Information report for NNU_004202-RA
Gene Details
|
|
Functional Annotation
- Refseq: XP_010250905.1 — PREDICTED: lysine-specific demethylase JMJ705-like
- TrEMBL: A0A1U7ZHC1 — A0A1U7ZHC1_NELNU; lysine-specific demethylase JMJ705-like
- STRING: XP_010250905.1 — (Nelumbo nucifera)
- GO:0009741 — Biological Process — response to brassinosteroid
- GO:0009826 — Biological Process — unidimensional cell growth
- GO:0010228 — Biological Process — vegetative to reproductive phase transition of meristem
- GO:0033169 — Biological Process — histone H3-K9 demethylation
- GO:0035067 — Biological Process — negative regulation of histone acetylation
- GO:0040010 — Biological Process — positive regulation of growth rate
- GO:0045815 — Biological Process — positive regulation of gene expression, epigenetic
- GO:0048366 — Biological Process — leaf development
- GO:0005634 — Cellular Component — nucleus
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
- GO:0071558 — Molecular Function — histone demethylase activity (H3-K27 specific)
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: Achn113981, CEY00_Acc26800
- Juglans regia: WALNUT_00020075-RA, Jr09_04290, Jr02_01930
- Manihot esculenta: Manes.06G114100.1.p, MANES_06G114100, Manes.14G055900.1.p, MANES_14G055900
- Musa acuminata: Ma11_g08350, Ma06_g01490, Ma10_g03830, GSMUA_Achr11P08770_001
- Sesamum indicum: XP_011072922.1, XP_011072923.1, SIN_1017396
- Ziziphus jujuba: XP_015882347.1
Sequences
CDS Sequence:
- >NNU_004202-RA|Nelumbo_nucifera|C2H2|NNU_004202-RA
ATGAGAGGTTTTAAATGTTCGTCTGACCTTCAATTAATGGCAGTAGTAGCAGCTGCAGAGTCGCCTCCAGAGATCTTTCCATGGCTCAAAAATCTACCATTAGCTCCGGAATACCATCCTTCTGTAGCAGAATTCCAGGACCCTATCGCTTACATTCTCAAGATCGAGAAAGAGGCGTCCAAGTTTGGCATCTGCAAGATCGTTCCTCCTCTCCCTCCACTTCCCAAGAAAACCGTAATTGCCAACATCAACCGTTCCCTCGCCGCTCGCAACAACAACTCGAACTCGAAATCCCTACCCGCATTCACCACCAGGCAGCAACAGGTCGGATTCTGCCCTCGGAAGTCTCGACCGGTTCAGAAACCCGTGTGGCAGAGTGGTGAGACCTACACTCTACAGGAATTCGAGGCGAAAGCGAAGCAGTTCGAGAAAACCCATCTGAAGAAAACTGGGAAAAAGGCTATCTCAGCGTTAGAAATCGAAACCCTTTTCTGGAAGGCGAGCATGGATAAACCCTTTTCGGTGGAGTACGCCAATGACATGCCTGGCTCAGCTTTTGAGCCGGTTAATGGTAAGAAATGGCAGGAAGCAGGGGAAGCGGGTAGCGTTGGAGAGACAGCGTGGAACATGCGAGGTGTTTCGCGGGCAAAAGGTTCGCTGCTAAGGTTTATGAAGGAGGAAATACCTGGTGTGACTTCTCCCATGGTTTATATAGGAATGCTGTTCAGTTGGTTTGCTTGGCACGTGGAAGATCATGACTTGCACAGTTTGAATTATTTACATATGGGGGCGGGGAAGACGTGGTATGGAGTCCCAAGGGATGCAGCTTTTGCATTCGAGGAGGTTGTCAGAGTGCACGGGTATGGAGAGGAGGTCAATCCTCTTGTTACTTTTGCTATTCTTGGTGAGAAGACCACAGTGATGTCACCTGAAGTACTTATCAGCACAGGGATTCCTTGCTGCAGATTGGTGCAAAATGCGGGGGAGTTTGTTGTCACTTTCCCAAGAGCCTACCATTCAGGGTTCAGCCATGGATTTAATTGTGGAGAAGCAGCAAATATTGCCACTCCTGAATGGTTGAGGGTTGCAAAAGAAGCTGCAATCCGCAGGGCTTCAATCAATTATCCTCCCATGGTGTCTCATTTTCAGTTACTCTATTCTCTTGCACTAGCATTATGTTCAAGGATACCTATGAGCATTAGTACTGAACCACGGAGCTCTAGACTAAAAGATAAGAGGAGAGGTGAAGGAGAAACAATGGTCAAAGAGCTATTTGTGCAAAACGTTGTACAGAACAATGACCTTATTCACGTTCTTCTCAAAAAAGGATCTTCATGCATACTTCTTCCACATAATTCTTTGGATCTATCTATATGTTCAAATTTACGTGTTGGTTCTCAGAGAAAGGTAAACCCCAGGTTATCACTTGGTTTACACAGTCCCAAAGAAGAGATGGAAGCTTCAAAAATTTTACTTTCAGATGATATGGTGCTAGACAGGAATACACATCTAAGGAATTTGAGTGGATTCTCTTCAGTGAAAAGAAAAACTTCATCTGTGTATGAAAGGAAAAGTGTTCCCACATTATGTGGAGCTGATTATTTTTGCACTTCTACTACGGAAATGCATAACTTACAGACTGAAAGAGTGTATAATGCTGGTGATGGGTTATTAGATCAGGGACTGTTTTCATGTGTCGTGTGTGGGATATTGAGCTTTGCATGTACAGCTATCATTCAACCTAGTGAAGCAGCTGCTCGATATCTTGTTTCAGCTGATTGCAGCTTCTTTAATGATTGGATTGTTGGTTCTGGAGTAGCTACTGACAGATATACTGTTTTAGATGGAGATGCAGGTACAGCTAAGCTGAATTCCTGTTCAGGAATGGAGAAATGTGTTAGGGATGGTCTTTATGATGTCCCAGTCCAATCTGGTGATTACCAATTCCAGGTGGCAGGTCAAAGCGTTGAAGTTACTTCAGATACCAAAACAAAGACGGGTATTTCCTCCCTTGATTTATTAGCCTTCGCTTACGGAAATTCATCAGATTCAGAGGAGGATCAGGATAAACCTGAGTTGTCTGTGTTTTCTGATGAAGATGATTTGAAAGACTCTTCATCACAATGTAGATCTACACATTCAGTTCTTTCATCTGAACACACATCCTTGTGCAATAGTTCTAAGTTGTCTTTAGTGCATGCTTCAACCCATAAAGATGGAGCACCCAGCACTCTTTCTTGCCCTTCATCAACAGTGAGTTATGCAAGTGAAGTTTCTGTACAAGTTTATGCTTCAGACAGCACTCCTGGACATCCAAGTACTAATTTGAAAAATCAGCATAAAAAAAATTTTGATACCTCACTTAAGAGTGATACAAGGAGCTTAGTAACTTTGGAATCAAATGATTTAGACGACACATACAGGGATCCACTGGTAGTTTCTAGGAGGGTGGCAAGTAAATTTACTGAAGTCCATCATTGTGATGGTAAGATGGATAATATAGAATCTGAAAGAATGAAGTCAAATGATGCTGAGACATCAGTAAAGAGCAAAGCCATTTCACTCATGCAGAGAACTGATAATGATTCTTCTCGGTTGCATATATTTTGCCTTGAACATGCTGTGGAGGTTGAAAAGCAACTTAATCCAATAGGAGGAGTGCATGTGTTACTTCTGTGCCATCCGGAGTATCTGAAGATAGAAGCCGAAGCAAAATCATTGGCAGAAGAATTGGGAATTGATTATCTGTGGAAAGACGTTCCAGTCAGGGAGGCCACTGAAGAAGATCAACAGAGAATCCAATCAGCTCTGGATGATGATGAAGTGATACCCAGTAATGGGGACTGGGCTGTAAAGCTTGGAATCAATCTCTATTACAGTGCCACCATCAGTCGCTCGCCTCTCTATAGCAAGCAGATGCCATACAATTCGGTCATATACAAGGCATTTGGCCGGAGTTCGCCAGACATCTCCCCAACAAGATCTAAGGATTCTGGGAAGAGGCCTGGCAAGCAGAAGAAGATTGTTGTTGCAGGAAGATGGTGTGGGAAGGTTTGGATGTCAAACCAGGTTCATCCATATTTAGCTCAAGCAGATGAATCCGAAGAACAAGAACTTACAAGAAGCTTCCCAATTCAAACAATGCCAAATAGGAAGCCTGACAGGAAAGTAGACATTAGCCAACAGGAACAACCAGTGCTTCCAGAGAAGATACCATTGCGTGGAACGATGACCACTGTAGCTAAAAATCCTGGACGGAAGAGGAAAAGATCTGAGAAGGGGATGATCAAGAAACAGAATTGTCTGCAAAGAGATAATCCCATCACATCTATAGATGACTCACCAGAGCTGGATACACCTTCCCCTTGTGGTAGGCTTATCAGAAGTGAACAAATGAAACATGAGACACCACCACATCATAATGATTGTGAGGACATCAGAGAGGAAGATTCTTGTGAGAAGGATGACATTGAAGGTGGACTGAGCATGCGTCTAAGAAAAAGACCACAAAAAAAGCCTTATGAAGAAGTGAAAGTCAAACCCATGCATGAGAAGCAAACGAAGAAAAAGTCCAAGAAAACTTCAAGCAGCAATGAAGTAGATACCAAGGATGAGGAAGCAGACTACCTATGTAATATAGAGGGGTGCTCTTGTAAAAAGGATGGCATTGAAGGTGGACTGAGCATGCGTCTAAGGAAAAGACCACAAAAAAAGCCTTGTGAAGTGAAAGTCAAACCCATGAATGAGAAGCAAATGAAGAAAAAAGGCAAGGAAACTTCAAGTAGCAATGAAGTAGATACCAAGGATGAGGAAGCAGAATACCAATGTGATATAGAAGGGTGCTCTATGGGGTTTAGCTCAAAGCAGGAGCTGGTGTTGCACAAGCGTAACATCTGCTCAGTGAAGGGTTGTGGAAAGAAATTCTTCTCCCACAAGTATCTAGTGCAGCACAGGCGTGTCCACATGGATGACCGCCCCCTAAAATGCCCATGGAAGGGTTGCAAGATGACATTCAAGTGGGCATGGGCAAGGACTGAGCACATAAGGGTGCACACTGGTGCCCGGCCCTATGTGTGTCGCGAGCCAGGTTGTGGTCAAACATTCCGATTTGTGTCTGATTTTAGCCGTCACAAGCGGAAGACAGGCCACTCAGTGAAGAAAGGTAAAGGATAG
Protein Sequence:
- >NNU_004202-RA|Nelumbo_nucifera|C2H2|NNU_004202-RA
MRGFKCSSDLQLMAVVAAAESPPEIFPWLKNLPLAPEYHPSVAEFQDPIAYILKIEKEASKFGICKIVPPLPPLPKKTVIANINRSLAARNNNSNSKSLPAFTTRQQQVGFCPRKSRPVQKPVWQSGETYTLQEFEAKAKQFEKTHLKKTGKKAISALEIETLFWKASMDKPFSVEYANDMPGSAFEPVNGKKWQEAGEAGSVGETAWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYIGMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAFAFEEVVRVHGYGEEVNPLVTFAILGEKTTVMSPEVLISTGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNCGEAANIATPEWLRVAKEAAIRRASINYPPMVSHFQLLYSLALALCSRIPMSISTEPRSSRLKDKRRGEGETMVKELFVQNVVQNNDLIHVLLKKGSSCILLPHNSLDLSICSNLRVGSQRKVNPRLSLGLHSPKEEMEASKILLSDDMVLDRNTHLRNLSGFSSVKRKTSSVYERKSVPTLCGADYFCTSTTEMHNLQTERVYNAGDGLLDQGLFSCVVCGILSFACTAIIQPSEAAARYLVSADCSFFNDWIVGSGVATDRYTVLDGDAGTAKLNSCSGMEKCVRDGLYDVPVQSGDYQFQVAGQSVEVTSDTKTKTGISSLDLLAFAYGNSSDSEEDQDKPELSVFSDEDDLKDSSSQCRSTHSVLSSEHTSLCNSSKLSLVHASTHKDGAPSTLSCPSSTVSYASEVSVQVYASDSTPGHPSTNLKNQHKKNFDTSLKSDTRSLVTLESNDLDDTYRDPLVVSRRVASKFTEVHHCDGKMDNIESERMKSNDAETSVKSKAISLMQRTDNDSSRLHIFCLEHAVEVEKQLNPIGGVHVLLLCHPEYLKIEAEAKSLAEELGIDYLWKDVPVREATEEDQQRIQSALDDDEVIPSNGDWAVKLGINLYYSATISRSPLYSKQMPYNSVIYKAFGRSSPDISPTRSKDSGKRPGKQKKIVVAGRWCGKVWMSNQVHPYLAQADESEEQELTRSFPIQTMPNRKPDRKVDISQQEQPVLPEKIPLRGTMTTVAKNPGRKRKRSEKGMIKKQNCLQRDNPITSIDDSPELDTPSPCGRLIRSEQMKHETPPHHNDCEDIREEDSCEKDDIEGGLSMRLRKRPQKKPYEEVKVKPMHEKQTKKKSKKTSSSNEVDTKDEEADYLCNIEGCSCKKDGIEGGLSMRLRKRPQKKPCEVKVKPMNEKQMKKKGKETSSSNEVDTKDEEAEYQCDIEGCSMGFSSKQELVLHKRNICSVKGCGKKFFSHKYLVQHRRVHMDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCREPGCGQTFRFVSDFSRHKRKTGHSVKKGKG