Information report for ONIVA04G20460.1
Gene Details
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Functional Annotation
- Refseq: NP_001338648.1 — uncharacterized protein LOC542199
- Refseq: XP_008668634.1 — uncharacterized protein LOC542199 isoform X1
- Refseq: XP_008668635.1 — uncharacterized protein LOC542199 isoform X1
- TrEMBL: A0A0E0H4G8 — A0A0E0H4G8_ORYNI; Uncharacterized protein
- STRING: ONIVA04G20460.1 — (Oryza nivara)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Hordeum vulgare: MLOC_56120.1
- Oryza sativa: OsIDD10;OsNKD
- Panicum virgatum: Pavir.7KG296000.2.p, Pavir.7KG296000.1.p, Pavir.7NG287500.1.p
- Triticum aestivum: Traes_2DL_540050272.2, Traes_2BL_58A855C7B.2, Traes_2AL_7ABA7B7C8.1
- Zea mays: GRMZM2G129261_P03, GRMZM2G129261_P02, GRMZM2G129261_P01
Sequences
CDS Sequence:
- >ONIVA04G20460.1|Oryza_nivara|C2H2|ONIVA04G20460.1
ATGGCATCGAATTCATCGGCTGCAGCTGCGGCGGCGTTCTTCGGGATTAGCAGGGATGGGGACCAGCATGACCAGATTAAGCCGCTGATATCACACCAACAGCACCAGCACCAGCACCAGCAGCTGGCAGCGTCACTGACCGGCGTGGCAACAGCGGCGCCTACTGCGGCGTCCAGCCAAGGCGCACCGCCGGCGGCGCCACCGGCCAAGAAGAAGAGAAATCTACCAGGCAATCCATCCAACCAACCCAAGTACCCTTTTACGATTTCAGCCATGCATGCATACATATCTGTTCTCCGAGATCTTGTCTCGATTGATTGGACAGACCCGGACGCGGAGGTGATAGCGCTGTCGCCCAAGACGCTGCTGGCGACGAACCGGTTCGTGTGCGAGGTGTGCAACAAGGGATTCCAGCGGGAGCAGAACCTGCAGCTGCACCGGCGAGGCCACAACCTGCCGTGGAAGCTGAAGCAGAAGAACCCGGCGCAGGCGCAGCGCCGCCGCGTGTACCTGTGCCCGGAGCCGACGTGCGTCCACCACGACCCGGCCCGCGCCCTCGGCGACCTCACCGGCATCAAGAAGCACTTCTGCCGCAAGCACGGCGAGAAGAAGTGGAAGTGCGACAAGTGCTCCAAGCGCTACGCCGTCCAGTCCGACTGGAAGGCCCACTCCAAGATCTGCGGCACCCGCGAGTACCGCTGCGACTGCGGCACCCTCTTCTCCAGGAGGGACAGCTTCATCACGCACAGGGCGTTCTGCGACGCGCTGGCGCAGGAGAGCTCCAGGCTGCCGCCGACGAGCCTCAGCAGCCTCACCAGCCACCTGTACGGCGCCAGCAACGCCGGGAACATGGCGCTCAGCCTCTCCCAGGTGGGCTCCCACCTCACCACCTCGCTCCAGGACGGCGGCGGCCACCACCACCACCCGTCCCCCGAGCTGCTCCGCCTCGGCGGCGCGGGCGGTGGCGGCGGGGCCGGCGGCGGGAGCAGCATCGCCGCGCGGCTCGACCACCTGCTGTCGCCGTCGGGCGCGTCTGCCTTCCGCCCCCCGCAGCCGGCGTTCTTCCTCAACGCCGCCGCGGCGGCGGCGGCGACTGGGCAGGATTTCGGCGACGACGCTGGCAATGGGCAGCACTCGTTCCTGCAGGCCAAGCCGTTCCATGGCCTCATGCAGCTGCCCGACCTCCAGGGCAATGGCGCCGGGGGCCCCGGCGCGCCGGGACCTAACCTCTTCAACCTCGGCTTCTTCGCCAACAACGGCAACAGCTCGGGGTCTAGCCATGAGCATGCCAGCCAGGGGCTGATGAGCAATGACCAGTTCAGCGGCGGTGCAGGCGGCGGCGGCGGTTCTGACGCGTCGGCGGCGGGGATCTTCGGCGGTAACTTCGTTGGTGGCGACCATGTTTCTCCTGCAGGGCTCTACAACGATCAAGCGGCGATGCTGCCGCAGATGTCGGCGACGGCTCTCCTCCAGAAGGCGGCGCAGATGGGCGCGACGTCGAGCGCGAACGGCCCGGGCTCCATGTTCCGTGGCTTCGTCGGCTCGTCGCCGCACATGCGGCCGGCGGCGCAGCACATGGACCAGAGCGACGCGCACCTCAACGACCTGATGAACTCCCTCGCCGGCGGCGGCGTCAACGCCGCCGCCATGTTCGGCGGCACCAACGGCGGCGGCGTCCCTGGCGCGGGGATGTTTGATCCGAGGCTGTGCGACATCGAGCACGAGGTGAAGTTCAGCCAGGGCGGCGGAGGCGGAGGCGGCGCCGGCGCCGGCACCGGCGACGGGACGCGGGACTTCCTCGGCGTCGGCGGTGGCGGCATCGTCCATGGCATGTCGACGCCGAGAGGAGACCACCACCAGAGCAGCAGCGACATGAGCTCCTTGGAGGCCGAGATGAAGTCCGCATCGTCCTTCAACGGGAGAAGGATGCCATGA
Protein Sequence:
- >ONIVA04G20460.1|Oryza_nivara|C2H2|ONIVA04G20460.1
MASNSSAAAAAAFFGISRDGDQHDQIKPLISHQQHQHQHQQLAASLTGVATAAPTAASSQGAPPAAPPAKKKRNLPGNPSNQPKYPFTISAMHAYISVLRDLVSIDWTDPDAEVIALSPKTLLATNRFVCEVCNKGFQREQNLQLHRRGHNLPWKLKQKNPAQAQRRRVYLCPEPTCVHHDPARALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQESSRLPPTSLSSLTSHLYGASNAGNMALSLSQVGSHLTTSLQDGGGHHHHPSPELLRLGGAGGGGGAGGGSSIAARLDHLLSPSGASAFRPPQPAFFLNAAAAAAATGQDFGDDAGNGQHSFLQAKPFHGLMQLPDLQGNGAGGPGAPGPNLFNLGFFANNGNSSGSSHEHASQGLMSNDQFSGGAGGGGGSDASAAGIFGGNFVGGDHVSPAGLYNDQAAMLPQMSATALLQKAAQMGATSSANGPGSMFRGFVGSSPHMRPAAQHMDQSDAHLNDLMNSLAGGGVNAAAMFGGTNGGGVPGAGMFDPRLCDIEHEVKFSQGGGGGGGAGAGTGDGTRDFLGVGGGGIVHGMSTPRGDHHQSSSDMSSLEAEMKSASSFNGRRMP