Information report for orange1.1g007898m
Gene Details
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Functional Annotation
- Refseq: XP_024036713.1 — protein indeterminate-domain 7
- Refseq: XP_024036715.1 — protein indeterminate-domain 7
- Refseq: XP_024036716.1 — protein indeterminate-domain 7
- Refseq: XP_024036717.1 — protein indeterminate-domain 7
- Swissprot: Q8H1F5 — IDD7_ARATH; Protein indeterminate-domain 7
- TrEMBL: V4UKA4 — V4UKA4_9ROSI; Uncharacterized protein
- STRING: XP_006426554.1 — (Citrus clementina)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Gossypium arboreum: Cotton_A_05439_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A05G1117, Gh_D05G1287
- Manihot esculenta: Manes.04G140300.1.p, Manes.11G025600.1.p
- Nicotiana tabacum: XP_016479410.1, XP_016479409.1
- Populus trichocarpa: Potri.003G040100.1, Potri.003G036900.5, Potri.003G036900.4, Potri.003G036900.2, Potri.003G036900.1, Potri.003G036900.3
- Ricinus communis: 28694.m000662
- Ziziphus jujuba: XP_015890704.1
Sequences
CDS Sequence:
- >orange1.1g007898m|Citrus_sinensis|C2H2|orange1.1g007898m
ATGATGAAAGGCTTGATATTTCATCAACAGCAACAACAGCAGCAGCAAGTTTTAGAAGAAAATATGTCAAATTTGACCTCTCAATCTGGTACCGAAGCAAGTGTTTCTTCAGGCAACATTAGGGGCGCTGAAACAACAAACCATCAACAATATTTTGCCACCCCACCAACTCAAGCTCAACCACCTGCAAAAAAGAAGAGAAACCTTCCGGGCAACCCAGACCCAGATGCAGAAGTGATAGCTTTGTCGCCAAAGACGCTGATGGCGACAAACAGATTTGTGTGTGAGATCTGCAACAAAGGGTTTCAAAGAGACCAGAATCTTCAGCTTCACAGAAGAGGGCACAATTTGCCATGGAAGCTAAAGCAAAGAACTAGCAAAGAGATAAGGAAGAAGGTATATGTGTGTCCAGAGCCAAACTGTGTGCACCATGACCCGTCAAGGGCACTTGGAGACTTAACTGGAATCAAGAAGCACTTCTGCAGAAAGCATGGTGAAAAGAAGTGGAAATGTGACAAGTGCTCAAAGAGGTATGCGGTTCAATCAGATTGGAAAGCTCATTCCAAGACCTGTGGCACCAGAGAGTACAGATGCGACTGTGGAACCCTTTTCTCAAGGAGAGATAGTTTCATCACGCACAGAGCTTTCTGTGATGCTTTGGCTGAAGAAAGTACAAGGGCTATTACAGGAACAAACCCAATTCTCAGCTCATCATCTCATCATCAACCTGGTATTGTTGCTGGGGCCTCTTCACATGTAAACTTACAAATCCCTCAATTCAATCCCCAAGACTTCAGTGCATTTTCACTTAAAAAAGAACAACAAAGTTATAGCTTAAGACAAGAAATGCCACCATGGCTTGGTAGCCAACAACCATCAATACTAGGATCAGCTGTTCCTGGCCTGGGGCAACCACCATCCTCTTCGCACACCGTTGATCATCTCTCATCACCATCATCTTCAATCTTCAACACAAGGCTTCATCAAGATCATCAGTTCACACAAACCACCCATCAAGATTTGACTCGGAACGATCACCCAGCAAACCCTAACCCTAGCCTCGGACCCACGCTCAGTGTTCCTCATACCAACTACCATCAAGCAATGGCTTCCGCTTTCCCACATATGTCAGCTACTGCATTGCTGCAAAAAGCAGCACAAATGGGAGCAACAATGAGCAGCAGCAAGGCTAGTACTGCTACTGGTAATTCGTCGTCGTCATCTTCACCAGCTCATCATGCCGCCTTGACCAGACCCCACCAACAACCACCACCCCCACAACAAGCTCACGTGTCTGCAACACCTGAACATCCTGCAGGCAACAATAAAACAAAAACAACAACTGGGTTTGGTTTGAATTTGTCTTCACGTGAAGGAGTTGTCCATGGCTTGACTCCTTTTGGGACTAAAACTTCTGGGGGAGGCTCATCAGGTCCTTTTATCCAAGAAATGCTCATGAATACTTCTTTTTCATCTGGGTATGCTGCTGCTTCTCCATTTGATGATGCTTTGACATTTGGTGGGGTTTTTAATTCAAAGAAAGAGCCTCATCTGAATCATAGTTTCAATGAATCATCGTCACTCTCCAGAACAAGTGGAATTAATGATCATGGAGAAGAAATGACAAGAGATTTCTTAGGGCTTAGAGCTCTCTCTCAAACTGATATTCTCAACATTGCTGGGCTTGGTAACTGCATTGACACAAGATCTTCTCATGAGCAACAACTCAATCATTCTCAAAAACCATGGCAAGGTTAG
Protein Sequence:
- >orange1.1g007898m|Citrus_sinensis|C2H2|orange1.1g007898m
MMKGLIFHQQQQQQQQVLEENMSNLTSQSGTEASVSSGNIRGAETTNHQQYFATPPTQAQPPAKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESTRAITGTNPILSSSSHHQPGIVAGASSHVNLQIPQFNPQDFSAFSLKKEQQSYSLRQEMPPWLGSQQPSILGSAVPGLGQPPSSSHTVDHLSSPSSSIFNTRLHQDHQFTQTTHQDLTRNDHPANPNPSLGPTLSVPHTNYHQAMASAFPHMSATALLQKAAQMGATMSSSKASTATGNSSSSSSPAHHAALTRPHQQPPPPQQAHVSATPEHPAGNNKTKTTTGFGLNLSSREGVVHGLTPFGTKTSGGGSSGPFIQEMLMNTSFSSGYAAASPFDDALTFGGVFNSKKEPHLNHSFNESSSLSRTSGINDHGEEMTRDFLGLRALSQTDILNIAGLGNCIDTRSSHEQQLNHSQKPWQG*