Information report for Pahal.A00033.1
Gene Details
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Functional Annotation
- Refseq: XP_025795590.1 — pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like
- TrEMBL: K3Z0X6 — K3Z0X6_SETIT; Uncharacterized protein
- STRING: Pavir.J03392.1.p — (Panicum virgatum)
- GO:0005730 — Cellular Component — nucleolus
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0005515 — Molecular Function — protein binding
- GO:0008097 — Molecular Function — 5S rRNA binding
- GO:0046872 — Molecular Function — metal ion binding
- GO:0080084 — Molecular Function — 5S rDNA binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Panicum virgatum: Pavir.1NG010700.1.p, Pavir.1KG020700.1.p
- Setaria italica: Seita.1G117800.1.p
- Setaria viridis: Sevir.1G116900.1.p
- Triticum aestivum: Traes_6DS_2B2F9C290.2, Traes_6AS_448C7608C.2, Traes_6BS_D373D1A96.2
- Zea mays: GRMZM2G380515_P02, GRMZM2G380515_P04
Sequences
CDS Sequence:
- >Pahal.A00033.1|Panicum_hallii|C2H2|Pahal.A00033.1
ATGAATAGAAGCATTTGCCACCACCTTCTCTCCCAGTGCAAAACGCTCAGAGAGCTCCAGAAACTCCACGCCCAGGCCGTGGCACAGGGTCTCCACCCACATCGCCAGTCCGTTTCCTGCAAAATCTTCCGCTGCTATGCTGACTTTGGCCGTGCAGCTGATGCTCGCAAGCTGTTTGATGAGATCCCCCGCCCGGACCTTGTCTCCTTTACCAGCCTCATGTCCCTCCACATCCAGTTAGAGCGCCACCGCGAGGCTGTATCCTTGTTCTCGCTTGCTGTTTCCGATGGTCACCGCCCTGACGGCTTTGCTGTTGTCGGTGCCCTGTCGGCCTCCGGTGGGGCTGGTGACCAGCAGGTTGGTAGGGCGGTGCACGGCCTGATATTCCGGCTTGGATTGGACTCTGAGGTGGTTGTTGGAAATGCGTTGGTTGATATGTATAGTCGGTGTGGGAAGTTTGAGTCCGCGGTACTCGTGTTTGATAGAATGTTTCTGAAAGATGAGATTACTTGGGGTAGCATGCTGCATGGTTACATTAAGTGTGCTGGATTGGATTTGGCATTATCGTTCTTTGATCAGATGCCTGTGAAGAGTGTAGTCGCTTGGACAGCACTGATCACTAGTCATGTACAAGGCAGGTTGCCTGTACGGGCCCTTGAGCTTTTTGCTAGGATGATACTGGAGAGCCATCGCCCTACTCATGTCACAATTGTAGGTGTACTCTCAGCTTGTGCTGACATTGGTGCTCTGGATCTAGGACGAATCATTCATGGATATGGAAGCAAATGTAATGCTAGCTCAAACATAATTGTTAGCAATGCTCTGATGGATATGTATGCAAAGAGTGGAAGCATTGAGATGGCACTTTCCGTATTCCAAGAAGTTCAATCAAAGGATGCTTTCACGTGGACTACTATGATCTCATGTTTCACTGTCCAGGGAGATGGGAGGAAAGCTCTTGAGCTCTTTTGGGACATGCTTAGGTCTGGGGTAGTTCCGAACAGTGTAACATTTGTTTCTGTTTTGTCTGCGTGCAGCCATGCTGGACTAATAGAAGAAGGTAGAGAGTTGTTTGGCACAATGCGTGAAACATACAGTATTGATCCCCAGATTGAGCACTATGGATGCATGATTGATCTGTTAGGACGGGGAGGGCTGCTAGAGGAAGCCGAAGCTCTAATAGTTGATATGAATGTGGAACCTGATATTGTTATATGGAGGTCACTTCTTAGTGCGTGCCTGGTTCATCACAATGATAGGTTGGCTGAGATTGCTGGAAAGGAAATTATGAAGAGAGAACCTGGGGATGATGGGGTTTATGTGCTTCTTTGGAACATGTATGCCTCATCAAATAAATGGAGAGAAGCTCGAGAGATAAGGCAGCAAATGTTGACTAGGAAGATCTTCAAAAAACCAGGGTGTAGTTGGATAGAAGTTGATGGTGTTGTCCATGAATTCTTGATGTGTTCTGGAGATGAGATCGATGGAGATGCAAGTGTTGGGCAGAAGGGTTTCAAGGATATAAGGCGCTACAAGTGTGAATTTTGCACTGTTGTCAGGTCAAAGAAATGCCTGATTCAAGCTCACATGGTTGCACATCATAAGGATGAACTGGACAAATCAGAAACTTACGACTCAAATGGGGAAAAGATTGTTTGTGAGGAAGAACATAGGTGCCTACAGTGCGGAGCTTGTTTCCAGAAACCAGCTCATCTAAAGCAGCACATGCAAAGTCACTCAAATGAGAGACTCTTCATTTGCCCACTCGAAGACTGCCCCTTCAGCTATAAAAGGAAAGATCACTTGAATAGACACATGCTTAAGCATCAGGGTAAGTTGTTTGGTTGCACTGTGGACGGTTGTGATAGGAGATTCAGTATCAAGGCAAATATGCAACGGCATGTTAAGGAATTTCATGAGGATGAAAATGTCACTAAGAGCAACCAGCAGTTTATCTGCAAGGAGGAGGGCTGTAACAAGGCTTTCAAGTATTTCTCAAAGTTGAAGAAACACGAGGAGTCACATGTTAAATTGAACTATATTGAGGTAGTGTGCTGTGAACCGGGCTGCATGAAGATGTTCACAAATGTTGACTGCCTGAGGGCTCATAACCAATCTTGCCATCAGCATGTTCAGTGTGAGATGTGTGGGGAAAAGCACCTGAAGAAGAACATCAAGCGCCACCTACAAGCCCATGACGAGGTGCCCTCCGGTGAAAGGATCAAATGCACCTTTGATGGTTGTGATCACTCCTTTTCCAATAAATCAAATCTGACTAAGCATATGAAGGCATGCCATGACCAACTGAAACCTTTCACATGCCGAGTTGCTGGGTGCGGCAAGGCGTTCACCTACAAGCACGTCAGGGACAACCATGAGAAATCCAGCGCACATGTATACGTTGAGGGAGACTTTGAGGAGATGGATGAGCAGCTGCGCTCGCGGCCGAGAGGTGGACGGAAGAGGAAAGCACTGACTGTGGAGACATTGACACGCAAGAGGGTGACCATTCTTGGCGAGGCATCGTCATTGGACGACGGGGAGGAGTATCTACGCTGGTTGCTATCGAGTGGTGATGATTCAGCTCAGTAG
Protein Sequence:
- >Pahal.A00033.1|Panicum_hallii|C2H2|Pahal.A00033.1
MNRSICHHLLSQCKTLRELQKLHAQAVAQGLHPHRQSVSCKIFRCYADFGRAADARKLFDEIPRPDLVSFTSLMSLHIQLERHREAVSLFSLAVSDGHRPDGFAVVGALSASGGAGDQQVGRAVHGLIFRLGLDSEVVVGNALVDMYSRCGKFESAVLVFDRMFLKDEITWGSMLHGYIKCAGLDLALSFFDQMPVKSVVAWTALITSHVQGRLPVRALELFARMILESHRPTHVTIVGVLSACADIGALDLGRIIHGYGSKCNASSNIIVSNALMDMYAKSGSIEMALSVFQEVQSKDAFTWTTMISCFTVQGDGRKALELFWDMLRSGVVPNSVTFVSVLSACSHAGLIEEGRELFGTMRETYSIDPQIEHYGCMIDLLGRGGLLEEAEALIVDMNVEPDIVIWRSLLSACLVHHNDRLAEIAGKEIMKREPGDDGVYVLLWNMYASSNKWREAREIRQQMLTRKIFKKPGCSWIEVDGVVHEFLMCSGDEIDGDASVGQKGFKDIRRYKCEFCTVVRSKKCLIQAHMVAHHKDELDKSETYDSNGEKIVCEEEHRCLQCGACFQKPAHLKQHMQSHSNERLFICPLEDCPFSYKRKDHLNRHMLKHQGKLFGCTVDGCDRRFSIKANMQRHVKEFHEDENVTKSNQQFICKEEGCNKAFKYFSKLKKHEESHVKLNYIEVVCCEPGCMKMFTNVDCLRAHNQSCHQHVQCEMCGEKHLKKNIKRHLQAHDEVPSGERIKCTFDGCDHSFSNKSNLTKHMKACHDQLKPFTCRVAGCGKAFTYKHVRDNHEKSSAHVYVEGDFEEMDEQLRSRPRGGRKRKALTVETLTRKRVTILGEASSLDDGEEYLRWLLSSGDDSAQ*