Information report for NNU_005829-RA
Gene Details
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Functional Annotation
- Refseq: XP_010253924.1 — PREDICTED: probable lysine-specific demethylase ELF6 isoform X1
- Swissprot: Q6BDA0 — ELF6_ARATH; Probable lysine-specific demethylase ELF6
- TrEMBL: A0A1U7ZJ06 — A0A1U7ZJ06_NELNU; probable lysine-specific demethylase ELF6 isoform X1
- STRING: XP_010253924.1 — (Nelumbo nucifera)
- GO:0009741 — Biological Process — response to brassinosteroid
- GO:0009826 — Biological Process — unidimensional cell growth
- GO:0033169 — Biological Process — histone H3-K9 demethylation
- GO:0048577 — Biological Process — negative regulation of short-day photoperiodism, flowering
- GO:0048579 — Biological Process — negative regulation of long-day photoperiodism, flowering
- GO:0005634 — Cellular Component — nucleus
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: Achn204031
- Beta vulgaris: Bv6_156070_styp.t1, BVRB_6g156070
- Capsicum annuum: T459_14455
- Cicer arietinum: XP_004496256.1
- Juglans regia: WALNUT_00007284-RA, Jr07_34620
- Nicotiana benthamiana: Niben101Scf18328g00009.1
- Nicotiana tabacum: XP_016462121.1
- Populus trichocarpa: Potri.010G224700.1, POPTR_010G224700v3, Potri.008G037800.1, POPTR_008G037800v3
- Prunus persica: Prupe.2G211400.1.p, PRUPE_2G211400
- Sesamum indicum: XP_011084321.1, SIN_1004762
Sequences
CDS Sequence:
- >NNU_005829-RA|Nelumbo_nucifera|C2H2|NNU_005829-RA
ATGGGTGATGTAAAGATACCTAATTGGTTAAAAGGGTTGCCTTTGGCACCCGAATATCACCCAACGGATACCGAATTCGCAGACCCAATTGCTTATATATCAAAAATCGAGAAGGAAGCGAGTGCCTTTGGGATTTGCAAAATTATCCCTCCATTGCCAAAACCTTCAAAGAGATATGTTATTGCCAACTTAAATAGGTCACTTTCGAGGTGCCCGGAACTGGCTTCTGATGTAAATTCCTCAGCTGTTTGTGCTTCCTCTCAACTGGGTGGTGGGGATAAAGGGAATGATGGGGAGCTTCGGGCGGTGTTCACGACAAGGCATCAAGAATTAGGCCAGAGTATGAAAAAAACCAAGGGACCCCCTCAGGTTCGGCAATCAGCAATGCAAAGGCAAGTTTGGCAAAGTGGGGAGGTGTATACACTGGAGCAGTTCGAGTCTAAGTCCAAGGCTTTTGCTCGGAATATTTTAGGCATGTGTAAGGAAGTTTCTCCACTCCTTATAGAGGCATTATTTTGGAAGGCAGCTTCTGAAAAGCCTATATATGTGGAATATGCAAATGATGTGCCTGGGTCTGGTTTTGGAGAACCCAAGGAACCATTTCGGTACTTCCACAAGCGGAGCAAGAAGAGAAAGTTTGATAAGAAGGTTCAGGGAATCCCTAATTGTGAGAACCAGGTAGTGGATAATATAAGCAATTCTAACAAGGATATTGAGAAAGACACCTTCGTGAATAATGATTCAATTCCATCTTCAGAGAGTTCTAAGCCATCTAGCTCGTCAAATTTGTCATCAGATGAGGGTTCAAAGTTTTTTAGGCAGAAGAGTCTAAGTGCTAGTTGTGACAGGGAAGGTACCGCTGGTTGGAAACTCTCAAACAGCCCTTGGAACTTACAAGTTATTGCACGCTCACCTGGCTCACTTACACGCTTTATGCCAGATGATATCCCGGGAGTTACTTCTCCCATGGTTTATATAGGCATGTTGTTCAGCTGGTTTGCCTGGCATGTGGAAGATCACGAGCTTCACAGCTTAAATTTTCTCCATACTGGTTCTCCAAAGACTTGGTATGCAGTTCCTGGAGATTATGCCTTTACTTTTGAGGAAGTTGTTCGTGCCCAAGGCTATGGGGGAAATCTTGATCGGCTAGCTGCACTTGCGCTTTTAGGAGAGAAGACAACTCTATTGTCACCTGAAGTGGTTGTTTCATCAGGAATTCCCTGTTGCAGGGTAGTACAGCATCCTGGTGAATTTGTTGTGACTTTTCCAAGGGCTTACCATGTTGGATTCAGCCATGGTTTTAATTGCGGGGAAGCTGCTAACTTTGGAACCCCACAGTGGCTCAAGGTAGCCAAAGAAGCTGCAGTTCGTAGGGCTGCTATGAATTATCTTCCTATGCTTTCCCATCAGCAGCTGCTGTACTTGCTGACCATGTCATTTGTTTCAAGAGTACCTAGATCCTTACTCCCAGGAGCACGAAGTTCTCGACTGAGAGATCGCCAGAAGGAAGAAAGAGAACTACTAGTAAAGAAAGCATTTATAGATGATATGTTGACAGAAAACAATCTATTATCGAATCTTCTTGGAAAAGGATCAACTTATCATGCAGTATTGTGGGATCCTGAATCACTGCCTTCCCCTTGTAAAGATTCTCAGTCATTTCCTTTGCCCACTTTTCCAGATGCATCTAGCTTGTTAATTGATGAGAGAAACATGGAAACCTGCAACAATGAAAAGAAAATTTTCCATCCAGAGAATGTGTTACATGATGGGCTCGATAGTGTTGGTACTACATCAAGCAGAAAATTATTGCCTATTGGTACCAATAATGACGATTGTTGTGATAGTGTGGTTGACCAAACAAAGTTAAATATGGACACTTCCGACAACTTGTATGCGGAAGATGCTGATTTGCCATATGGTTTACATGTTGACTCAGAAACATTGGCATGTGTGGCTTGTGGGATTCTTGGTTTTCCATTTATGTCTGTAGTACAACCATCTGAGAAAGCATTTGAGAAATTCTTTCATGCAGATTGCCAATCGTCTCAAGAAGGGACAACTCTAAACTCTGAAAAGTCTTTTTCTTCTTCATACATGGATGTCAGTTGCAATGGTTCTGCTTCAGATTTCATGGCTGGTCCATCTATTTCAAAATCTGGGAGTCTGCAGATGTTTGCATCTGGTAAGGTTAGCAAGCTGTGGAACACATCTAATAAATTTCTAAGACCACGGGTCTTCTGTTTGGAGCACACACTAGAAATTAAGAAGCTATTGCTGTCAAAAGGTGGTGTAAATGTACTCATAATTTGCCATTCAGACTATCCCAAGATAAAGGCACATGCTACAGCCATAGCAGATGAAATTGGTGTTCCTTTCAACTACAAAGACATTCCACTGGAGCATGCATCTCAAGAAGATCTGAACTTAATTAATATTTCAATTGATGATGGACAGGAAGAATGTGGAGAAGACTGGACCTCAAAAATCGGACTCAACTTGCGATACTGTGTCAAGCTCAGGAAGGCATCTCTCTCAAATCAGGAGCAGCATGCTCGTGCCTTGGGTGGGTTGTTCTCTGATATTATTCCTGGCTCAAGACTCTCGGGGCTGAAGTGGCAGTGCAGAAGATCCCGAACACATCACAAAGGAATTGGACCAAATCAAGCAAAATCCTGTGAGAACGTACAAGTTGAGAAAAGCGATGCTGCCGATGCATTGGTAGGAAAACCAGATGACAGCAAGGTTGCCACAGAAAATAAAATCATTCAATATTCAAGAAGAAGCTCCAATGGTAAAACAGGTAATCCTGTAGGAGCTAATCGGCCTTGTGGCTACCTTAGAAAGCCCCTGTTGGGGGAAGTTGCAATGGTTAATAATGAAGACTCAGATGTTAACAGCAAAAAATCTTCTGAAGATAATTCTTGTGGCGCTGAGAAGCAAGAAAATGATCTTGGGCAGTCATCTATTTTTGTCATTCATAATGACAACATACATCATAAAATCCAGACAACTGAAGAAACTAGAAAAATGAGTGTGATTTCTGATCCATCCCAGTCTGCAGGTTTGCATGCCATTGCTGTTCCAGCATTTGGAACTGCTGAAGCACAGGCAGATAAAACCGTGAAGACTGACATTGAGGGCAAGGCTTGTAATTTGGTTACACAGGATGGTTCCGAAGAGCATGACATGCAATTCACCAATGAAATCAACAAGATGAATGAGTTCTCTACTCATCCAAATTTCCCACGTTCTCTGTCTGTTGCTATCTCAACTGATAGAATTTATGAAACAAATATGGATGACGGAATTCTGGGGGAAACAAATGAGAAGGCTGAGTCTCATAATTATTCAACACTGGATAAATCAGAAATGCAACAAGTTATCCAGACTGTAAATGGGACTAACAAAGATCCTGAGGGTTATAATGATGGCAACTCAACAACAGATCAGTGTATTCATCCCATCCCAATATTAGAATCTTCTGGAGTTCCAGAAGAGATACAAGATACTGAGGGGCTATGCATTGGTCCTGATGATCATTCTTCACACAACAGAATGGAGTTGGAAGCGGCCGACTCCAGTATTTTGGACACCAAGCTGAATAAAAAAGTGGGAAACAAAAGAAGAAGAGAAGTAGAGAAGATTACAGGTCAGTGCCTTGAGGGCTTTATTAGAAGCCCATGTGAGGGGCTGAGGCCAAGGGCAGGCAGAGGTGCAACATCTGGGCCTGGAACTCGTATCAATACAAGAGTGGAAAAGGCAGTGGTTAAGAAGATAAAGAGACGACTGGACGGTGATACTGCTTCTAAACAAAATAAAGATGAAACTAACAGGGTTCACAAATGCGACTTTGAAGGCTGCCATATGAGTTTCAAGGTAAAAGCAGATCTCCTTGTGCACAAGAGAAATCGGTGCCCACACCAGGGCTGTGGCAAACAGTTCAGCTCCCACAAGTATGCCATGCTTCATCAGAGGGTTCATGTTGAAGACAGACCTCTCAAGTGCCCATGGAAGGGTTGTAAGATGTCATTTAAGTGGGCTTGGGCAAGGACAGAGCATTTACGGGTACATACAGGGGAGCGACCTTACAAGTGCAAGGTTGCGGGATGTGGCCTAACATTCCGGTTCGTGTCAGACTTCAGCCGGCACAGACGGAAAACTGGGCATTATATGAACTTGCCCACGTAG
Protein Sequence:
- >NNU_005829-RA|Nelumbo_nucifera|C2H2|NNU_005829-RA
MGDVKIPNWLKGLPLAPEYHPTDTEFADPIAYISKIEKEASAFGICKIIPPLPKPSKRYVIANLNRSLSRCPELASDVNSSAVCASSQLGGGDKGNDGELRAVFTTRHQELGQSMKKTKGPPQVRQSAMQRQVWQSGEVYTLEQFESKSKAFARNILGMCKEVSPLLIEALFWKAASEKPIYVEYANDVPGSGFGEPKEPFRYFHKRSKKRKFDKKVQGIPNCENQVVDNISNSNKDIEKDTFVNNDSIPSSESSKPSSSSNLSSDEGSKFFRQKSLSASCDREGTAGWKLSNSPWNLQVIARSPGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSLNFLHTGSPKTWYAVPGDYAFTFEEVVRAQGYGGNLDRLAALALLGEKTTLLSPEVVVSSGIPCCRVVQHPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLKVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFVSRVPRSLLPGARSSRLRDRQKEERELLVKKAFIDDMLTENNLLSNLLGKGSTYHAVLWDPESLPSPCKDSQSFPLPTFPDASSLLIDERNMETCNNEKKIFHPENVLHDGLDSVGTTSSRKLLPIGTNNDDCCDSVVDQTKLNMDTSDNLYAEDADLPYGLHVDSETLACVACGILGFPFMSVVQPSEKAFEKFFHADCQSSQEGTTLNSEKSFSSSYMDVSCNGSASDFMAGPSISKSGSLQMFASGKVSKLWNTSNKFLRPRVFCLEHTLEIKKLLLSKGGVNVLIICHSDYPKIKAHATAIADEIGVPFNYKDIPLEHASQEDLNLINISIDDGQEECGEDWTSKIGLNLRYCVKLRKASLSNQEQHARALGGLFSDIIPGSRLSGLKWQCRRSRTHHKGIGPNQAKSCENVQVEKSDAADALVGKPDDSKVATENKIIQYSRRSSNGKTGNPVGANRPCGYLRKPLLGEVAMVNNEDSDVNSKKSSEDNSCGAEKQENDLGQSSIFVIHNDNIHHKIQTTEETRKMSVISDPSQSAGLHAIAVPAFGTAEAQADKTVKTDIEGKACNLVTQDGSEEHDMQFTNEINKMNEFSTHPNFPRSLSVAISTDRIYETNMDDGILGETNEKAESHNYSTLDKSEMQQVIQTVNGTNKDPEGYNDGNSTTDQCIHPIPILESSGVPEEIQDTEGLCIGPDDHSSHNRMELEAADSSILDTKLNKKVGNKRRREVEKITGQCLEGFIRSPCEGLRPRAGRGATSGPGTRINTRVEKAVVKKIKRRLDGDTASKQNKDETNRVHKCDFEGCHMSFKVKADLLVHKRNRCPHQGCGKQFSSHKYAMLHQRVHVEDRPLKCPWKGCKMSFKWAWARTEHLRVHTGERPYKCKVAGCGLTFRFVSDFSRHRRKTGHYMNLPT