Information report for OB12G17360.1
Gene Details
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Functional Annotation
- Refseq: XP_006664493.1 — PREDICTED: lysine-specific demethylase REF6-like
- TrEMBL: J3NCM8 — J3NCM8_ORYBR; Uncharacterized protein
- STRING: OB12G17360.1 — (Oryza brachyantha)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Oryza sativa: LOC_Os12g18150
- Setaria viridis: Sevir.3G311800.2.p, Sevir.3G311800.1.p
Sequences
CDS Sequence:
- >OB12G17360.1|Oryza_brachyantha|C2H2|OB12G17360.1
ATGCCCGGCTCCGGCTTCGCCTCGCCGGACGAGCTGGGCAATGCGGCCGCGGCGGCGCCGGGCGACGTCGGGGAGACCGAGTGGAACATGCGGGTGGCGCCGCGCGCCCGGGGCTCGCTGCTCCGCGCCATGGCCCGCGACGTGGCGGGGGGCACGTCGCCGATGCTGTACGTGGCCATGCTCTACAGCTGGTTCGCCTGGCACGTGGAGGACCACGAGTTGCACAGCCTCAACTTCCTCCACTTCGGCAAGTCCAAGACCTGGTACGGCGTCCCCCGCGACGCCATGCTCGCCTTCGAGGAGACGGTGCGCGTGCACGGCTACGCCGACGACCTCAACGCCATCATGGCCTTTCAAACGTTAAATGAGAAGACAACTGTCTTATCCCCTGAGGTGCTTCTTTCTGCTGGTGTTCCCTGCTGCAGGTTGGTTCAAAAAGCTGGAGAATTTGTTATAACATTCCCTGGAGCTTATCATTCAGGCTTTAGCCATGGATTTAATTGTGGTGAAGCATCAAATATTGCAACTCCCCATTGGTTACAAGTGGCTAAAGAAGCTGCAATCCGGAGGGCTTCAACTAATTGTGGTCCAATGGTGTCTCATTATCAGCTGCTTTATGAGCTAGCACTCTCATTGCGTCCAAGGGAACCTAAAAATTTCCATTCTGTGCCAAGAAGCTCACGTTTAAGGGACAAGAATAAGAATGAAAGTGATATAATGGTCAAGGAAAATTTTGTTGGAAGTGTAACTGAAAACAACAATTTGCTTAGCCTCCTTCTGGATAAGAGTTCTTGTATAATTGTTCCGAATATTGCTTTCCCCATTCCATCCTTTCCTCTGACAGTGGAATCTGAAGTTACTGTTAAACAAAGATTTACAACCGGTCCCTGCAGTATTAGCGAGCAAGGAGTGGAAAATATTGCTGTTGATCATGTTGCTGTAGACAAGATTACAGATGCTCAGGACATGAGTGGGTCCCTATATGATTGTGAACCCAATCTTATGGCCTGTAGCAGTAGAAAGCTTTATGAAACAAAAAATGGCACACAGGACGTTGCTACTTTGTGCTTATCTAACTCAGATATTCAGAGTAGAGGGATGGATGAAGCAAGATCACATTCAGCAGGTGGTATCTTAGATCAAGGGCGGTTGCCATGTGTTCAGTGTGGAATATTAAGCTTTGCATGTGTAGCCATCATTCAGCCTAAAGAAGCAGCAGTACAGTTTATCATGTCTAGAGAGTGCATCTCATCTAGTGCAAAACATGGAGAAATTGCATCTCATGATACCTCAAACTGGATAAACCAAAGTCATGATGATATTGGTCCTCCACCAGGTTTAGCTTCTGGAACAGATGATAATGTGAAGCATGCCATAAGTTCTGCCCATGTCTCTGACCGGTGTAGACAACTATATGGCAGCAACACTGATGGATGCCCATCCGCTCTTGGGCTTCTAGCTTCTGCTTATGACTCGTCTGACTCTGATGAGGAAACAACTAAGGATATATCAAAACGTAGTGAGAAAAATGATTTATTCAACCAAAGCACAAATACTCAGATCTCGTCAGCTAGCTATTCCAGTACAGTTCAGCGTCAAAAGACAAATTCGCACTTTCAAGAAGAGGAATGTGAAGCAAGAGCCTCATCATTGATGAAACTTGTAAAACATAATAGTCAATCTATCAGAGATGCAGATATCTGCCTGGGAAATTCAGGAGCATCGTATTCGGGGTATCTTGATTTGGTTGATGATATAACTACATCAGTTCTAAAATCGTCTTCAGATACTTGTGTAAGAGCAGCTAAAGCTTCAGTGGATCCAGATGTTCTGACCATGCTCAAGTACAATAAAGATTCTTGCAGAATGCATGTGTTTTGTCTCGAACATGCTTTGGAAACATGGACACAGCTTCAACAAATTGGTGGTGCTAATATAATGCTTTTGTGCCATCCAGAGTACCCTAGAGCAGAGACAGCAGCAAGAGTCATAGCAGACGAACTTGGTATCAAGCATGATTGGAAAGATATCACTTTTAAAGAAGCAACAGAAGAGGAGATCAGAAAGATTAAGTTGGCTCTACAGGATGAAGATGCTGAACCCACAGGCAGTGACTGGGCAGTTAAAATGGGTATCAACATATATTACAGTGCCAAACAAAGCAAATCACCACTTTACAGCAAGCAGATACCATACAATTCCATCATTTATAAGGCATTTGGCCAAGAAAATCCAGACAGTCTGATAGATTATGAAGGACAAAAGTCAGGCTCAACAAAGAAAAAGGTGGCTGGGTGGTGGTGTGGGAAAGTTTGGATGTCAAACCAAGTTCATCCACTTTTAGCTCGTGAGCGTGAAGAACAGGATGGTAGCATAGTGTACAGCAAAGCAATGTCCACTGCTATTTCCCACGGCAAAGTACAAGATGAGGCATCGACACGATGCAATACAATCAACAGAAGCCTATCAAAAAGAACATCAAGAAGAAAGAAGGGGGGATCTGCTGAGAAATCTAAAGCAAAAAAGAAGAGAGCAACTGCTTCTGATGAAGCTAATATGCATTACAGTGAACTTGGGATAAGCTCTGAAGTTATCCATGACCAACTTGAAAACTCTGATGATCGAGACAAACATGGCGATGGAGATGAAATTGAGGAAGCAACAAACGCTCAGAAATATCAACAACATGACTTGCAAAACGTGACCAGGAAATCAAGTTCTAAGAAGAGAAAGGATGAGAAAAAAAAAGGCAGTTACCGTGAACTGTATGACAAGGATGATGATGTGAGTTATTGGCTTAACACGGGTAGCAGAGATGATTCCACAATAGGCAACTCAGATAACACTCGACAACAAAGTCCTGATCCATTGAAAGTAAAATCTGGAGGCAAATTGCAAGGTAATAAGAGAAAATCCAACAAGTACAAGTCCAACGATGATTTGTTGAATGAAGATAATAAATTTCAGAAGATGAACAAGACATCAAGTTCTAAGAAGCAAAAGAATGAGAAGATAAATAGACAATATCAAGAGGATCAAAACAAGGATGACCATATGCTTGATGTAGATGTTGGAGATGAAGCGACACTAGATAGTGAGGATAAAATTACAGATGATAAAACTGAAGACATGAAAGTAAAATCTAAAGGAAAATTGCAAAGTAGCAAGAGAAAAACCAGCAAACGTCAAACTAGTGACGGTTTGCGCAATGGAAATAGAGTAGCCAAATTTGCATGCGATATAGAAGGATGTGACATGAGCTTCAGTACCCAGCAGGACTTGTTACTGCATAAGCGCGACATTTGTCCTGTAAAAGGATGCAAGAAGAAGTTCTTCTGCCACAAGTACTTGCTTCAGCACCGCAAAGTGCACATGGATGAAAGGCCGCTCAAGTGTATGTGGAAGGGGTGCAAGAAAGCATTCAAGTGGCCATGGGCGAGGACAGAGCACATGAGGGTCCATACTGGGGTGAGACCTTACGAATGCCAGGAACCTGGCTGCAGTCAGACATTTCGATTCGTGTCTGATTTCAGCCGCCACAAGAGAAAGACTGGCCATTCCTGTGATAAGAGAAGAAAGAAAAGTACATAA
Protein Sequence:
- >OB12G17360.1|Oryza_brachyantha|C2H2|OB12G17360.1
MPGSGFASPDELGNAAAAAPGDVGETEWNMRVAPRARGSLLRAMARDVAGGTSPMLYVAMLYSWFAWHVEDHELHSLNFLHFGKSKTWYGVPRDAMLAFEETVRVHGYADDLNAIMAFQTLNEKTTVLSPEVLLSAGVPCCRLVQKAGEFVITFPGAYHSGFSHGFNCGEASNIATPHWLQVAKEAAIRRASTNCGPMVSHYQLLYELALSLRPREPKNFHSVPRSSRLRDKNKNESDIMVKENFVGSVTENNNLLSLLLDKSSCIIVPNIAFPIPSFPLTVESEVTVKQRFTTGPCSISEQGVENIAVDHVAVDKITDAQDMSGSLYDCEPNLMACSSRKLYETKNGTQDVATLCLSNSDIQSRGMDEARSHSAGGILDQGRLPCVQCGILSFACVAIIQPKEAAVQFIMSRECISSSAKHGEIASHDTSNWINQSHDDIGPPPGLASGTDDNVKHAISSAHVSDRCRQLYGSNTDGCPSALGLLASAYDSSDSDEETTKDISKRSEKNDLFNQSTNTQISSASYSSTVQRQKTNSHFQEEECEARASSLMKLVKHNSQSIRDADICLGNSGASYSGYLDLVDDITTSVLKSSSDTCVRAAKASVDPDVLTMLKYNKDSCRMHVFCLEHALETWTQLQQIGGANIMLLCHPEYPRAETAARVIADELGIKHDWKDITFKEATEEEIRKIKLALQDEDAEPTGSDWAVKMGINIYYSAKQSKSPLYSKQIPYNSIIYKAFGQENPDSLIDYEGQKSGSTKKKVAGWWCGKVWMSNQVHPLLAREREEQDGSIVYSKAMSTAISHGKVQDEASTRCNTINRSLSKRTSRRKKGGSAEKSKAKKKRATASDEANMHYSELGISSEVIHDQLENSDDRDKHGDGDEIEEATNAQKYQQHDLQNVTRKSSSKKRKDEKKKGSYRELYDKDDDVSYWLNTGSRDDSTIGNSDNTRQQSPDPLKVKSGGKLQGNKRKSNKYKSNDDLLNEDNKFQKMNKTSSSKKQKNEKINRQYQEDQNKDDHMLDVDVGDEATLDSEDKITDDKTEDMKVKSKGKLQSSKRKTSKRQTSDGLRNGNRVAKFACDIEGCDMSFSTQQDLLLHKRDICPVKGCKKKFFCHKYLLQHRKVHMDERPLKCMWKGCKKAFKWPWARTEHMRVHTGVRPYECQEPGCSQTFRFVSDFSRHKRKTGHSCDKRRKKST