Information report for Pahal.B01902.1
Gene Details
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Functional Annotation
- Refseq: XP_025801398.1 — uncharacterized protein LOC112880881
- TrEMBL: A0A2T8KP01 — A0A2T8KP01_9POAL; Uncharacterized protein
- STRING: Pavir.Ba02617.1.p — (Panicum virgatum)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: CEY00_Acc17446
- Capsicum annuum: T459_31114
- Lactuca sativa: Lsa010343
- Musa acuminata: GSMUA_Achr11P26100_001
- Panicum virgatum: Pavir.2KG218200.1.p, Pavir.2NG262600.1.p, Pavir.2KG218200.3.p, Pavir.2KG218200.2.p
- Setaria italica: Seita.2G131900.1.p
- Setaria viridis: Sevir.2G137100.1.p
- Solanum lycopersicum: Solyc09g009120.2.1
- Solanum tuberosum: PGSC0003DMG400029413
Sequences
CDS Sequence:
- >Pahal.B01902.1|Panicum_hallii|C2H2|Pahal.B01902.1
ATGCGCGCCTCCGCTTCCGCGGCCCCCATGGAGGCCTCCGCCTCCGCCCGCAGATCCGCGCCGGGCCCCGACCCCGGCGCCAAGAAGCCGCGCCTCGGGCAGCCGCCGCCGCGGGACCCCAGATCTTCGTCCTACGCCACCGCCTCCAATGGCGCCGCCGCCAGCGCTGCCGAGCAGGCGCTGGTCGACGAGCTGCTCGGCCAGTACAGGACCGCGCTCGGTGAGCTAACCTTCAACTCCAAGCCCATCATCACCAACCTCACCATCATCGCCGGCGAGAACCTCCAGGCCGCCAAGCCCATCGCCGCCCTCATCTGCGCCAACATACTCGAGGTTCCAAGTGAACAGAAGCTACCATCTCTATATCTACTTGACAGTATTGTCAAGAATATTGGAAAAGATTATGTTAAACATTTCTCTGCAAGACTGCCAGAGGTTTTCTGCAAGGCGTATAAACAAGTTGATCCTTCTATACATCATAGCATGAGGCACCTTTTTGGAACATGGAAAGGAGTGTTTCCTCCACTTCCGCTCCAAACGATTGAGAAGGAACTTGGATTTCAGACATCTGCCAATGGATCGTCAAGTGCCGCACCATCAAGGCCTGATTCTCAGTCCCCGCGGCCATCCAATAGCATACATGTTAATCCAAAATATTTGGAAGCAAGACAGCAGCTCAACCAACCAACTAAGGGGATACTAGGAAGTGGTGCTAAGACAGCTGTAATTGCCGATGCAGGCGATGATGTTGAGAGGCCTAACAGGCTAGGTACTGACAGAAGTGCAGGGCGACGATTAGATGCTCCTAACGCTAGGCCTAACATTCAGCGCACTCAGAGGGACCCTTTTAGCAATCCAGTAAATGAAAAACAGGCAGGTAGAGATGTCAGGGGCCTTGGATTCTCTAACATTTCGCAGCAAGCTGTTGTTGGGACTGGTCAAGTTCGCTCAAAACCCAAAGGTCAAGATGGAATTGTAGGGCCGTATTATGCCACTGGTGTTGGCTCTTCTGAAGAACAATTTGACCGGCGCAGCAACTTTTATTCAAGCAAGGATGTTCGGCCGTCAGGATCTGTACGTTTGGATAGTGCACTTCTTCCAACTCCTTCCATTAATTCTGATAGAGTTGGTAGATCTTCATCAAACAAAAGTTGGAAGCACTCCGAGGAAGAAGAGTATGTGTGGGATGACGTACATTCTCAAGCAGCAGATTATAGCGGTAACAATACTGTAAGAAAAGGAGAATGGATGGCCGATGATGGCAATGCTAAGTTTGCAAGCCTCCAAAGGGCTAAATGGCCTGAGGTGGGAGCTGTTGAACATTTGGACCCAAATATACATAAACTAGATAGCTTACCAAGATTTGGACTTGCCACAGGTCAAGATAGAAGACTTGCAGCATACTTGGATCATGAAGAGTACATTCATGGTAAGCATGAGGTGGAACCAAGAATTGATAGGGAAATTATGCCTGATGGACAACAGTTCCCACCACCTCGAAGTTCCTCTCTCTGGGTGTCCCACGAAAAAACACACCCAGACATTGGGCTGGATCCTAGGATATCAAGGTTTTCCAATCAGCCAGGAGAGAGGTCTACTATTTATACTGGTACCATGTCAGCAAGTATCACTTCATCTGTACCTGTTGGGTTATCAGGACCCTATGCTGGAAGATCAAGCCTAGATAGTGCAAACAGTGTGCCAACACGATCAACTGAGACCTTTGGGCAGCAGAAGCACAGATATTGGTCATCTTCCCCTCCACCAGCTCACTCACCTTCATCTACTGCACCCTTTGCACGTCAGAGTTCTCCAAATCCTGCTGAGCCTGATTTTTATCCTTCCAGACCATTTTCTCAATTGGGCCAAAGTCCTCAAGAAGAATATAGCCAAAGAGCGGCAGCACTTGCTAAAGATTCTCATTTTATTGCTCAAAATGTTGGACTTACTCAGGGACAACCTAGTCTACAGGCAACTCAGCAGGCACAAAAATATCCTACCTTACAGTCAAAGCTACATAGCAAGCCAACTGATGAAGTGCAGGCAAGCTTTTCGCGTGAAAATTCTCCATCGCTGTTCAGACCTTCCATCCAGCTTGGAGAAGTCTCTTTGCCCACTGATTTGACCCCTATAAGCTCAGATTTGACAAGTGCTAGTAATTTGTTGGCTGGTCTCATTAAGAGTGGGTTCAAACCAAATAACCCCAGCGATTTTGCAAGTTTGGGGGCACAGCCTCTTGTTCCAAGTGGGCCACTTCCACATACTCTGCCATCTCCACCAGTGGCTTCTTCATCACTGCAAAATGCAGCTGGTGAAAATACCACTCTGCAAACTCAGACAACAAACACTGCTCGTCCACCTTTGCCACCAGGTCTGCCACCACCTGCATCAACACAGAGTGCGGAGAAAGCTGCACCTCTCTCAAGTCTGCTCAGTTCCCTGGTTGCAAAGGGATTAATCTCTACGCCAGCCACTGAATCATCCACCGCTGTCCCTTCACAGCCAAATAAATCAAGTGTGAACGCTACAAATGTCACAGCTGCAGCTATGCCTTTGCCAGCTCAGATGCCTTCAGTTGGTAAGGAGGCATCTAATTCGGCTTCATCTACCCCAACAAATGTTTTGTTACCCAAAGGTGTCGAAATCAAGACAGGTGACCTTATTGGCCTGGAGTTCAAGCCAGAGAAACTTCGTAAGTACAATGAACATGTGATTAGCAGCCTCTTTGGTGACCGAAACTATCAGTGTAAACTCTGTGGTGAAAGGTTCAGTCTTGAAGACGAATTGAGGTCACACACGACATGCCGTGGGTCAAGGGAGTCTGAGACTATCTATGCTGGTATGGCACCTAAAAAATGGTACCCTAGCAAGAACAGTTACATTGATGGATCACATGAAATGGAGGACAGCGCTGAGGCATTTGATGTGGATTTAAGTTCTGGAGAAGAAGTGTGCGAGTTTATGGTCCCTGCAGATGAGAGCCAAATCATCTGTGCACTATGTGGGGAGCCATTTGATGACTTCTATTCTATTGAGAAGGGGGACTGGATGTACAAGGACACGGTGTTTCTGGATTCCCCCAATGGAGAAGGCAGCTGCGGAAGCAATGTTGAGAGCAAAGAGCAGGTGCCCATAGTTCATGTAAGATGTATGCCAAGGGGCTCAAATGACGGCATGGAGGTGGACTAG
Protein Sequence:
- >Pahal.B01902.1|Panicum_hallii|C2H2|Pahal.B01902.1
MRASASAAPMEASASARRSAPGPDPGAKKPRLGQPPPRDPRSSSYATASNGAAASAAEQALVDELLGQYRTALGELTFNSKPIITNLTIIAGENLQAAKPIAALICANILEVPSEQKLPSLYLLDSIVKNIGKDYVKHFSARLPEVFCKAYKQVDPSIHHSMRHLFGTWKGVFPPLPLQTIEKELGFQTSANGSSSAAPSRPDSQSPRPSNSIHVNPKYLEARQQLNQPTKGILGSGAKTAVIADAGDDVERPNRLGTDRSAGRRLDAPNARPNIQRTQRDPFSNPVNEKQAGRDVRGLGFSNISQQAVVGTGQVRSKPKGQDGIVGPYYATGVGSSEEQFDRRSNFYSSKDVRPSGSVRLDSALLPTPSINSDRVGRSSSNKSWKHSEEEEYVWDDVHSQAADYSGNNTVRKGEWMADDGNAKFASLQRAKWPEVGAVEHLDPNIHKLDSLPRFGLATGQDRRLAAYLDHEEYIHGKHEVEPRIDREIMPDGQQFPPPRSSSLWVSHEKTHPDIGLDPRISRFSNQPGERSTIYTGTMSASITSSVPVGLSGPYAGRSSLDSANSVPTRSTETFGQQKHRYWSSSPPPAHSPSSTAPFARQSSPNPAEPDFYPSRPFSQLGQSPQEEYSQRAAALAKDSHFIAQNVGLTQGQPSLQATQQAQKYPTLQSKLHSKPTDEVQASFSRENSPSLFRPSIQLGEVSLPTDLTPISSDLTSASNLLAGLIKSGFKPNNPSDFASLGAQPLVPSGPLPHTLPSPPVASSSLQNAAGENTTLQTQTTNTARPPLPPGLPPPASTQSAEKAAPLSSLLSSLVAKGLISTPATESSTAVPSQPNKSSVNATNVTAAAMPLPAQMPSVGKEASNSASSTPTNVLLPKGVEIKTGDLIGLEFKPEKLRKYNEHVISSLFGDRNYQCKLCGERFSLEDELRSHTTCRGSRESETIYAGMAPKKWYPSKNSYIDGSHEMEDSAEAFDVDLSSGEEVCEFMVPADESQIICALCGEPFDDFYSIEKGDWMYKDTVFLDSPNGEGSCGSNVESKEQVPIVHVRCMPRGSNDGMEVD*