Information report for mrna25809.1-v1.0-hybrid
Gene Details
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Functional Annotation
- Refseq: XP_011464316.1 — PREDICTED: dnaJ homolog subfamily C member 21-like
- Swissprot: Q9C911 — JJJ1_ARATH; DNAJ protein JJJ1 homolog
- TrEMBL: A0A2P6P307 — A0A2P6P307_ROSCH; Putative transcription factor C2H2 family
- STRING: XP_004301120.1 — (Fragaria vesca)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0008270 — Molecular Function — zinc ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Brassica oleracea: XP_013620746.1, XP_013620745.1
- Brassica rapa: XP_009128038.1
- Cucumis melo: MELO3C017222P1
- Juglans regia: WALNUT_00011068-RA
- Malus domestica: MDP0000178668, MDP0000690979
- Manihot esculenta: Manes.06G085000.1.p
- Nicotiana tabacum: XP_016505864.1
- Prunus mume: XP_008240022.1
- Prunus persica: Prupe.5G204600.3.p, Prupe.5G204600.2.p, Prupe.5G204600.1.p
- Raphanus raphanistrum: RrC232_p2
Sequences
CDS Sequence:
- >mrna25809.1-v1.0-hybrid|Fragaria_vesca|C2H2|mrna25809.1-v1.0-hybrid
ATGGAGCGGCGGTGCCACTACGAGGTGCTGGGCCTGGACCGCGGCTGCGCCGCCGACGAGATCAAATCGGCCTACCGTAAACTCGCCCTCCAGCGCCACCCCGACAAGCTGGTCCCCACCGGCGTCTCCCAGGCCGACGCCAACGCCCAGTTCCAGGAGCTCGGCCACGCCTACGAGGTCCTCTCCGATCCCAAAGAGCGCGCCTGGTACGACTCCCACCGCTCCCAGATCCTCTTCGCCGATCCCTCCGCCGCCAACTCCGTCCCCGACTCCGTCATCCCCAACCTCTTCTCCTTCTTCTCCACCACCGTCTTCTCCGGCTACTCCGACTCCGGCAAGGGATTCTACAAAGTCTACTCCGACGTCTTCACCAAAATCTACTCCAACGAGCTCAGCTTCGCCCGGAAGCTAGGGCTCGGGATCGACGCCGTGAGGGAGGCGCCGGCGCTGGGGAATCTGAAAAGCGACTACTCTCAGGTGACGGCGTTTTACAACTACTGGCTAGGGTTTTGCACGGTGATGGATTTCTGCTGGGTGGACCAGTATGACGTCATGGCGGGGCAGAATCGGAAGCTGAGGCGGTTGATGGAGGAGGATAACAAGAAGCAGAGGAAGAAGGCGAAGAGGGAGTACAACGACACCGTTCGGGGGCTGGCGGAGTTTGCGAAGAAGAGGGATAAGAGGGTGATGGATATGATGGTGAAGAGGGAGGAGGAGAGGAAGAGGAAGAAGAAGGAGGAGGTGGAGAAGAAGAAGAGGATGGAGAGGGAGAAGTTGGAGAGAGCTATGGCGTTTGAGGAGCCGGAGTGGGCGAAAGCGGAGGAGGACGACGAGGAGGAGGTTGATGAGGAGGAGGAGGAGGAGAGGAAGAGGAATGAGCTGTATTGCGTGGTGTGTGGGAAGAAGTTTAAGAGTGAGAAGCAGTGGAAGAATCACGAGCAGTCCAAGAAGCATAAGGATAAGGTTGCGGAGTTTAGGGAGTCGATTGGGGATGAGGAGGAGGTGGAGGATTTAGGTGAGCGAATGAGGGAGGGTTTGGAGATTGGGGAGGAGGGAGAGAGTGGCGGTGAGGATGAGTTTCATGATTTCAGTGATGAAAAACTTGACAAGGACGATGATGATGATGGTGATGATGATGAGATGGAACTTCTTCAAGCAATGGCGGCCAGGCACAAGAGTAGGGAAGAGCTTGACGACGACGATGATGATGAGGATGACGATGAAATGGAGCTTCTAAAGGCAATGGCAGCCAGGCACAAGAGTAGGGAAAATGTTGGCGAGGCAGTTGGAGTTGATGACGGTGGTAGTGAGAGTGATGATGAAATGGATGTTCTTGAAGCAATGGTGGCCGGGCGAAAGAGCAGGAAAAATGCAGCTTCAAAGGTTGAGGTTGAGGATCCCTTGGTGACCCGTGTTCATGGGGACAATGATATCAATGGTGTAGAGTCCGTTCCTATGGAATATGAGAATCGAAAGCCTCCTAGAAGGAAAGCCAAGAGTAAGAAGAGTGGTGGAGAAACAAAAAGAGTTGATATGAATGATATTAGTAATGATCAAAGTGAGGCAGGTGAAAATGATAATTCTGATATAAAGGAATCCACATCTGATTCTATGGCGGAAAAGGAAAATGCGAGTAGTAACGATAAACAGGATAATCAAATAGCCAGAAAGAAGAAATCTTCAAAACAGACTGTTGAGAAGAAGAAAGAGAATGTGAAGAACGAAGCCAACGGCAAATCAAAGAGCTCTTCCAAAGGGAAGAAAGCTAAGGCAACATCAAAGAACTCTAGCAATGCATGTGACACATGCGGAGAGGAGTTTGGATCAAGGAACCAATTACATAAGCATTTAGGTGACACTGGACATGCTTCACTGAAGAAGTGA
Protein Sequence:
- >mrna25809.1-v1.0-hybrid|Fragaria_vesca|C2H2|mrna25809.1-v1.0-hybrid
MERRCHYEVLGLDRGCAADEIKSAYRKLALQRHPDKLVPTGVSQADANAQFQELGHAYEVLSDPKERAWYDSHRSQILFADPSAANSVPDSVIPNLFSFFSTTVFSGYSDSGKGFYKVYSDVFTKIYSNELSFARKLGLGIDAVREAPALGNLKSDYSQVTAFYNYWLGFCTVMDFCWVDQYDVMAGQNRKLRRLMEEDNKKQRKKAKREYNDTVRGLAEFAKKRDKRVMDMMVKREEERKRKKKEEVEKKKRMEREKLERAMAFEEPEWAKAEEDDEEEVDEEEEEERKRNELYCVVCGKKFKSEKQWKNHEQSKKHKDKVAEFRESIGDEEEVEDLGERMREGLEIGEEGESGGEDEFHDFSDEKLDKDDDDDGDDDEMELLQAMAARHKSREELDDDDDDEDDDEMELLKAMAARHKSRENVGEAVGVDDGGSESDDEMDVLEAMVAGRKSRKNAASKVEVEDPLVTRVHGDNDINGVESVPMEYENRKPPRRKAKSKKSGGETKRVDMNDISNDQSEAGENDNSDIKESTSDSMAEKENASSNDKQDNQIARKKKSSKQTVEKKKENVKNEANGKSKSSSKGKKAKATSKNSSNACDTCGEEFGSRNQLHKHLGDTGHASLKK*