Information report for ONIVA01G43630.1
Gene Details
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Functional Annotation
- Refseq: XP_015641300.1 — zinc finger protein STOP1 homolog
- Refseq: XP_015641307.1 — zinc finger protein STOP1 homolog
- Swissprot: Q943I6 — STOP1_ORYSJ; Zinc finger protein STOP1 homolog
- TrEMBL: A0A0E0FWB8 — A0A0E0FWB8_ORYNI; Uncharacterized protein
- STRING: ONIVA01G43630.1 — (Oryza nivara)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0010044 — Biological Process — response to aluminum ion
- GO:0010447 — Biological Process — response to acidic pH
- GO:0005634 — Cellular Component — nucleus
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Brachypodium distachyon: Bradi2g56320.1.p
- Hordeum vulgare: MLOC_10987.1
- Triticum aestivum: TRAES3BF044200110CFD_t1
- Zea mays: GRMZM2G075956_P02, GRMZM2G075956_P01
Sequences
CDS Sequence:
- >ONIVA01G43630.1|Oryza_nivara|C2H2|ONIVA01G43630.1
ATGGAAAATTGCCTAAGGTCAACGGGAGCCAGGAACCAGCAGGGCTGCTCCTCCTATAAAGCCACCCACCCGCCCTCCCGAGTCCCATTTTTGCTGCCCTGTGGAGCCTCAAATTCTACTCGCGTTCTTTTGCATCTTCAGCTCCACATCAGGAGTGATCCCTGTTACTTGGTGCCACCACTTTCTCTGCTAAGAAATCGTCTCGCCGTTCGCCACCACGGTGACTCGACTAGTATTTCCCCTCGCTCGCCGTCGACTCCTCCGCTCGCCGCCGCCGCCGCCCTCGCCGTCGCCGTGGCCTCCGCCGATCCGATCCCAATCCATCCCGGCGACCGCGAGCAGGGCGCGGGTGGCTTGGGAAGAAGTTCAGAGACATCCTTGAAAGCCTTGCCATCAATGGCAAGTAATGCAACAAGGAATACTGATCCTGACCAACAGGGTGTTCGATTCAGTTCCATGGACCAGCCTCCATGTTTTGCAAGACCTGGTCAATCGTTCCCTGCTTTTCCTCCACTCTTTGGGGTTCAGTCTTCCAGCTTGTATTTACCTGATGACATTGAAGCTAAAATCGGTAACCAGTTCGAATCAAATCCTTCCCCGAATAATCCTACAATGGATTGGGACCCTCAGGCAATGCTGAGCAACTTATCCTTCCTTGAGCAGAAGATCAAGCAGGTAAAAGACATCGTGCAGTCTATGAGTAATCGTGAGAGCCAAGTTGCTGGTGGTTCCAGCGAGGCACAAGCAAAGCAGCAGCTTGTCACTGCTGATCTCACTTGTATTATAATTCAGCTTATTTCAACAGCTGGTTCCTTGCTTCCTTCGATGAAGAACCCAATCAGCAGCAACCCGGCACTCAGACATCTCAGTAACACACTTTGTGCTCCTATGATCCTGGGCACCAATTGTAACCTGCGACCAAGCGCAAACGACGAAGCCACAATTCCTGACATTAGCAAGACCCATGACTATGAGGAGCTGATGAATAGCCTTAATACTACTCAGGCAGAAAGCGATGAGATGATGAACTGCCAAAATCCTTGTGGTGGGGAAGGGTCAGAACCGATTCCAATGGAAGACCATGATGTGAAGGAGAGTGATGATGGTGGTGAGAGAGAGAATCTCCCCCCTGGGTCTTATGTAGTATTGCAATTAGAGAAGGAGGAGATTTTAGCACCACATACTCACTTCTGCTTGATCTGTGGCAAGGGTTTCAAAAGAGATGCTAATCTTAGGATGCACATGAGGGGCCATGGAGACGAGTACAAAACTGCGGCAGCTCTTGCGAAACCTTCGAAAGATTCTAGCTCAGAGTCTGCACCAGTTACAAGGTACTCGTGCCCATATGTTGGCTGCAAGCGGAACAAAGAGCACAAGAAGTTCCAGCCTCTCAAGACAATCCTGTGTGTGAAGAACCACTACAAGAGAAGCCACTGTGACAAGAGCTACACCTGCAGCCGTTGCAACACCAAGAAGTTCTCAGTTATCGCGGACTTGAAGACTCATGAAAAGCACTGTGGCCGCGACAAGTGGCTATGCTCGTGTGGAACTACCTTCTCAAGAAAAGACAAGTTATTTGGGCATGTTGCTCTTTTCCAAGGGCACACGCCTGCACTCCCTATGGATGATATCAAAGTAACAGGAGCATCAGAGCAACCTCAAGGCAGCGAGGCGATGAACACCATGGTGGGGAGCGCTGGGTATAACTTCCCCGGTAGCTCATCGGACGACATCCCAAATCTTGACATGAAGATGGCCGATGATCCGCGCTATTTCTCGCCATTGAGCTTTGATCCTTGCTTCGGTGGGCTTGATGACTTCACTCGACCTGGATTTGACATCTCTGAGAATCCCTTCTCCTTCTTGCCCTCAGGATCATGCAGCTTCGGGCAGCAGAACGGAGACAGCTGA
Protein Sequence:
- >ONIVA01G43630.1|Oryza_nivara|C2H2|ONIVA01G43630.1
MENCLRSTGARNQQGCSSYKATHPPSRVPFLLPCGASNSTRVLLHLQLHIRSDPCYLVPPLSLLRNRLAVRHHGDSTSISPRSPSTPPLAAAAALAVAVASADPIPIHPGDREQGAGGLGRSSETSLKALPSMASNATRNTDPDQQGVRFSSMDQPPCFARPGQSFPAFPPLFGVQSSSLYLPDDIEAKIGNQFESNPSPNNPTMDWDPQAMLSNLSFLEQKIKQVKDIVQSMSNRESQVAGGSSEAQAKQQLVTADLTCIIIQLISTAGSLLPSMKNPISSNPALRHLSNTLCAPMILGTNCNLRPSANDEATIPDISKTHDYEELMNSLNTTQAESDEMMNCQNPCGGEGSEPIPMEDHDVKESDDGGERENLPPGSYVVLQLEKEEILAPHTHFCLICGKGFKRDANLRMHMRGHGDEYKTAAALAKPSKDSSSESAPVTRYSCPYVGCKRNKEHKKFQPLKTILCVKNHYKRSHCDKSYTCSRCNTKKFSVIADLKTHEKHCGRDKWLCSCGTTFSRKDKLFGHVALFQGHTPALPMDDIKVTGASEQPQGSEAMNTMVGSAGYNFPGSSSDDIPNLDMKMADDPRYFSPLSFDPCFGGLDDFTRPGFDISENPFSFLPSGSCSFGQQNGDS