Information report for mrna15119.1-v1.0-hybrid
Gene Details
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Functional Annotation
- Refseq: XP_004291889.1 — PREDICTED: protein indeterminate-domain 2-like
- Swissprot: Q9SCQ6 — IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
- TrEMBL: A0A2P6PYJ3 — A0A2P6PYJ3_ROSCH; Putative transcription factor C2H2 family
- STRING: XP_004291889.1 — (Fragaria vesca)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Cajanus cajan: C.cajan_18631
- Glycine max: Glyma.06G033300.1.p
- Gossypium arboreum: Cotton_A_13737_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A05G1677
- Malus domestica: MDP0000265846, MDP0000373134
- Manihot esculenta: Manes.05G162100.1.p
- Populus trichocarpa: Potri.002G263600.1, Potri.014G180600.1
- Prunus mume: XP_008220893.1
- Prunus persica: Prupe.1G381800.1.p
- Pyrus bretschneideri: Pbr006167.1, Pbr020098.1
- Vitis vinifera: GSVIVT01009680001, GSVIVT01019000001
- Ziziphus jujuba: XP_015884641.1
Sequences
CDS Sequence:
- >mrna15119.1-v1.0-hybrid|Fragaria_vesca|C2H2|mrna15119.1-v1.0-hybrid
ATGTGTCAGAGTTGGGGTTACACTGAAGAGGAATTATTCGGTGCGACAGCCGTGTCATGTGTTCGTGCTGCGTTCTCCGGCGAAGCTTCTTCTTCCTTTCTCTGGAGAATCTTGGCTCGTTGGAACTCTGGGAGCGAATGGAGGGGAGAGGTGGAGAGGAAGAAGGCGGAAAGAGGAGGGGTAGGGTTTCGAAGGGTGTGGCGGTCGCGGAATTTGGGGCTGGAAATGAGGGAGAGTAGCGGAGGAGGGACTTGGCTTCAAGGCGGAGGAGAATCTGTGAGAGGAGAACGTTGTGGTTGGCGATGGTTTCGGCCAACGAGGACCTGGAGCTCTGATAGATTGAAGAAACCTACCAAAATGGACGACCTTGACAATTCCTCATCACTAGTTGATTCTACTGCTTCAGCAGAAGCTTCTTTTTCCGAGCCTCCGGCCAAGAAAAAGAGAAATCTTCCCGGAATGCCAGATCCTGACGCTGAGGTGATCGCTTTATCGCCGAAAACTCTGATGGCGACGAACCGTTTCGTGTGCGAGATCTGCAACAAAGGGTTCCAGCGGGACCAGAACCTTCAGCTCCACCGGCGGGGCCACAACCTGCCGTGGAAGCTGAGGCAACGAACCACGACGGAAGTTAAGAAGCGGGTTTACGTCTGCCCGGAGACGTCGTGCGTGCACCACAACCCGGCCCGAGCGCTGGGCGATCTCACCGGGATTAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAAAAGTGGAAGTGCGAGCGGTGCTCCAAGAAGTACGCAGTGCAGTCGGATTGGAAGGCTCACATGAAGACCTGCGGCACCAGAGAGTACAAATGTGACTGTGGAACCTTGTTTGCTAGGAGGGATAGCTTCATAACGCATAGGGCTTTCTGTGACGCCTTGGCCGAGGAGAGTGCCAAGGCTCAAACCCTAGGAAGCTCGCAGCTGGGAACTCCAAATCCGAACCCGAATGCCGGAAAGGCCGTCCTGGTGGCGTCGCCGCCTCCACCGCCTCTCACGCCTTCCAACATTGTTGTGTCTCCGGCTCTATCCATTCAAAGCTCAGAATTCCCAGCAGAAAACCCAGTAAGAGTGTCGCCACCACCGCCAGCAACAACGTGCCTAACGAGTGCCACAACGGCCATTGGCACCACTGCCACTGCCACCACCACCTCAACCGGAAATTGCAGCAACACTAGTACTAGTGTGTTTGCTAGCATATTTGCTCCTTCCAGCAACGCCTCACAAACATCAGCAGCTGCTAACTCGTCATACAGTTCGGCAATCCCATCAGTCTCCGCCATGGAACCAACGTCTCTCTCACTCTCCACCTCTCTGTACCTATCCAACAATGGCTCCTCCCTCTTCCCAACAACCAACCACCAAGACCAACGCCAGTATGTAGCTTCTCCTCAGGCCCCGGTCATGTCCGCTACTGCATTGCTCCAAAAAGCAGCACAAATGGGTGCAGCTACGACTAGTGAATCTTTTCTTCGTGGCTTTGGCTTGGACACTTCCTCATCGCCTCCCCAGGCGCAAGATAGCACCGCCTCTTTGCAGTGGAGCAACAACAGCCACATCCAGCAGCACAAAAGAGATGGCAGTGGCGGTGCTGCGGTTACAGTGGCAGCTGGGCTGACTGATCTCATGATGGGTCCGCCTTTGCCGTTTGGGAGTCATCATCAGCCCATGACCCGTGACCTTCTTGGGCTGGGCATAGGTGATAATGGCGGCGGCGGCAATGCCTCATCTGGCGGACTCTCTGCTTTGCTCAACTCATTTGGAGGTCGTGGAGGTTATACTACATATGCAAGGGGAGAAGAGTCTTCATGGGAAGGTGCACCAGAGAGCAAGCCTAATACTTCCAATGGTCCGGCCTTGCTCTAA
Protein Sequence:
- >mrna15119.1-v1.0-hybrid|Fragaria_vesca|C2H2|mrna15119.1-v1.0-hybrid
MCQSWGYTEEELFGATAVSCVRAAFSGEASSSFLWRILARWNSGSEWRGEVERKKAERGGVGFRRVWRSRNLGLEMRESSGGGTWLQGGGESVRGERCGWRWFRPTRTWSSDRLKKPTKMDDLDNSSSLVDSTASAEASFSEPPAKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTTEVKKRVYVCPETSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFARRDSFITHRAFCDALAEESAKAQTLGSSQLGTPNPNPNAGKAVLVASPPPPPLTPSNIVVSPALSIQSSEFPAENPVRVSPPPPATTCLTSATTAIGTTATATTTSTGNCSNTSTSVFASIFAPSSNASQTSAAANSSYSSAIPSVSAMEPTSLSLSTSLYLSNNGSSLFPTTNHQDQRQYVASPQAPVMSATALLQKAAQMGAATTSESFLRGFGLDTSSSPPQAQDSTASLQWSNNSHIQQHKRDGSGGAAVTVAAGLTDLMMGPPLPFGSHHQPMTRDLLGLGIGDNGGGGNASSGGLSALLNSFGGRGGYTTYARGEESSWEGAPESKPNTSNGPALL*