Information report for NNU_012406-RA
Gene Details
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Functional Annotation
- Refseq: XP_010264716.1 — PREDICTED: zinc finger protein JACKDAW
- Refseq: XP_010264717.1 — PREDICTED: zinc finger protein JACKDAW
- TrEMBL: A0A1U8ACW8 — A0A1U8ACW8_NELNU; zinc finger protein JACKDAW
- STRING: XP_010264716.1 — (Nelumbo nucifera)
- GO:0010075 — Biological Process — regulation of meristem growth
- GO:0045604 — Biological Process — regulation of epidermal cell differentiation
- GO:0048364 — Biological Process — root development
- GO:0051302 — Biological Process — regulation of cell division
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0042803 — Molecular Function — protein homodimerization activity
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Juglans regia: WALNUT_00017194-RA, WALNUT_00017188-RA
- Manihot esculenta: Manes.11G142900.3.p, Manes.11G142900.2.p, Manes.11G142900.1.p, Manes.08G005700.1.p, Manes.04G023700.1.p, Manes.09G069600.1.p
- Populus trichocarpa: Potri.006G129300.1, Potri.016G088500.1
- Vitis vinifera: GSVIVT01025658001, GSVIVT01025166001
- Ziziphus jujuba: XP_015866596.1, XP_015865683.1, XP_015865682.1
Sequences
CDS Sequence:
- >NNU_012406-RA|Nelumbo_nucifera|C2H2|NNU_012406-RA
ATGCAAATGATGTCCGGGGATGGGCTTTCAATTCCCTCTGCAATCAGAGGGTTTCCTCAGCCACCGATTCCAAACCCTAACCCTAATCCTAATGGTACTACCGTGGTCAAGAAGAAACGAAATCTACCTGGAACACCAGATCCAGATGCGGAGGTCATAGCTCTATCTCCAAAGACTCTCATGGCAACCAACCGGTTCGTCTGCGAAATCTGCAACAAGGGGTTCCAGAGAGACCAGAACCTTCAGCTGCATCGACGAGGGCACAACTTGCCATGGAAGCTTCGGCAGAGAACAAGCAAGGAGATCCGGAAGAGGGTTTATATCTGCCCCGAAAAGACCTGTGTTCACCACGATCCGTCCAGGGCCCTCGGAGATCTTACGGGAATAAAGAAGCATTTCAGCCGAAAGCATGGCGAGAAGAAGTGGAAGTGCGAGAAATGTTCTAAGAAATACGCAGTTCAGTCCGACTGGAAAGCTCACACCAAGACTTGTGGGACAAGAGAGTATAAATGCGACTGCGGAACACTCTTTTCCAGGAAGGACAGCTTCATCACCCACAGAGCCTTTTGTGATGCCTTGGCAGAAGAGAGTGCGAGACTCACTTCGGTTGCAGCCACCAACCTCAACTTCAGAACGGAATCCATCAACAACGCCACGTCCACCCTGCCGCATGGGTTCGGAAGCCGAGGAGGACCAGACGCCATTGCTGGTATCCCTTCACTATGCCCAATTTTCAGGCCAGAATTTGCCGGCCCCGAGGCTGCCAATTCCCTCGATGCAAACCGGCAGAAGCCAAGGTTGTCGCTGTGGCTAGATCGGGCCAATTCTCATATGAACCCCATCGATATGGCAGCTAATAATTCTAATGCTTTCTTGACATCGAGTTCCACCGCGGGTTTGCCTGAATTCGTGCAAATGGCATCGACCAATCTCTTCAACTCCTCCACTTCTTTGGTTGATTACGGAGGATGCGTTCAGCCACAGTGGCTTGATAGGTGCTCCGGAGCATCGACAGGTGCCAACCTATCTTTATCAACCTCCCCGCGTGGATTAAAGGAGGAGAATGGAAACAAAGGCCAGTTGGTGGAAAGCTTAGCTTCATTGTATTCCAACAGCCAAAACCAGCAAGCAAACTCAGCACACATGTCAGCGACCGCACTTCTACAGAAAGCAGCTCAAATGGGATCTACTAGGAGCAACCCTTCACTGCTCAGTAGCTTTGGAGTGGGGAACTCTTCTTCCTCAGATACCACAAGCTTCAATCCTCACACTCAGACTAGGAATGACTTCCATCAGTTACTCCGGCAAGCGAAGCAACCGGAGAACCTTAATGAGCTTATGAATTCGATATCAACGGCAACCGCCACCACTGGTGTTGGTGGTGGAATGATGGGTGGGTTGAATTTAAGCTCATTAACTGATACAGCAAGCAACCTCGACCGCCTGATGATTGCACATAGTGGAAAACAAGGCCAACCGTTTCCATTAAAGCTCCACCCGACTGCAAACGAAGTCGAACAAAGTCTAACAAGAGATTTCCTAGGCGTAGGAGGAGACTCTGGCAGGCCATTCTTACAGCATGAACTAGCAGCGAAATTTGCTTCGATTGGTTCAGCCATGAATTTGAGCCAATACAATGGCACCCACTAA
Protein Sequence:
- >NNU_012406-RA|Nelumbo_nucifera|C2H2|NNU_012406-RA
MQMMSGDGLSIPSAIRGFPQPPIPNPNPNPNGTTVVKKKRNLPGTPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEIRKRVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVAATNLNFRTESINNATSTLPHGFGSRGGPDAIAGIPSLCPIFRPEFAGPEAANSLDANRQKPRLSLWLDRANSHMNPIDMAANNSNAFLTSSSTAGLPEFVQMASTNLFNSSTSLVDYGGCVQPQWLDRCSGASTGANLSLSTSPRGLKEENGNKGQLVESLASLYSNSQNQQANSAHMSATALLQKAAQMGSTRSNPSLLSSFGVGNSSSSDTTSFNPHTQTRNDFHQLLRQAKQPENLNELMNSISTATATTGVGGGMMGGLNLSSLTDTASNLDRLMIAHSGKQGQPFPLKLHPTANEVEQSLTRDFLGVGGDSGRPFLQHELAAKFASIGSAMNLSQYNGTH