Information report for NNU_005302-RA
Gene Details
|
|
Functional Annotation
- Refseq: XP_010252897.1 — PREDICTED: uncharacterized protein LOC104594341
- TrEMBL: A0A1U7ZGL8 — A0A1U7ZGL8_NELNU; uncharacterized protein LOC104594341
- STRING: XP_010252897.1 — (Nelumbo nucifera)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: Achn079091, Achn069341, Achn225961
- Juglans regia: WALNUT_00002144-RA, WALNUT_00003049-RA
- Malus domestica: MDP0000172931, MDP0000271744
- Nicotiana benthamiana: Niben101Scf09582g01011.1
- Nicotiana tabacum: XP_016444536.1, XP_016481644.1
- Petunia inflata: Peinf101Scf00145g19003.1
- Populus trichocarpa: Potri.001G224600.1
- Prunus mume: XP_008218252.1
- Prunus persica: Prupe.6G035400.1.p
- Pyrus bretschneideri: Pbr041329.1
- Sesamum indicum: XP_011090475.1, XP_011095646.1
- Vitis vinifera: GSVIVT01014844001
Sequences
CDS Sequence:
- >NNU_005302-RA|Nelumbo_nucifera|C2H2|NNU_005302-RA
ATGGATGATGAAAATAATCATAAGAGCTGGAATCGGATTCGGAACCAACGCGTATTGCTCCAAGAGCAAGAAGAATCATCAGGGCCAGGCTCATCATCAATGGAGAAATCGGGTTTTGAGGATTCTGAAGAACTAACCAAGAAATCCGGCCTACGGATCAAGCTAAAAGTTGGAACCAGCAACCAATACAGCGGAGAGGAAAGCGACCACGATCAGAGCTCAGTAAAGGAAAAGCGAGTTTGTAAGGTCTGCAACAAATCTTTCAGCTCGGGACGAGCTTTGGGAGGTCATATGAGAGTTCATGCTCAGGAGCAGGACGGTGGTTTTGGTGTTGGTCCTGTCACAAAGAACCTCCACAACTCCAAGCAGCTCAAGGATCATCAGCTCCTCCATCGATCAAACGTCAACTCTAACAGTACAACCTGTTTGCTTTGTGGGAAGAGCTTCCCCTCCATGAAATCCTTGTTTGGTCACATGAGATGCCACCCTGACAGAGAATGGAGAGGAATTCGTCCTCCCCCATCAGCGACAATCAAGAACAGCTCGTCGTCGACGGTGTCCGATGCCGTGGCTCCTCCAAAGGTGGACGATCAGATAGATTCTGCTGCTACTACTACCATCACAACTACTGAAACCGAATATTTAACTCTTGATCTTGCACAGTCTCTTCGGAGCTGGTCCCTGACTGCAAAGAGAGGCCGGAAAAGTCTGGTTCAGACTAGAAGCATCGATCCTCCCCTATCCGATGCTGCTTATGATCTCTTAGCCCTATCCAACAAGCAAAGCGGCCATGGAATAATCGAGGCTCTAGATAGAGATTCTTCGTCAAAGAAGAAGGTCAAGACAGAAGATGGGAACCGTGTTACTAAAAATTTGAGTTTAAAGACCTTAAAGCAGCAAATTAAAGAAGAACCGCAGCTGGAAGAGAGAGATTTGTTATCTAAGAAGCTGAAACTTAATGAAAGAGGACTACCCATGCGCAGAAAGGACGAGCCCGAGAATGGTGTTGGTCCTGACTCGTTGAGCGTGAACTCCAGTTGGGAATATAGAGATGGGTTTGGGGAAGAATCAAACGACAACTGTGAGGATGAAGAGGAGGAGGAGGAGAAACACCAGTTCACTCACATATCAGGAGCCCACAGGCATAAGCATAAGAAGAAGAAGATGAAGACAATAAAGCTTAAGGACTTGGAAACTGTTCAGAGTGTCAGTCCGATGCCAGTGGTATATTGTGGCAGCAGGTACAAGTGCACCACCTGCAATAAATCCTTCTCTACTCACCAAGCTCTGGGTGGCCACAGATCAAGCCACAACAAAGGCAACAAGTTTCTGCTCGTTGCAGACACCGAAGACTACTCTGAATTTGCAGCAGATGCCTCGGCGGCCGAGGAAGAGCAGCAATTACTTGGGGCTGCCTTGAGTCAGACTCAAGTCGACAGCTCACCACCACCAACACCACCTGAGATGACTGAGGTGGAGGAGTCAAGGTCGACGGTGATAACCATGCATCAGTGTAAGATATGCAACAAGAAGTTTGCAACAGGTCAGGCTCTTGGAGGGCATAAAAGGTGCCACTGGATAAGCCCAGCCGTTGCAGCTCCTTGCAGCAGCAGCTCGGTGGCATCACCGGAACAAGACAATAAGAAGATGGGTCGTAAGATGTTCGACTTTGACCTCAATGAGCTGCCAGTGGTTGAGGATGAAGAGATTCCCGAGTCGGTCTATGATGGAAATTTTCTAAATGATCACTCGTGTGATTGGGGAAAGAGATGA
Protein Sequence:
- >NNU_005302-RA|Nelumbo_nucifera|C2H2|NNU_005302-RA
MDDENNHKSWNRIRNQRVLLQEQEESSGPGSSSMEKSGFEDSEELTKKSGLRIKLKVGTSNQYSGEESDHDQSSVKEKRVCKVCNKSFSSGRALGGHMRVHAQEQDGGFGVGPVTKNLHNSKQLKDHQLLHRSNVNSNSTTCLLCGKSFPSMKSLFGHMRCHPDREWRGIRPPPSATIKNSSSSTVSDAVAPPKVDDQIDSAATTTITTTETEYLTLDLAQSLRSWSLTAKRGRKSLVQTRSIDPPLSDAAYDLLALSNKQSGHGIIEALDRDSSSKKKVKTEDGNRVTKNLSLKTLKQQIKEEPQLEERDLLSKKLKLNERGLPMRRKDEPENGVGPDSLSVNSSWEYRDGFGEESNDNCEDEEEEEEKHQFTHISGAHRHKHKKKKMKTIKLKDLETVQSVSPMPVVYCGSRYKCTTCNKSFSTHQALGGHRSSHNKGNKFLLVADTEDYSEFAADASAAEEEQQLLGAALSQTQVDSSPPPTPPEMTEVEESRSTVITMHQCKICNKKFATGQALGGHKRCHWISPAVAAPCSSSSVASPEQDNKKMGRKMFDFDLNELPVVEDEEIPESVYDGNFLNDHSCDWGKR