Information report for Pahal.B03026.1
Gene Details
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Functional Annotation
- Refseq: XP_025803598.1 — protein indeterminate-domain 16-like
- TrEMBL: A0A2S3H006 — A0A2S3H006_9POAL; Uncharacterized protein
- STRING: Pavir.Ba02057.1.p — (Panicum virgatum)
- GO:0009630 — Biological Process — gravitropism
- GO:0009965 — Biological Process — leaf morphogenesis
- GO:0010601 — Biological Process — positive regulation of auxin biosynthetic process
- GO:0048444 — Biological Process — floral organ morphogenesis
- GO:2000012 — Biological Process — regulation of auxin polar transport
- GO:2000904 — Biological Process — regulation of starch metabolic process
- GO:0005634 — Cellular Component — nucleus
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0043621 — Molecular Function — protein self-association
- GO:0044212 — Molecular Function — transcription regulatory region DNA binding
- GO:0046872 — Molecular Function — metal ion binding
- GO:0046982 — Molecular Function — protein heterodimerization activity
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Brachypodium distachyon: Bradi4g31770.2.p
- Hordeum vulgare: MLOC_57613.3, MLOC_57613.5
- Panicum virgatum: Pavir.2NG347000.2.p, Pavir.2NG347000.1.p, Pavir.J422000.1.p, Pavir.6NG243500.1.p
- Setaria italica: Seita.2G224800.1.p, Seita.6G177800.1.p
- Setaria viridis: Sevir.2G235100.1.p
- Triticum aestivum: Traes_5BL_13B5BB344.2
- Zea mays: GRMZM2G141031_P01, GRMZM2G110107_P02
Sequences
CDS Sequence:
- >Pahal.B03026.1|Panicum_hallii|C2H2|Pahal.B03026.1
ATGCTGGGCTTCTGCGCCCCCGCGGCCGGGTCGCCTCCGGACGACGCCACGCCGGAGCCGTTCCGCTCGCTGCAGATCGCCACCACGGCCGCCGCCGCCACGACGAAGAAGAAGCGCCGGCCCGCCGGCACACCAGACCCTGACGCGGAGGTGGTGTCGCTGTCGCCGCGGACGCTGCTGGAGTCGGACCGGTACGTGTGCGAGATCTGCGGGCAGGGGTTCCAGCGCGACCAGAACCTGCAGATGCACCGGCGGCGGCACAAGGTGCCGTGGAAGCTGCTGAAGCGGGAGGCCGGCGAGGCGGCGCGGAAGCGGGTGTTCGTGTGCCCGGAGCCGAGCTGCCTGCACCACAACCCCTCCCACGCGCTGGGCGACCTCGTCGGCATCAAGAAGCACTTCCGCCGGAAGCACAGCGGCCACCGCCAGTGGGCCTGCGCCCGCTGCTCCAAGGCCTACGCCGTCCACTCCGACTACAAGGCCCACCTCAAGACCTGCGGCACCCGCGGCCACTCCTGCGACTGCGGCCGCGTCTTCTCCCGGGTGGAGAGCTTCATAGAGCACCAGGACACCTGCACCGCCGGGCGGGCACGGGCGGACGCCTCGCCGGCGTGTGGTGGCGGCGGCGGCGGCCTGGCTACTGGTAGTGCCGGGTCGCAGCAGCAGGCGCCGCCGCCGGCCATGTCGCTGTCACGGACCGCGTCGAGCACCAGCCCGTCCAGCGACGTCGTCATCAGCCCGGTGGCCTGGCCCGGTCCGCCGATGCCGAGCCCTACGGCCGCCGCGTTCCACGGCCGCTTCGATCGGGTCCCGTCGCCGCGGACGCCGCCGTCGGAGCACCACCGCGGCGGGCACACGCACAACCTCGAGTTGCAGCTCATGCCGCCGTCCTGCAGCGTCGCGGGCGGTGGCGCGCCGGGAATGCCGGCGTTCTGCGGCCCGCAGAGCTCGCCTGCCGTCTCCTCGCGGGGCAACGCGGCCGCCGCCATGCATCTTCAGCTGTCCATCGGCGTCTGCGGCGGCGGGTCCGGGGACGCGGGCGGGCGCGGCGGCGAGGCGCTGGCCGCGGCGAGGGCGAAGCAGGAGGAGGAAGCGCGGGAGCAGCTGCGGCAGGCGGTGGCGGAGAAGGCAGCGGCGGATGAGGCCCGCGCGCAGGCGAGGCGGCACGCGGAGCTGGCCGAGCAGGAGCTGGCGAGCGCCAAGCGGATGCGGCGGCAGGCGCAGGTAGAGCTGAGCCGCGCGCACGCGCTCCGCGAGCACGCCGTGCGCCAGGTCAACGCGACGCTGCTCCAGATCACATGCCTCGGCTGCCGCCACAAGTTCCGCGCGCGGCCGGCGCCGCTGGCCGACGCGGCCCCCGATGTCGCCTGCAGCTACGTGTCCTCCGTCGTGACTGAGGGCGGCGACGCCGAGGTCGACGAGCCGCTGCCCCTGGACGCCGACGGCGCCAGCATGCGGCGGCGCCAGCACGCCATGGCCATGGACATCGTCCTCTAG
Protein Sequence:
- >Pahal.B03026.1|Panicum_hallii|C2H2|Pahal.B03026.1
MLGFCAPAAGSPPDDATPEPFRSLQIATTAAAATTKKKRRPAGTPDPDAEVVSLSPRTLLESDRYVCEICGQGFQRDQNLQMHRRRHKVPWKLLKREAGEAARKRVFVCPEPSCLHHNPSHALGDLVGIKKHFRRKHSGHRQWACARCSKAYAVHSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDTCTAGRARADASPACGGGGGGLATGSAGSQQQAPPPAMSLSRTASSTSPSSDVVISPVAWPGPPMPSPTAAAFHGRFDRVPSPRTPPSEHHRGGHTHNLELQLMPPSCSVAGGGAPGMPAFCGPQSSPAVSSRGNAAAAMHLQLSIGVCGGGSGDAGGRGGEALAAARAKQEEEAREQLRQAVAEKAAADEARAQARRHAELAEQELASAKRMRRQAQVELSRAHALREHAVRQVNATLLQITCLGCRHKFRARPAPLADAAPDVACSYVSSVVTEGGDAEVDEPLPLDADGASMRRRQHAMAMDIVL*