Information report for Oropetium_20150105_06388A
Gene Details
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Functional Annotation
- Refseq: XP_012698757.2 — extensin
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0009910 — Biological Process — negative regulation of flower development
- GO:0005634 — Cellular Component — nucleus
- GO:0003677 — Molecular Function — DNA binding
- GO:0042803 — Molecular Function — protein homodimerization activity
- GO:0046872 — Molecular Function — metal ion binding
- GO:0046982 — Molecular Function — protein heterodimerization activity
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Brachypodium distachyon: BRADI_4g38000v3
- Panicum virgatum: Pavir.J298600.1.p, Pavir.2KG419900.1.p
- Setaria italica: SETIT_030356mg, Seita.2G308500.1.p, Seita.2G308500.2.p
- Setaria viridis: SEVIR_2G319500v2, Sevir.2G319500.1.p, Sevir.2G319500.2.p
- Zea mays: GRMZM2G081812_P02, GRMZM2G081812_P03, GRMZM2G081812_P01, GRMZM2G081812
Sequences
CDS Sequence:
- >Oropetium_20150105_06388A|Oropetium_thomaeum|C2H2|Oropetium_20150105_06388A
ATGGGGAAGAAGAAGAAGCGCGTGGACAAGGTGTTCTGCTACTACTGCGACCGCGAGTTCGACGACGAGAAGATCCTCGTCCAGCACCAGAAGGCTAAGCACTTCAAGTGCCACGTCTGCCACAAGAAGCTCTCCACCGCCTCCGGCATGACCATCCACGTCCTCCAGGTCCACAAGGAGTCAGTCACCAAGGTTCCTAATGCAAAGGCTGGTAGGGAATCAACAGAGATTGAGATCTTTGGAATGCAAGGGATTCCTGCAGATGTGCTGGCTGCGCATTACGGAGAAGGTGCAGGAGCAGTTGCTTCCCCACCCTCTGTAGCAAATAATAAACAGTCTGGTACCCAACCAGCTACAAATGAGGTCTATCTGGTGTGGGATGATGAAGCAATGTCAATGGAGGAAAGAAGGTTATCATTGCCCAAATATCAGGTGCATGATGAAACCAGCCAGCGCTACGGCTCCAACGCTGACAACATACTGCCCGTCGCTGCTGTAACTGTAATGTACGCTGCCATGGACGGAAGCAATGCGTACTATGCCTGGCGTCTGTTCTGCATCTTCTTCTTCCTCGCCGCCGCCTTCGTGCAATGTGGGGCGAGAGTGCTGAGGCCCGATGACGACATGCTGCAGCTCGACCACTACGACTCCCCTTCCAGCCCCTACTACAGCACGCCCATCATGCCGCCCTACGGCGACGCCTTCGCACCACCCAATGACACTCCTCCGCCCCACGGTCACGACTCGCCCAACTGCGGCGGCCTCACTCCACCTCCACCTCCACCTCCGCCGCCGGCGTCCGTCATCCCGACGCCGGCGTTCAGCTACTCCTCTCCTCCTCCACCGCCGCCATACATCAGTCCAAACCCACCACCACCGGACATCAGTCCGAGCCCATCACCACCGACTGAGACACCACCCTTCCCGCCCGTCGTTTACCCGAGTCCACCTGAAGTCACGCCACCTAGCCCACCAGAGATCGCGCCACCACCGGAGGTCACGCCCAGCCCGCCGGAGATCGCGCCGATTCCGAGCCCGAGCCCGCCGGAAGTAGCACCTAGCCCACCAGAGGTCTCACCGAGTCCGCCGGAAAGCACGCCCTTTCCGCCGATTGTTTACCCGAGCCCGCCCGAAGTCACACCTAGCCCACCCGAGATTGCGCCAAATCCCAGCCCACCTGAGATTGCGCCGTACCCGAGCCCACCAGAAGTGTCGCCGAGTCCACCGGAAATAGCACCGTACCCGAGTCCACCGGAAGTAACTCCCAGCCCACCGGAAATAGCACCGTACCCGAGTCCACCGGAAGTAACTCCCAGCCCACCGGAAATCTCACCAAGCCCACCAGAAATCGTGCCGAGCCCGCCGAACTACGAACCCAGCCCGCCTAGCATTGTCCCGAGCCCCCCGGAATACGCGCCGGAGCCACCCAGCTACGTCCCCAGTCCACCGGTGTACGCACCGGCGCCGCCAGAGTACGAGCCGACCCCACCTGGTTACACGCCGGAGCCACCTGCGTACGAGCCGAGCCCGCCGGAGTACGCGCCGGAGCCACCTGCGTTCGTGCCCAGCCCGCCGATCTACGCGCCGTACCCGCCGGGCATCATTCCGAGCCCGCCGGAGAACGCGCCGCCTGGGATCGTCCCGAGCCCGCCGGAGTACGCGCCGGAGCCACCGGTGTACGCGCCGTACCCGCCAGGGATCGTCCCGGGCCCGCCGGAGAACGCGCCGGAGCCGCCCGGGGAAGTCCCTGGTGCTCCGGGAGGCTTCATGCCGCCAGTGGTGTTCCCGCCGCCCTTCGCGGGGGCGTCGCCGGGGACGCAGGGCGGGACGTGGTGCGTGGCGAAGAAGGCAGTGCCGGGGCAGATCATTCAGCAGGCCATGGACTACGCGTGCGGCTCCGGCGCGGACTGCGACTCCATCCAGCCGTCGGGACCCTGCTACCAGCCCGACACCATGGAGGCGCACGCCTCCTACGCCTTCAACAGCTACTGGCAGCGCACCAAGGCCAACGGCGCCAACTGCGACTTCGGCGGCACCGCCATGCTCGTCACCAAGGATCCAAGCTATGATGGCTGCCATTACATTTTTATGTGA
Protein Sequence:
- >Oropetium_20150105_06388A|Oropetium_thomaeum|C2H2|Oropetium_20150105_06388A
MGKKKKRVDKVFCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTASGMTIHVLQVHKESVTKVPNAKAGRESTEIEIFGMQGIPADVLAAHYGEGAGAVASPPSVANNKQSGTQPATNEVYLVWDDEAMSMEERRLSLPKYQVHDETSQRYGSNADNILPVAAVTVMYAAMDGSNAYYAWRLFCIFFFLAAAFVQCGARVLRPDDDMLQLDHYDSPSSPYYSTPIMPPYGDAFAPPNDTPPPHGHDSPNCGGLXXXXXXXXXXASVIPTPAFSYSSPPPPPPYISPNPPPPDISPSPSPPTETPPFPPVVYPSPPEVTPPSPPEIAPPPEVTPSPPEIAPIPSPSPPEVAPSPPEVSPSPPESTPFPPIVYPSPPEVTPSPPEIAPNPSPPEIAPYPSPPEVSPSPPEIAPYPSPPEVTPSPPEIAPYPSPPEVTPSPPEISPSPPEIVPSPPNYEPSPPSIVPSPPEYAPEPPSYVPSPPVYAPAPPEYEPTPPGYTPEPPAYEPSPPEYAPEPPAFVPSPPIYAPYPPGIIPSPPENAPPGIVPSPPEYAPEPPVYAPYPPGIVPGPPENAPEPPGEVPGAPGGFMPPVVFPPPFAGASPGTQGGTWCVAKKAVPGQIIQQAMDYACGSGADCDSIQPSGPCYQPDTMEAHASYAFNSYWQRTKANGANCDFGGTAMLVTKDPSYDGCHYIFM*