Information report for OB08G30010.1
Gene Details
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Functional Annotation
- Refseq: XP_015695695.1 — PREDICTED: protein indeterminate-domain 5, chloroplastic-like, partial
- TrEMBL: J3MV70 — J3MV70_ORYBR; Uncharacterized protein
- STRING: OB08G30010.1 — (Oryza brachyantha)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Oryza sativa: OsIDD6
- Panicum virgatum: Pavir.6KG404500.3.p, Pavir.6KG404500.1.p, Pavir.6NG358100.2.p, Pavir.6NG358100.1.p, Pavir.6KG404500.4.p, Pavir.6KG404500.2.p, Pavir.6NG358100.3.p
- Setaria italica: Seita.6G247000.1.p
- Setaria viridis: Sevir.6G252400.1.p
- Zea mays: GRMZM2G179677_P04, GRMZM2G179677_P03, GRMZM2G179677_P02, GRMZM2G179677_P05, GRMZM2G179677_P01, GRMZM2G179677_P06
Sequences
CDS Sequence:
- >OB08G30010.1|Oryza_brachyantha|C2H2|OB08G30010.1
ATGGCGGCCGCGTCTGCACACTACTTCGGTCTGAGTGAGCCGGCGCAGATGCAGCAGCAGCAGCAGCAGCAGCAGGCTCACCTGCAGAGCAACGCGGCGGCTCCTCCCGCCGCAGCCACGCCGCCGCCCAAGAAGAAGAGGAATCAGCCCGGAAACCCAAATCCTGACGCGGAGGTGATCGCGCTGTCGCCGCACACGCTGCTGGCGACGAACAGGTTCGTGTGCGAGGTGTGCAACAAGGGGTTCCAGCGGGAGCAGAACCTGCAGCTGCACCGGCGAGGGCACAACCTGCCGTGGAAGCTGAAGCAGAAGAACCCCAAGGAGACGCGGCGGCGCGTGTACCTCTGCCCGGAGCCGTCCTGCGTCCACCACGACCCCTCCCGCGCCCTCGGCGACCTCACCGGCATCAAGAAGCACTACTGCCGCAAGCACGGCGAGAAAAAGTGGAAGTGCGACAAGTGCAACAAGCGCTACGCCGTCCAGTCCGACTGGAAGGCTCACTCCAAGACCTGCGGCACCCGCGAGTACCGCTGCGACTGCGGCACCCTCTTCTCCAGGAGGGATAGCTTCATCACTCACCGAGCCTTCTGCGACGCGCTGGCGCAGGAGAGCGGGAGGATGCCGCCCATGGCCGGCACCGCCCTCTACGGCGCCGGCAGCCTTGCCGCCATCGGCCTCGCCGGCATGGCCGCCCCCCAGCTGCAATCCTTCCAAGACCAGACGCCCCACTCGTCTGCCATCACCGGCGGCAACGCGGCAACGCAGTTCGATCACCTCATGGCGCCGTCGTCCGCCGCCTCCCCCGCGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGGGCGCGGGGGAGCGGGAGGAGGCCGCCCATGGCCGGCACCGCCCTCTACGGCGCCGGCAGCCTTGCCGCCATCGGCCTCGCCGGCATGGCCGCCCCCCAGCTGCAATCCTTCCAAGACCAGACGCCCCACTCGTCTGCCATCACCGGCGGCAACGCGGCAACGCAGTTCGATCACCTCATGGCGCCGTCGTCCGCCGCCTCCCCCGCGTTCCGCGCCACGCAGCCGGCATCGTCGGCGTCCTCGCCGTTCTACCTCGGCAGGGGCGCCGACGACGGGCAAACCCACACCTCGTTGCTCCACGGCAAGCCGGGCTTCCACGGCCTGATGCAGCTGCCGGAGCAGCACCAGCCGGCCGGGAACAATGGCCTCCTTAACCTGAGCTACTTCTCCGGCGCGAACGGCGGCGGCCACCAGGACGCGCGCCTCATCTACCCGGAGCAGTTCAACGGCGCCGGGGCCGGGAACGGCCGCCCGGGCAGCGGCGGCCAGCACGGGAACAGCGGCGCCAACACCGACTCGGCGAGCATCTTCTCCGGGAACATGATGGGTGGCGGCTTCTCTTCCCTGTACAGCTCCTCCGACCAGTCCGTCGCACCACCGCAGATGTCGGCGACGGCGCTCCTGCAGAAAGCCGCCCAGATGGGCGCGACGACGAGCAGTGGAGGCGGCGCCGGCAGCGTCAACACCCTGCTCAAAGGGCTCGGAAGCGGCGGCGCTCTGAACGGGAAGGCTGCAGGGTTCATCATGTCCGGGGAGAGCTCGTCGAGGAGCACTTCACAGACGGCGGAGAACGAGAGCCAGCTCCGGGACCTGATGATGAACGCCGGAACGGTGTTCGTCGGCGGCGGCTTCCCCGGAGTGGACGACGGCAAGCTGAGCACGAGGGACTTCCTCGGCATGAACGGCGGCGCGGCGGGGCTTGCACTACGGCATAGCACCGCCGGAATGGGCATGGGCTCACTGGACCAGGAGATGAAGTGGATCAACTGGTGA
Protein Sequence:
- >OB08G30010.1|Oryza_brachyantha|C2H2|OB08G30010.1
MAAASAHYFGLSEPAQMQQQQQQQQAHLQSNAAAPPAAATPPPKKKRNQPGNPNPDAEVIALSPHTLLATNRFVCEVCNKGFQREQNLQLHRRGHNLPWKLKQKNPKETRRRVYLCPEPSCVHHDPSRALGDLTGIKKHYCRKHGEKKWKCDKCNKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESGRMPPMAGTALYGAGSLAAIGLAGMAAPQLQSFQDQTPHSSAITGGNAATQFDHLMAPSSAASPAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRARGSGRRPPMAGTALYGAGSLAAIGLAGMAAPQLQSFQDQTPHSSAITGGNAATQFDHLMAPSSAASPAFRATQPASSASSPFYLGRGADDGQTHTSLLHGKPGFHGLMQLPEQHQPAGNNGLLNLSYFSGANGGGHQDARLIYPEQFNGAGAGNGRPGSGGQHGNSGANTDSASIFSGNMMGGGFSSLYSSSDQSVAPPQMSATALLQKAAQMGATTSSGGGAGSVNTLLKGLGSGGALNGKAAGFIMSGESSSRSTSQTAENESQLRDLMMNAGTVFVGGGFPGVDDGKLSTRDFLGMNGGAAGLALRHSTAGMGMGSLDQEMKWINW