Information report for Pahal.H00589.1
Gene Details
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Functional Annotation
- Refseq: XP_025791203.1 — uncharacterized protein LOC112872314
- TrEMBL: A0A2S3IF76 — A0A2S3IF76_9POAL; Uncharacterized protein
- STRING: Pavir.J27150.1.p — (Panicum virgatum)
- GO:0005515 — Molecular Function — protein binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Brassica napus: GSBRNA2T00029687001, GSBRNA2T00063056001
- Brassica oleracea: XP_013615265.1, XP_013630538.1
- Brassica rapa: XP_009149862.1, XP_009149858.1
- Panicum virgatum: Pavir.8NG275300.1.p, Pavir.8NG275300.2.p
- Salvia miltiorrhiza: SMil_00015437-RA_Salv
- Setaria italica: Seita.8G174800.1.p
- Setaria viridis: Sevir.8G184000.1.p
Sequences
CDS Sequence:
- >Pahal.H00589.1|Panicum_hallii|C2H2|Pahal.H00589.1
ATGGCCTACGCTGGCGCCGCCGCTGAGGCGGAGGCCGTCCGCGCGGAGGCCAAGGAGATTATGCTCGCCGACCACGACGGCGACATGGAGGCGTCGCTCGCCCGCGCCCGCGCCCTCGTGCACGCGCACCCGGGCTCGGTGGTCGCGTACCGCCTCCTGGGCGAGCTCCACTACGCCGCCGCCATGCGCGCGGCCCGCGGAGAGGGCAGCCCGGAGGACCGCAAGGCCGCGGCGGCGCCGCACCTCCGCGTCGCCCTGGAAGCGCTCACCGCGGCGCGCCGCCTCGCCCCGGACTGCGTCGACGTCGCCGCCACGCTCGGTGACGCGCTCGCGGCATCCCGGATGTACGCCGAGGCCGAGGCCGAGTTCCGCCGCGCGCAGAGCATCCCGAACCCCTCCGACCCGGCCCTCCACAACGCCGCCTACGGCATGTACGAGGGCTACGAGCACGAGCGCGACCCGGCCTTCGTGGCCGAGCGGGTGGAGGAGGCCAGGGAGCGGGCCCGCGCCTCCTACGCCCGCATGACCATCGAGGAGCTCGTCCCATCCGCGGTCCAGCGGGTGCTCGACGCAGGGAAACTGCTCGGCGCCGCGGAGGGGCGCAAGCGCGGCAAGCTCGTCGCCGAGTCCTTCCCCAACCTGGCGCGCGCGCAGTACCTCCAGGCGTACATGGACCTGGAGTTCGTGCGCAGCCTCGACCCCGCCATCGACAAGCGCCCGTTCCTGCGCCGGACCCTGGCCATCGCGGAGCGCCTGGCGCGGGCCTTCCCCAAGTCGCCCGTGATCGCCTGCTTCCGCGCGAAGCTCCTCTTCGTCCTGGGCGAGTACGACGCCGCCGAGCGGGAGTGCCGCCGCGCGCTCGACATGAAGGAGCCCGACGACCCGCAGCTGGACTGCATCCCGGCCGGGTCCATCAGCGGGGAGAACCTTGGCGCAAGGCTGGTCTCGCTGGCCTGCGAGTTCCACGAGCTGATCAACAAGATCGTGATGATGGCAGCCGATTACTGGGACTCCATGAGTGGCGAGAGGCGACACGACAGCTTCCTACGGGTGAGCTCCGATGTGCTGCAGGACGAGTACAGGAAGGTTGATCCGTCGTGCGCGTTCACCATGTCCGACGTGAGGAGCTTTGTCAAGGAACACAAGTCTTGGAAGTTCTGGATTTGCCCCATTTGTGATCGCAAGAAGTTTGTCGACTCTGGTTTGCTATTGTCACACATGTGCCGCAAGCACCCAAGGGCAGTCCTGCCACGGCTGCAGTCACTTTTGGATCAATCGCTCAATAGCGAAGCATCAGAGGAGGAGGATTTTCTGGATGGGGTAACTTTTTGTGAAGATTCAGCCGAGCAAGACATGATCTGCCTCAATAAGAGCAGTGTTGTATTCAAATGGTTGTTCTATGCACCTTCAAGTGGAGTAGGAGCAAAGCCACTTCCTGAAGTACGAGCAAAGAAGCGTGAGAAAGGATCTATGTTACTCGAGGGCATTAAGGAGAAAATGAAGACCCTGCCTACAGATAAATCTAGTACAGAGTTTGCAGAGGCTTTTCCGAGGATACAGGAGTTGTGGCTCAAATTTCTCAAAGCTTCTATGTTGGATTATCGAGGAGTCATTCTGGAACTTGCAAGATCATTCCTATGGGGAGAATTGAAGAAATGCATGACTCAAGATCCACAACTAGCTGATAAGTGGATCAGTGCTACTGATATTGATGCCGTATTCATTACAGAAGCTGAACCATCCCATGCAGAGGGGGATCCTGAAACAGGGGACGATAAACAGCCTTCCCAAGCAGATGGGGCTCTGATGGTCAGTGAGGATCATAAAGAAAGCAATGTTTGCATTCAACATGGTGAGAGTTCTGAGACCCCAGCAGACAATACAGAATCAACAGACCTGGCAACCAGTGTGGCTGAAAGCGGGAAGGACCTAGATGCAACATTGGATAAGGTTGATATTGATCCAAAGATCAGTGAGAATAATCAAGAAAGTGAGGTTCAGGTTGAAGGTGAGAGTTCTGAGGCCACGGTGACCAACATGTCAGATCCAGCAACCAGCATGCTGGAAAGCGGGAATGACCTTGACGTGAAGCTGGAGAACTTGCAGATCGATCCGAGTTCTGACAGCTCCATCGCGACTTCTGGTGCCGGCTCAAGTGGCCAAACTGGCCAACAGGACTGA
Protein Sequence:
- >Pahal.H00589.1|Panicum_hallii|C2H2|Pahal.H00589.1
MAYAGAAAEAEAVRAEAKEIMLADHDGDMEASLARARALVHAHPGSVVAYRLLGELHYAAAMRAARGEGSPEDRKAAAAPHLRVALEALTAARRLAPDCVDVAATLGDALAASRMYAEAEAEFRRAQSIPNPSDPALHNAAYGMYEGYEHERDPAFVAERVEEARERARASYARMTIEELVPSAVQRVLDAGKLLGAAEGRKRGKLVAESFPNLARAQYLQAYMDLEFVRSLDPAIDKRPFLRRTLAIAERLARAFPKSPVIACFRAKLLFVLGEYDAAERECRRALDMKEPDDPQLDCIPAGSISGENLGARLVSLACEFHELINKIVMMAADYWDSMSGERRHDSFLRVSSDVLQDEYRKVDPSCAFTMSDVRSFVKEHKSWKFWICPICDRKKFVDSGLLLSHMCRKHPRAVLPRLQSLLDQSLNSEASEEEDFLDGVTFCEDSAEQDMICLNKSSVVFKWLFYAPSSGVGAKPLPEVRAKKREKGSMLLEGIKEKMKTLPTDKSSTEFAEAFPRIQELWLKFLKASMLDYRGVILELARSFLWGELKKCMTQDPQLADKWISATDIDAVFITEAEPSHAEGDPETGDDKQPSQADGALMVSEDHKESNVCIQHGESSETPADNTESTDLATSVAESGKDLDATLDKVDIDPKISENNQESEVQVEGESSEATVTNMSDPATSMLESGNDLDVKLENLQIDPSSDSSIATSGAGSSGQTGQQD*