Information report for OMERI12G06120.2
Gene Details
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Functional Annotation
- Refseq: XP_015620626.1 — lysine-specific demethylase REF6
- Swissprot: Q5N712 — JM705_ORYSJ; Lysine-specific demethylase JMJ705
- TrEMBL: A0A0E0FBA8 — A0A0E0FBA8_9ORYZ; Uncharacterized protein
- STRING: OMERI12G06090.1 — (Oryza meridionalis)
- GO:0009741 — Biological Process — response to brassinosteroid
- GO:0009826 — Biological Process — unidimensional cell growth
- GO:0010228 — Biological Process — vegetative to reproductive phase transition of meristem
- GO:0033169 — Biological Process — histone H3-K9 demethylation
- GO:0035067 — Biological Process — negative regulation of histone acetylation
- GO:0048366 — Biological Process — leaf development
- GO:0005634 — Cellular Component — nucleus
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Oryza sativa: LOC_Os12g18150
Sequences
CDS Sequence:
- >OMERI12G06120.2|Oryza_meridionalis|C2H2|OMERI12G06120.2
ATGTCGCTGCAGCCGCCGGCGGTGGAGCCGCCGGAGTGGCTGCGGACGCTGCCCGTGGCGCCGGAGTACCACCCGACGCTGGCGGAGTTCGCCGACCCCATCGCCTACATCCTCAGGATCGAGCCGGAGGCGTCCCGCTACGGCATCTGCAAGATCGTGCCCCCGCTCCCGCGGCCCCCCGAGGACGACACCTTCCGCCGCCTCCAGGCCGCCTTCGCCGCCGCGGCCTCCTCCAATGGCGCCGGTGGCGACCCCTCCCCGACCTTCCCCACGCGGCTCCAGCAGGTCGGCCTCTCCGCCAGGAACCGCCGCGCCGCCAGCCGCCGGGTGTGGGAGAGCGGGGAGCGCTACACCCTGGAGGCGTTCCGCGCCAAGGCGGCCGAGTTCGAGCCCCCGAGGCACGCCGCGCCGCCCAAGAACCCCACCCACCTCCAGCTCGAGGCCCTCTTCTGGGCCGCCTGCGCCTCCAGGCCCTTCAGCGTCGAGTACGGCAACGACATGCCCGGCTCCGGCTTCGCCTCCCCCGACGAGCTCCCCGACGCCGCCAATGCCACCGACGTCGGGGAGACGGAGTGGAACATGCGGGTGGCGCCCCGCGCCCGGGGGTCGCTGCTCCGCGCCATGGCCCGCGACGTGGCGGGCGTCACCACGCCGATGCTGTACGTGGCCATGCTCTACAGCTGGTTCGCCTGGCACGTGGAGGACCACGAGCTCCACAGCCTCAACTTCCTCCACTTCGGCAAGGCCAAGACCTGGTACGGCGTCCCCCGCGACGCCATGCTCGCCTTCGAGGAGACGGTGCGCGTCCACGGCTACGCCGACGACCTCAATGCCATCATGGCCTTTCAAACGTTAAATGAGAAGACAACTGTCTTATCTCCTGAGGTGCTTCTTTCTGCTGGTGTTCCCTGCTGCAGATTGGTTCAAAAAGCGGGAGAATTTGTTATCACATTCCCTGGAGCTTATCATTCAGGCTTTAGCCATGGATTTAATTGTGGGGAAGCATCAAATATTGCAACTCCCCATTGGTTACAAGTGGCTAAAGAAGCTGCAATCCGGAGGGCTTCAACTAATTGTGGTCCGATGGTGTCTCATTATCAGCTGCTTTATGAGCTAACACTCTCATTGCGTCCAAGGGAGCCTAAGAATTTCTATTCTGTTCCAAGAAGCTCACGTTTAAGGGACAAGAATAAGAATGAAGGTGATATAATGGTCAAAGAAAATTTTGTTGGAAGTGTAACCGAAAACAACAATTTGCTTAGCGTCCTTCTGGATAAGAATTCTTGTATAATTGTTCCAAACACTGATTTCTTCGTTCCATCCTTTCCTGTTGCACTGGAATCTGAAGCAACTGTTAAACAAAGGTTTACAGCTGGTCCCTGCAGTATTAGCCAGCAAGGAGCAGAAAATATGGCTGTTGATCATGTGGCTGTAGACAAGGTTACAGATATTCAGGACATGAGTGGATCCTTATATCCTTGTGAAACCAGTCCAGTGTCTGGAACAGATGATAATGTAAAGCATGCCGTAAGTTTGGCCCATGTCTCTGATCGGTGTAGAGAACTATATGCCAGCAATACAGATGGATGCACCTCTGCTCTTGGGCTTCTAGCTTCTGCATATGACTCATCAGACTCTGATGATGAAACAACTGAGGATGTTTTGAAACATAGCAAGAAAAATGATTCAGTAAACCAAAGCACGGATACTCAAATCTTGGAAACATCAGCTAGCTGTTCCAGTACAGTTCGGTGTCAAAAGACAAATTCACACTCGCATGAAGAGGAATGTGAGGCAAGAGCCACATCATTGATGAAACCTGTAAGCCATAATAGTAGGCCCATTAGTCAGTCTAACAGGGATACAGATATCGACCAGTTTATAGAACTGGGAAAGTCAGGAACACAGTGTTCAGGTTATCTTGATTTGGTTGATGATCTAACTACATCAGTTTTAAAATCCTCTTCAGATACTTGTGTAAGTGCAGCTAAAGCCTCAATGGATCCAGATGTTCTGACCATGCTCAGGTACAATAAAGACTCTTGCAGAATGCATGTGTTTTGTCTTGAACATGCTTTGGAAACATGGACACAGCTTCAACAAATCGGTGGTGCTAATATTATGCTTTTGTGCCATCCAGAATACCCTAGAGCAGAGTCAGCAGCAAAAGTCATAGCAGAAGAACTTGGTATCAAGCATGATTGGAAAGATATCACTTTCAAAGAAGCAACTGAAGAGGACGTTAAAAAGATTCGGTTGGCTTTACAGGATGAAGATGCTGAACCCACAGGCAGTGACTGGGCAGTCAAAATGGGTATCAACATATATTACAGTGCCAAACAGAGCAAATCACCACTTTACAGCAAGCAGATACCATACAATTCCATCATTTATAAGGCATTCGGCCAAGAAAACCCAGACAGTTTGACAGATTATGGATGTCAAAAGTCAGGCTCAACAAAGAAAAAGGTGGCTGGGTGGTGGTGTGGGAAAGTTTGGATGTCAAATCAAGTTCATCCACTTCTAGCTCGTGAGCGTGAAGAACAGAACAGTAGTGTAGTGTACGGCAAAGCAATGTTCACTACTATTTCCCATGGCAAAGTACCAGATGAAGCGTCAACAAGATGCAATACAAGCAACCGAACCCCATCAAAAAGAACATCAAGAAGAAAAAAGGGGGTATCTGCTGAGAAATCTAAACCAAAAAACAAGAGATCCACTGCTTCTGATGAAGCTAGTATGCATTGCAGTGGCCTTGGGATGAACTCTGGAGTTATCCATGACCAAACTGAAAATTTTGATGATTATGACAAACATGGCAATGGAGATGAAATTGAGGAAGGAACAAATCCTCAGAAATATCAACAACATAAATTGCAAAATGTGACCAGGAAATCAAGTTCTAAGAAGCGGAAGGATGAGAAAAGAACAGATAGTTTTCATGAACTATATGACGAGGATAATGGTGTGGATTATTGGCTTAACATGGGTAGTGGACATGATGCCACACTAGGTAACTCTCGACAACAAAGTCCTGATCCAGTGAAAGTGAAATCTGGAGGCAAATTGCAAGGTAAGAGAAAATCTAGCAAGTACAAGTCCAATGATGATTTGTTGAATGAAGAAAATAAGTTACAAAAGATGAACAAAAAATCAAGCTCTAAGAAGCAAAAGAATGATAAGATAAATAGACAACTTCAAGAAGATCAAACCGAAGATGACCATATGGACCACTTAGTTGACGTAGCGGTTGCAGATGAAGTCACACTAGACAATGAGGATAAAATTACAGAAGACAAAATTGATGACGTGAAAGTGAAATCTAGAGGAAAATCGCAAAATGGTAAGAGAAAAGGCAGCAAACATCAGGCTAGCGATGGTTTGCGCGCTGGAAATAAAGTGGCCAAATTTCCGTGTGATATAGAAGGATGTGACATGAGCTTCAGTACCCAGCAGGACTTGTTATTGCATAAGCGTGACATTTGTCCTGTCAAAGGATGCAAGAAGAAGTTCTTCTGCCACAAGTACTTGCTTCAGCACCGGAAGGTGCATATAGATGAAAGGCCACTTAAGTGTACATGGAAGGGGTGTAAGAAGGCATTCAAGTGGCCATGGGCGAGGACGGAGCACATGAGAGTCCATACGGGGGTAAGACCTTACGAGTGCCAGGAACCTGGCTGTGGTCAGACATTCCGATTCGTTTCAGATTTCAGCCGCCACAAGAGAAAGACTGGCCATTCCTCTGATAAGAGAAGAAAGAACAGTACATAA
Protein Sequence:
- >OMERI12G06120.2|Oryza_meridionalis|C2H2|OMERI12G06120.2
MSLQPPAVEPPEWLRTLPVAPEYHPTLAEFADPIAYILRIEPEASRYGICKIVPPLPRPPEDDTFRRLQAAFAAAASSNGAGGDPSPTFPTRLQQVGLSARNRRAASRRVWESGERYTLEAFRAKAAEFEPPRHAAPPKNPTHLQLEALFWAACASRPFSVEYGNDMPGSGFASPDELPDAANATDVGETEWNMRVAPRARGSLLRAMARDVAGVTTPMLYVAMLYSWFAWHVEDHELHSLNFLHFGKAKTWYGVPRDAMLAFEETVRVHGYADDLNAIMAFQTLNEKTTVLSPEVLLSAGVPCCRLVQKAGEFVITFPGAYHSGFSHGFNCGEASNIATPHWLQVAKEAAIRRASTNCGPMVSHYQLLYELTLSLRPREPKNFYSVPRSSRLRDKNKNEGDIMVKENFVGSVTENNNLLSVLLDKNSCIIVPNTDFFVPSFPVALESEATVKQRFTAGPCSISQQGAENMAVDHVAVDKVTDIQDMSGSLYPCETSPVSGTDDNVKHAVSLAHVSDRCRELYASNTDGCTSALGLLASAYDSSDSDDETTEDVLKHSKKNDSVNQSTDTQILETSASCSSTVRCQKTNSHSHEEECEARATSLMKPVSHNSRPISQSNRDTDIDQFIELGKSGTQCSGYLDLVDDLTTSVLKSSSDTCVSAAKASMDPDVLTMLRYNKDSCRMHVFCLEHALETWTQLQQIGGANIMLLCHPEYPRAESAAKVIAEELGIKHDWKDITFKEATEEDVKKIRLALQDEDAEPTGSDWAVKMGINIYYSAKQSKSPLYSKQIPYNSIIYKAFGQENPDSLTDYGCQKSGSTKKKVAGWWCGKVWMSNQVHPLLAREREEQNSSVVYGKAMFTTISHGKVPDEASTRCNTSNRTPSKRTSRRKKGVSAEKSKPKNKRSTASDEASMHCSGLGMNSGVIHDQTENFDDYDKHGNGDEIEEGTNPQKYQQHKLQNVTRKSSSKKRKDEKRTDSFHELYDEDNGVDYWLNMGSGHDATLGNSRQQSPDPVKVKSGGKLQGKRKSSKYKSNDDLLNEENKLQKMNKKSSSKKQKNDKINRQLQEDQTEDDHMDHLVDVAVADEVTLDNEDKITEDKIDDVKVKSRGKSQNGKRKGSKHQASDGLRAGNKVAKFPCDIEGCDMSFSTQQDLLLHKRDICPVKGCKKKFFCHKYLLQHRKVHIDERPLKCTWKGCKKAFKWPWARTEHMRVHTGVRPYECQEPGCGQTFRFVSDFSRHKRKTGHSSDKRRKNST