCGTGGGCTCCGGTAGAGTGCGCTGCGATCCTCTCGGCCACGGACCTTTCTGCGGGAGCGAAGATTCCGGTATGGAGGTGGAGGCGACGCCCACGACGGCCGTGTCGGCTTCCGGCGGGGCCGCGCAGCTCCCGCCGCCCGGCCCGCCCGCCAAGAAGAAGCGTGCCCTCCCCGGCATGCCAGATCCTGACGCGGAGGTGATCGCTCTGTCGCCCAAGACGCTGATGGCGACGAACCGGTTCGTGTGCGAGATCTGCAACAAGGGGTTCCAGCGGGACCAGAACCTGCAGCTCCACCGCCGGGGCCACAACCTGCCGTGGAAGCTGCGGCAGCGGAGCGGCAAGGAGGCCCGGAAGCGGGTGTATGTCTGCCCGGAGCCCAGCTGCGTGCACCACGACCCCTCGCGCGCGCTCGGCGACCTCACCGGCATCAAGAAGCACTTCTGCCGCAAGCACGGCGAGAAGAAGTGGAAGTGCGACAAGTGCTCCAAGAAGTACGCCGTGCAGTCGGACTGGAAGGCGCACGTCAAGACCTGCGGCTCCCGGGAGTACCGCTGCGACTGCGGCACCCTCTTCTCCAGGAGGGACAGCTTCATCACCCACCGCGCCTTCTGCGACGCGCTCGCCGAGGAGAGCGCCAAGGCGCGCGCGGAGGTGCCTCCCGCCGAGGAGGACGGGGGCTCGGCGGCCGCCGTCGGTCCGCCACCGGCTGCGCCGCCAACTCAGGAGGCCGTACCTGCCTCGCCGGCGCCGCTGAGGCAGCAGCCGCCCCCGCCGCCGCCTGCGCCTGCGCCGCCTCACCGTGCGGAGCAACGTAATGAGCCGGAGACGAATGCGCCTGAGCCCACTCAGTTCGCGCCGCCGCTGCCCTCTCCGGCGGCGGCGGTGCCGGTGCTTTCGCATACTTCGGTCACAGCTACCAATGTCAGCGCCAGCAGCAGCAGCAGCAGCGTCGCGGGGACATCGCAGAGCCTGATGGGCGGCATGTTCGCACCGTCGTCGATGGCCCCATCGCCGCAGTTCCCGGACCTCGGTGGCGGGGTTGGCCGCCCGGAGCGCGCTTTGGCGGCCAAGCCCCCATCACTGTGCCTTGCCACGGACGCGTCGTCCTCAATCTTCTCGGCACCAGTGACCGCTGACCGGCAGCAGTTTGCGCCGCCGCCGCCGCCGTCCCCGTCGCCGCACATGTCCGCCACCGCGCTGCTCCAGAAGGCCGCGCAGATGGGCGCCACGTCGTCAACCTCCTCGTTCCTCCGCGGGCTGGGCCTCGACGCCTCCTCGTCATCGCCGGGGTCCTCGTCGTCCGGCCAGCAGCACCACCACGACGCCATGCAATTGTCGCTCCCGGAGACGTCGCTGCAGCAATGGCCCCCGCGGCTGGAGCAGGAGCCGGCGCCGATGCTCTCGGCCGGGCTCGGCCTCGGCCTGCCGTATGACTCCACCGGCGCTCCGGTGTGCCTGCCGGAGCTCATGATGGGCCAGTCGTCGCTGTTCGGCGGCAAGCCGGCTACCCTGGACTTCCTGGGGCTCGGGATGAGCCCGACTGGCGCGTCGGCAAGCAGAGGGCTCCCCGTGTTCATGCAGCCCATCGGCGGCGCCGTCGGGATGGCCGGGACCGGCGCCGGCGCCGCCGAGACGTTCGTCGGCGGCCGTGGCCCGCAGGCGACGCCGTGGGAGAGGAATCCGAGTACCTCGCCCATCCTGTAG
Protein Sequence:
- >Pahal.I00849.1|Panicum_hallii|C2H2|Pahal.I00849.1
MLAAARFVGSGRVRCDPLGHGPFCGSEDSGMEVEATPTTAVSASGGAAQLPPPGPPAKKKRALPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSGKEARKRVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHVKTCGSREYRCDCGTLFSRRDSFITHRAFCDALAEESAKARAEVPPAEEDGGSAAAVGPPPAAPPTQEAVPASPAPLRQQPPPPPPAPAPPHRAEQRNEPETNAPEPTQFAPPLPSPAAAVPVLSHTSVTATNVSASSSSSSVAGTSQSLMGGMFAPSSMAPSPQFPDLGGGVGRPERALAAKPPSLCLATDASSSIFSAPVTADRQQFAPPPPPSPSPHMSATALLQKAAQMGATSSTSSFLRGLGLDASSSSPGSSSSGQQHHHDAMQLSLPETSLQQWPPRLEQEPAPMLSAGLGLGLPYDSTGAPVCLPELMMGQSSLFGGKPATLDFLGLGMSPTGASASRGLPVFMQPIGGAVGMAGTGAGAAETFVGGRGPQATPWERNPSTSPIL*