Information report for ORUFI02G28900.1
Gene Details
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Functional Annotation
- Refseq: XP_015626115.1 — protein indeterminate-domain 4, chloroplastic
- Refseq: XP_015626116.1 — protein indeterminate-domain 4, chloroplastic
- Refseq: XP_015626117.1 — protein indeterminate-domain 4, chloroplastic
- Refseq: XP_015626118.1 — protein indeterminate-domain 4, chloroplastic
- TrEMBL: A0A0E0NJ25 — A0A0E0NJ25_ORYRU; Uncharacterized protein
- STRING: ORUFI02G28900.1 — (Oryza rufipogon)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Hordeum vulgare: MLOC_60958.3, MLOC_60958.2, MLOC_60958.1
- Panicum virgatum: Pavir.1NG397700.2.p, Pavir.1NG397700.1.p
- Setaria italica: Seita.1G268600.2.p, Seita.1G268600.1.p
- Setaria viridis: Sevir.1G273200.4.p
- Triticum aestivum: Traes_6DL_244C908B5.2
Sequences
CDS Sequence:
- >ORUFI02G28900.1|Oryza_rufipogon|C2H2|ORUFI02G28900.1
ATGGCATCCAACTCATCAGCGGCAGCTGTGGCGGCGTTGTTTGGAATTAGGGATGGCGACCATGAGGACCAGATTAAGCCGCTATTTGCCCAGCAGCAGCAACACCACCACCACCAGCCACCTATGGCGCCATCCAACGCCGCGGCGGCGGCTTCTGCGGCTGGGTCGGCGGCCGGTCAAGCGGCCGTGGCGGCGCCACCAGCGAAGAAGAAGAGAACCTTACCAGACCCGGACGCGGAGGTGATAGCGCTGTCGCCGAAGACGCTGCTGGCGACGAACCGGTTCGTGTGCGAGGTGTGCAACAAGGGGTTCCAGCGGGAGCAGAACCTGCAGCTGCACCGGCGCGGGCACAACCTGCCGTGGAAGCTGAAGCAGAAGAACCCGCTGCAGGCGCAGCGCCGCCGGGTGTACCTGTGCCCGGAGCCGACGTGCGTCCACCACGACCCCTCCCGCGCCCTCGGCGACCTCACCGGCATCAAGAAGCACTTCTGCCGCAAGCACGGCGAGAAGAAGTGGAAGTGCGACAAGTGCTCCAAGCGCTACGCCGTCCAGTCCGACTGGAAGGCCCACTCCAAGATCTGCGGCACCCGCGAGTACCGCTGCGACTGCGGCACCCTCTTCTCCCGGAGGGACAGCTTCATCACCCACCGCGCCTTCTGCGACGCCCTCGCCCAGGAGAGCGCGCGGCTGCCACCCGCCGCCGCCGGCCACCTCTACGGCTCCGCCGGCGCCGCCAACATGGCGCTCAGCCTCTCCCAGGTCGGCTCCCACCTCGCCTCCACCCTCCAGGACCACGGCCACCACCACCACCATCACGGCGCCTCCCCGGACCTCCTCCGCTTCGGCGGCAGCGGCGGTGGCGCCATGGCGGCACGCCTCGAGCACCTCCTGTCGTCGTCCAGCGCCTCCGCGTTCCGGCCCCTGCCGCCGCCGCAGCAGCAGCCTCCGGCGCCGTTCCTCCTCGGCGCGGCGCCGCAGGGGTTCGGCGACGGCGGCGACGGCAGTGGTCCGCACGGATTCTTGCAGGGTAAGCCGTTCCATGGCCTCATGCAGCTCCCTGACCTCCAAGGGAATGGCACCGGCGGGCCGTCGCCGTCGGGTCCGGGTCTCTACAACCTCGGCTACATCGCCAACAGCGCGAACAGCTCGGGTACTTCCAGCCATGGCCACGCGAGCCAGGGACAGATGACGAACACCGACCAGTTCAGCGAAGGAGGGGGTGGTGGCGGCGGCGGCGGCGGTTCAGAGACATCGGCGGCGGCGCTGTTCGGCGCCGGTGGGAACTTCTCCGGCGGCGACCACCACCAGGTTTCTCCTGCCGGGATGTACGCGAATGATCAGGCCATGATGCTGCCGCAGATGTCGGCGACCGCGCTGCTCCAGAAGGCGGCGCAGATGGGCTCGAGCACGTCGAGCGCGAACGGCGCCGGCGCGTCCGTGTTCGGCGGCGGCTTCGCCGGCTCGTCGGCGCCGTCGTCCATCCCGCACGGCCGCGGGACGACCATGGTCGACCAGGGGCAGATGCACCTCCAGAGCCTGATGAACTCGCTCGCCGGCGGTGGCAACGCCGACCACCAGGGCATGTTTGGGAGTGGCAGCATTATTGACCCGAGGCTGTACGACATGGACCAGCACGAGGTGAAGTTCAGCCTGCAGCGCGGCGGCGGCGGCGGCGGCGACGGCGACGTGACGCGTGACTTCCTCGGCGTCGGCGGCGGCGGTTTCATGAGGGGGATGTCGATGGCGAGAGGGGAGCACCATGGCGGTGGCGGCAGCGACATGCATGGCACCTTGGAGGCCGAGATGAAGTCGGCGTCGTCGTCCTTCAACGGAGGCAGGATGCAATGA
Protein Sequence:
- >ORUFI02G28900.1|Oryza_rufipogon|C2H2|ORUFI02G28900.1
MASNSSAAAVAALFGIRDGDHEDQIKPLFAQQQQHHHHQPPMAPSNAAAAASAAGSAAGQAAVAAPPAKKKRTLPDPDAEVIALSPKTLLATNRFVCEVCNKGFQREQNLQLHRRGHNLPWKLKQKNPLQAQRRRVYLCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARLPPAAAGHLYGSAGAANMALSLSQVGSHLASTLQDHGHHHHHHGASPDLLRFGGSGGGAMAARLEHLLSSSSASAFRPLPPPQQQPPAPFLLGAAPQGFGDGGDGSGPHGFLQGKPFHGLMQLPDLQGNGTGGPSPSGPGLYNLGYIANSANSSGTSSHGHASQGQMTNTDQFSEGGGGGGGGGGSETSAAALFGAGGNFSGGDHHQVSPAGMYANDQAMMLPQMSATALLQKAAQMGSSTSSANGAGASVFGGGFAGSSAPSSIPHGRGTTMVDQGQMHLQSLMNSLAGGGNADHQGMFGSGSIIDPRLYDMDQHEVKFSLQRGGGGGGDGDVTRDFLGVGGGGFMRGMSMARGEHHGGGGSDMHGTLEAEMKSASSSFNGGRMQ