Gene Details:
- Gene ID: Niben101Scf00927g13024.1
- Gene Family: C2H2 family
- Description: C2H2 family protein
- Species: Nicotiana benthamiana
- Source: C2H2 family gene from PlantTFDB
Protein Features:
- Pfam: PF10248
- SuperFamily: SSF103025
- TIGRFAMs: TIGR03317
- Gene3D: G3DSA:3.40.50.1010
- SuperFamily: SSF57667
- PROSITE profile: PS50157
- Gene3D: G3DSA:3.30.160.60
- PROSITE pattern: PS00028
- Pfam: PF01936
- InterPro: IPR019376 IPR017703 IPR029060 IPR007087 IPR013087 IPR021139
Annotation Proteins:
- Refseq: XP_019257442.1 — PREDICTED: protein SHOOT GRAVITROPISM 5-like
- Swissprot: F4IPE3 — IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
- TrEMBL: A0A1J6IF73 — A0A1J6IF73_NICAT; Protein shoot gravitropism 5
- STRING: XP_009775158.1 — (Nicotiana sylvestris)
Gene Ontology:
- GO:0009590 — Biological Process — detection of gravity
- GO:0009959 — Biological Process — negative gravitropism
- GO:0009965 — Biological Process — leaf morphogenesis
- GO:0010031 — Biological Process — circumnutation
- GO:0010601 — Biological Process — positive regulation of auxin biosynthetic process
- GO:0048444 — Biological Process — floral organ morphogenesis
- GO:2000012 — Biological Process — regulation of auxin polar transport
- GO:2000904 — Biological Process — regulation of starch metabolic process
- GO:0005634 — Cellular Component — nucleus
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction:
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature:
- AtZFP1, encoding Arabidopsis thaliana C2H2 zinc-finger protein 1, is expressed downstream of photomorphogenic activation. DOI: 10.1023/a:1006352809700 ; PMID: 10794528
Sequences:
CDS Sequence:
- >Niben101Scf00927g13024.1|Nicotiana_benthamiana|C2H2|Niben101Scf00927g13024.1
Protein Sequence:
- >Niben101Scf00927g13024.1|Nicotiana_benthamiana|C2H2|Niben101Scf00927g13024.1
MLDNSSSLPVGPASSSEAFNNSAENSGVSNRRKRRPAGTPDPDAEVVSLSPKTLLESDRYICEICNQGFQRDQNLQMHRRRHKVPWKLVKRETHQVKKRVFVCPEPTCLHHDLCHALGDLVGIKKHFRRKHSNNKQWVCEKCSKAYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDNCTVRRSSSTRPDLPAGCSSRTASSTSPSSDTNFSSIAPNLPRLTIIPLPNNSDQHNEFPSSSYNNDQQHNLELGLLPSSIACPSRTSDHENEATHLKLSIGSSSRVVSKDHKELHLAMAEKAYAEEARRQAKRQIEIAELEFANAKRIRQQAQAESERAQNLKEEATKRISSSILEITCHACKNKFQATDESSPAMSYMSSATTEADGEH