Information report for NNU_002974-RA
Gene Details
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Functional Annotation
- Refseq: XP_010248780.1 — PREDICTED: lysine-specific demethylase REF6 isoform X2
- TrEMBL: A0A1U7Z660 — A0A1U7Z660_NELNU; lysine-specific demethylase REF6 isoform X2
- STRING: XP_010248779.1 — (Nelumbo nucifera)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: Achn113981, CEY00_Acc26800, CEY00_Acc18068, Achn375731
- Juglans regia: WALNUT_00020075-RA
- Manihot esculenta: Manes.14G055900.1.p, MANES_14G055900
- Musa acuminata: Ma11_g08350, Ma06_g01490, Ma10_g03830, GSMUA_Achr11P08770_001
- Nicotiana attenuata: A4A49_14224
- Nicotiana benthamiana: Niben101Scf02853g02002.1
- Nicotiana tabacum: XP_016435657.1, XP_016435656.1, XP_016468899.1
Sequences
CDS Sequence:
- >NNU_002974-RA|Nelumbo_nucifera|C2H2|NNU_002974-RA
ATGGCAGCAGTATCGGCAGCAGAGTCTCCTCCAGAGATCTTTCCGTGGCTCAAAACCCTACCTTTAGCTCCCGAATACCATCCTACCGTTGCAGAATTCCAGGACCCTATCGCGTACATTCTCAAGATCGAGAAAGAAGCGTCCAAGTTTGGCATCTGTAAGATCGTTCCTCCGCTTCCACCACCGCCGAAGAAAACCGCAATTGCCAACCTCAACCGCTCCCTCGCTGCTCGAAGCCCTAACTCCAACCCGAAATCACCACCTACATTCACCACCAGGCAGCAGCAGATCGGGTTCTGTCCCCGGAAGTCTCGACCCGTTCAGAAACCCGTGTGGCAGAGTGGAGAGACCTACACTCTTCAGGAATTTGAAGCCAAAGCCAAACAGTTCGAGAAGACCCATCTGAGGAAAACTGGGAAGAAGGCGCTCTCACCGTTGGAAATCGAAACCCTTTTTTGGAAGGCGAGTGTGGACAAACCCTTTTCGGTGGAGTATGCCAATGACATGCCTGGCTCAGCCTTTGTGCCGGTTAATGGTAAGAAATGGAGGGAATCAGGGGAAGCCACTACAGTTGGAGATACAGCGTGGAATATGCGAGGTGTTTCGAGGGCTAAAGGTTCATTGTTACGGTTTATGAAGGAGGAAATACCTGGTGTGACTTCGCCTATGGTGTATATAGCAATGATGTTCAGTTGGTTTGCCTGGCATGTGGAAGATCATGATTTGCACAGTTTAAACTATTTGCATATGGGGTCAGCGAAGACTTGGTACGGAGTGCCGAGGGAAGCAGCTGTTGCTTTCGAGGAAGTTGTCCGAGTCCATGGATATGGAGGAGAAGTCAATCCTCTTGTTACTTTTGCTATTCTTGGTGAGAAGACCACAGTGATGTCACCTGAAGTACTCGTCAGTTTAGGGATTCCATGCTGCAGATTGGTGCAAAATGCGGGGGAGTTTGTTGTCACTTTCCCAAGGGCATATCATTCAGGGTTCAGCCATGGATTTAATTGTGGAGAGGCAGCAAATATTGCTACTCCTGAATGGTTGAAGGTTGCAAAAGAAGCTGCAATTCGTAGGGCTTCAATAAATTATCCTCCCATGGTGTCTCATTTTCAGCTTCTCTATTCTCTTGCACTAGCATTATGTTCAAGCATACCTACAAGCATTGGTACTGAACCTCGGAGCTCTAGACTAAAAGATAAGAAGAGGGGTGAAGGGGATGCTATGGTTAAAGAGCTATTTGTGCAAAATATCATGCATAATAATGACCTTCTTCATATTCTTCTGGAGAAAGGTTCCTCATGTGTACTTCTTCCACATTCTTCAGATATGTCTGTATGCTCAAATTTGCGTGTTGGTTCCCAGAAAAAGGTAAAACCCCGATTGCCACTTAGCTTGTGTAGTCCTGATGAAACAATGGAAGCTTCGAAAGATTTACTTTCAGAGGATGCCATGCGAGAAAGAAATGCACATCTAAGGCATTTGAGTGGTTTCTATTCAGTGAAAGGAAAATCTTCGTCTGTCTATGGACAGAAAAGCCTTCATGCATTATGTGGGAATGATGATCTTTGCAGTTCCACTACAGAAAAGCAGAGCACAGATACTGAAAGAGAAAGTAATGTGAAAGGTGATGGATTAGTAGACCAGGGGCTATTTTCATGTGTGACATGTGGGATTTTGACCTTTGCATGTACAGCTATCATTCAGCCTAGAGAGGCGGCTGCTCAGTACCTCATGTCAACTGATTGTAGCGTCTTTAATGATTGGATTGTTGGTTCTGAAGTAACTAGTGATAGATATACTGTTTCAGTTGGAGATGCAAGTATGACTGGGTTGAATTCCTGTTCAGGACAAATGGGGAAGGGTGGTCTGTATGATGTCCCAGTCCAGTCTGGTGATTACCAATTTGAAGTGGCAGGTGGAAGTAGTAAAGTTGCTGCAGATGCTGAAGCTCAGAAAGGCATTTCCTCCCTCGATCTATTAGCAGTTGCCTATGACTCATCAGACTCTGAAGATGATCAGGACAAAACTGAGAAACCTGTGTTTTCTGACGAAAATGATTTTAGAGACTCTTCAGGAGAACTTGGATCTGCACAATCAGACCCCCCATCTAAACATAAATCACCTCTTTTGCCTGAGCCAAACCACAAGGATGAAGCAACCAGCAATACAGTAAGTTATGTGAATGAAGTTTCTGTTCAAGATTATGCTTCAGAAAGGACTCCTGGACGACCAAGTGCTACTTTCATGAATAATCAACAAAGTATTGATATCCCACTTGAGAGTGACAGAGAGAATTTAGTGACCTTGGAATCGAACAATTCAGATGATACATACAGGGATCCACTTGCACTTTCTAGGAGGGTTGTAAGTAGATCTGTTGAAACTTGTTACAGAGATGGAAAGTTGGAGAATTCAGAGTCCGGTCCTCAATATAGGCCTTCTACTTCCTCAAATGCTATCTCAAACTGTCTCCCTCTTGCTAATTTGGCTGAAAGAGCTGAGTTCAGTGATGCTGATAAATCGGTAAAGGGCAAAGCCAGTTCACTGATGCAAAGGCCTGATAGTGATTCTTCTCGATTGCATATATTCTGTCTTGAGCATGCTGTGGAAGTTGAAAAGCAACTTCATCCCATAGGTGGAGTGCATGTTTTACTTCTGTGTCATCCAGAGTATCTGAAGGTAGAAGCAGAAGCAAAATTGTTAGCAGAAGAAATGGGAATTGATTATATATGGAAGGATGTTCCATTCAGGGAGGCCACTGAAGAAGATCAGCAGAGAATCCGTTTGGCCCTTGATGATGATGAAGTTATTCCCACTAATGGGGACTGGGCTGCCAAGTTAGGAATCAATCTGTATTACAGTGCCATTCTCAGCTACACTCCTTTCTACAGCAAACAGATGCCATACAATTCAGTCATATACAAGGCATTTGGACGGAGTTCTCCAGTCAACTCTCCAACAAAACCAAAGGTTTCTGGGAAGAGGCCTGGCAAGCAGAAGAAGATACTTGTTGCGGGCAGATGGTGTGGGAAGGTCTGGATGTCGAACCAGGTTCATCCCTTTTTAGGTCAAATAGATGACTATGAAGAAGAACTTGCAAAAAGCTATTCCACAGGAGCAATGCCAAAAGAAAAGCCAGAGAGGAAACTAGACATTAACTGCCAGGAAAAACCGGATTTTTCAGAGAAGAAATCCTCAGGTGGAATAAACACTATGGTAGCCAAAAAGTCTGGACGGAAGAGGAAAAGATTTGAGAAGGGAGCAATCAAGAAACAGAAATGTCTGCAAAGAGAGAACCATAAAGCAACTGTAGATGAGCCACCTGAACCTGATACACCGTCTGGTGTGAAGAATCTCAGAACAGTCAGAAGTGGACAGATGAGACAAGAGACCATACGGCATCGTAATGATTGTGAAAATAACATCAGATGGGAGGATTCATATGAGAAGGATGACCTTGAAGGTGGACCCAGCACACGCCTAAGAAAGAGACCACCGAAGAAGCCCTCTAGAGAAGTGAAGGAGATGATGCATGAGAAGCAAACAAAGAAGAAAAAAGCCAAGAAAGCTCCAAGTAATAATGAAATAGATATGAAAGATGAGGAAGCAGAATACCAGTGTGATATGGAGGGATGCACAATGGGTTTTAGCTCAAAGCAAGAGCTGGTGTTGCACAAGCGCAACATCTGCTCGGTAAAAGGTTGTGGGAAGAAATTCTTCTCCCACAAGTATCTGGTGCAGCACAGGCGTGTCCACATGGATGACCGCCCCCTGAAATGCCCATGGAAGGGGTGTAAGATGACGTTCAAGTGGGCATGGGCACGGACTGAGCACATAAGAGTGCACACTGGTGCCCGGCCTTACGTTTGCCATGAACCAGGCTGTGGTCAAACATTTCGGTTTGTGTCAGATTTTAGCCGTCACAAGCGGAAGACTGGCCACTCGGTAAAGAAGGGTAAGGTATAG
Protein Sequence:
- >NNU_002974-RA|Nelumbo_nucifera|C2H2|NNU_002974-RA
MAAVSAAESPPEIFPWLKTLPLAPEYHPTVAEFQDPIAYILKIEKEASKFGICKIVPPLPPPPKKTAIANLNRSLAARSPNSNPKSPPTFTTRQQQIGFCPRKSRPVQKPVWQSGETYTLQEFEAKAKQFEKTHLRKTGKKALSPLEIETLFWKASVDKPFSVEYANDMPGSAFVPVNGKKWRESGEATTVGDTAWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYIAMMFSWFAWHVEDHDLHSLNYLHMGSAKTWYGVPREAAVAFEEVVRVHGYGGEVNPLVTFAILGEKTTVMSPEVLVSLGIPCCRLVQNAGEFVVTFPRAYHSGFSHGFNCGEAANIATPEWLKVAKEAAIRRASINYPPMVSHFQLLYSLALALCSSIPTSIGTEPRSSRLKDKKRGEGDAMVKELFVQNIMHNNDLLHILLEKGSSCVLLPHSSDMSVCSNLRVGSQKKVKPRLPLSLCSPDETMEASKDLLSEDAMRERNAHLRHLSGFYSVKGKSSSVYGQKSLHALCGNDDLCSSTTEKQSTDTERESNVKGDGLVDQGLFSCVTCGILTFACTAIIQPREAAAQYLMSTDCSVFNDWIVGSEVTSDRYTVSVGDASMTGLNSCSGQMGKGGLYDVPVQSGDYQFEVAGGSSKVAADAEAQKGISSLDLLAVAYDSSDSEDDQDKTEKPVFSDENDFRDSSGELGSAQSDPPSKHKSPLLPEPNHKDEATSNTVSYVNEVSVQDYASERTPGRPSATFMNNQQSIDIPLESDRENLVTLESNNSDDTYRDPLALSRRVVSRSVETCYRDGKLENSESGPQYRPSTSSNAISNCLPLANLAERAEFSDADKSVKGKASSLMQRPDSDSSRLHIFCLEHAVEVEKQLHPIGGVHVLLLCHPEYLKVEAEAKLLAEEMGIDYIWKDVPFREATEEDQQRIRLALDDDEVIPTNGDWAAKLGINLYYSAILSYTPFYSKQMPYNSVIYKAFGRSSPVNSPTKPKVSGKRPGKQKKILVAGRWCGKVWMSNQVHPFLGQIDDYEEELAKSYSTGAMPKEKPERKLDINCQEKPDFSEKKSSGGINTMVAKKSGRKRKRFEKGAIKKQKCLQRENHKATVDEPPEPDTPSGVKNLRTVRSGQMRQETIRHRNDCENNIRWEDSYEKDDLEGGPSTRLRKRPPKKPSREVKEMMHEKQTKKKKAKKAPSNNEIDMKDEEAEYQCDMEGCTMGFSSKQELVLHKRNICSVKGCGKKFFSHKYLVQHRRVHMDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCHEPGCGQTFRFVSDFSRHKRKTGHSVKKGKV