Information report for mrna09903.1-v1.0-hybrid
Gene Details
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Functional Annotation
- Refseq: XP_004301036.1 — PREDICTED: lysine-specific demethylase REF6
- Swissprot: Q9STM3 — REF6_ARATH; Lysine-specific demethylase REF6
- TrEMBL: A0A2P6P5A5 — A0A2P6P5A5_ROSCH; Putative [histone H3]-lysine-36 demethylase
- STRING: XP_004301036.1 — (Fragaria vesca)
- GO:0009741 — Biological Process — response to brassinosteroid
- GO:0009826 — Biological Process — unidimensional cell growth
- GO:0010228 — Biological Process — vegetative to reproductive phase transition of meristem
- GO:0033169 — Biological Process — histone H3-K9 demethylation
- GO:0035067 — Biological Process — negative regulation of histone acetylation
- GO:0040010 — Biological Process — positive regulation of growth rate
- GO:0045815 — Biological Process — positive regulation of gene expression, epigenetic
- GO:0048366 — Biological Process — leaf development
- GO:0005634 — Cellular Component — nucleus
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
- GO:0071558 — Molecular Function — histone demethylase activity (H3-K27 specific)
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Citrullus lanatus: Cla97C03G054490
- Gossypium hirsutum: Gh_D07G0545, Gohir.D07G058400, Gohir.A07G054000
- Juglans regia: Jr02_01930, WALNUT_00020075-RA, Jr09_04290
- Malus domestica: MDP0000298212
- Prunus avium: Pav_sc0000522.1_g100.1.mk
- Prunus mume: XP_008239384.1
- Prunus persica: Prupe.5G159200.1.p, PRUPE_5G159200
- Pyrus bretschneideri: Pbr036965.1
- Rosa chinensis: RchiOBHm_Chr7g0191461
- Ziziphus jujuba: XP_015882347.1
Sequences
CDS Sequence:
- >mrna09903.1-v1.0-hybrid|Fragaria_vesca|C2H2|mrna09903.1-v1.0-hybrid
ATGGCAGCACCTCCAGAGCAGCCCCCGGAGGTCCTCCCCTGGCTGCGAGCCCTCCCCGTAGCTCCCGAGTACCACCCCACCTGGGCCGAGTTCCAAGATCCGATTGCCTACATTTTCAAGATCGAGAAAGAAGCTTCCCAGTACGGCATCTGCAAAATCGTGCCACCTGTCCCTCCGGCACCGAAGAAGACCGCAATTGCTAACCTCAACAAGAGTCTGATACTACGTAACGGGCCGGTAACCGGTAAAGGCCCGAAAGCCCAGCCCACATTCACCACCCGGCAGCAGCAGATCGGGTTCTGCCCCCGGAAGGCCCGCCCGGTGCAGAGACCCGTCTGGCAGAGCGGCGAGCATTACACTTTCAGTCAGTTCGAGGCAAAAGCGAAGAGCTTTGAGAAGAGCTACTTGAAGAAGCAGAGGAAGAAGGGAGGGCTGAGTGCTTTGGATATCGAAACACTGTACTGGAAGGCCACTGTGGACAAGCCGTTTTCGGTTGAGTACGCCAATGACATGCCCGGGTCGGCATTCGTGCCGCTGAGCTCGAAGAAGAGTGGGGGGAGTACTAGCAGGGAGGCAGGGGATGGGGTTACGCTTGGGGAGACTGCGTGGAATATGAGAGGGGTTTCGAGGTCGAGAGGATCTTTGTTGAGGTTTATGAAGGAGGAGATTCCCGGGGTTACGTGTCCCATGGTGTATGTGGCTATGATGTTCAGCTGGTTTGCTTGGCACGTGGAGGATCATGACTTGCATAGCTTGAATTATTTGCACATGGGGGCCGGGAAGACTTGGTATGGCGTGCCCAGGGAGGCTGCGGTGGCGTTTGAGGAGGTGGTCAGGGTTCAGGGGTATGGAGGAGAGATCAATCCTCTTGTTACATTTGCGACTCTTGGTGAGAAGACCACCGTGATGTCACCTGAAGTATTTATCAGTTCAGGGATTCCATGCTGCAGGTTAGTGCAAAATGCTGGGGAATTTGTTGTCACTTTTCCAAGAGCGTATCACACTGGATTCAGTCATGGATTTAATTGTGGGGAGGCAGCCAACATTGCAACTCCTGAGTGGTTGAGGGTTGCCAACGATGCTGCTGTCCGACGAGCTTCAATCAATTATCCTCCTATGGTGTCTCATTTTCAGTTACTTTATGATCTTGCTCTAGCATTATGTTCAAGAACACCTGTGCACAGTAGTGCTGAACCTCGAAGTTCTCGACTAAAAGATAAGAAAAAGGGTGAAGGAGAAACAGTAGTTAAGGGTTTATTTGTGAAGAATGTCATTCAGAACAATGAGCTGCTTCATGTTCTTGGAAAAGGGTCGTCAATCGTACTTCTACCACAGAGTTCTTCAGACATTTCTGTTTGTTCAAAATTACGTGTTGGTTCACAGTTGAGAGTGAACCCGGATGATCTCATTATAGACGGAAATCGGGGAATCAAGCAGGTTTCGGTGAAAGGAAAACTTGCATCTTTATGTGAAAGTAGCCGACATCTCTCATTAAATGGAAATGACAGTGCAGCTACTCCTTCTAAGATGTTGAACATGAGCGCTAAAAGAGAAAGTAATGTCGAAGGGGAAGGGTTGTCAGATCAGAGACTGTTTTCTTGTGTTACATGTGGGATTTTGAGCTTTTCATGTGTTGCTATCATTCAACCAAGAGAAGCAGCAGCCAGATATCTCATGTCAGCAGATTGTAGTTTTTTCAATGATTGGGCTGTTGATTGTGAGCCAATCCAGGGTGCAAATGGAGATCCAAATAGTTCTAAGAAGGGTCCCTGTACAGAAACAGGATTGAAGCAAAAAAGTGCCCCTGATAGTTTATATGATGCACCCTTTCAGTCTGCTGATAATCAAAATCAGATCACAGATCCATCCAATGAAGTTGATTCAAATACTGAAAACCAGAGAGATACTAATGCACTTGGGCTATTAGCTTTGACCTATGGAGTTTCATCTGACTCGGAGGAAGATCAGGCTAACCAAGATGTTCCTGTTTGTGGTGACAAATCAAACTTGTCTGACTGTTCTTTGGAAGGTAGATATGAGTATCAAAGTGCTAGTCCTCCTTTGAGAGCCTCTTATGGTGGTACAGCTGGGGTTCGCAGTCCCACTTCACCAGGATTTGATTGTGGTATTGGACTCCCAACAATTGATGGTAATGGACTCCCAACTATTGATGTCTATGTGGAAAATAGACCTGAAGCAACTAATTTCAAGGATAAGGGTCATCAATATTCTGTTGATCTTGACACCAATAATCTTGCTTTGACAAAGACAAATGGTTTGGTGGGTACATCTATAGATCCAATGAAGGTTTCATATTCTGGCTCCCCAGATGCATTTGACGTTCAACCAACTGGATTTGGTCAGGTCACTTTACGGAAAGATAGCACAGGTACATCATTTGCTCCAGGATTTGACCATGATTCTTCTAGAATGCATGTGTTCTGCCTTGAGCATGCCGTAGAGGTTGAGCAGCAGCTCCGTTCATTTGGCGGCGCCCATATATTACTCCTTTGTCATCCAGACTATCCGCGGATAGTGGATGAAGCAAAAGAAATAGCGGAAGAACTGGGAGTAAATTATCCCTGGAATGATTTGGTATTCAGGAATGCCACCAGGGCGGATGAGCAGAGGATTCAGTCAGCTCTGGATAGTGAGGAAGCCATTGCTGGGAATGGAGACTGGGCTGTAAAGATGGGGATCAATCTCTTCTACAGTGCCAGCCTTAGCCGCTCTCATCTTTATAGTAAGCAGATGCCGTACAATTCTGTTATATACAATGCATTTGGTCGTAGTTCTCCAGCAACCTCCCCTGCTGGACCTGAGGTCTGTGGGAGGAGGCCCGCCAAACAGAAAAAGGTGGTGGTAGGGAAATGGTGCGGTAAAGTTTGGATGTCAAATCAAGTTCATCCCTTCCTAATAAAAAGGGAACATGAAGAGAAAAAGGTGGAGCAAGAACGGAGGAGGTTCCAGGAATCGCCAATTCCAGATGAGAAGCTTCATGGAAACACAGAAAGCACACACAAAACTGAGAAAACTGTGGTGACGAAACAGTATTCTAGGAAGAGGAAAATGACCGTAGATGGTGAGACAACCAAGAAAGCAAAACGTACTGATGCAGTTTCTGCTCAGTCAGTAGATGATGACTCCCATCTACAGCAGATGAGGTTTCTCAAGAACAAGCAAGGCAAACATATAGAGAGTGGTCCAACCAAGAAATCAAAAATTGAGAAAGAAGATGCAGTGTCGAGTGATTCAATGGAAGATGATTTCCGTCAGCAAAACAGGAGGACTCTTCGAAGCAAGCAAGCCAAGCATTCTGTGGGGGATGATGATGTTTCAGATGATTCAATGGGAGTTGATTCTCAACAGCAGCAGACGCGGATTGCTAAAAGTAAGCAAGCAAAGCACAGTGCCAAAGATTTCTCTGTGGTGTCAGATGATTCAGTTGGAGTTGATTCTGATCATCAGCAGAAGCGGGTTGCTGAAAGTAATACCAGAGAGTTCTCTGCGGTTTCAGATGATTCGCTTGATGAAAGTATCCATCAGTTGCATAGGAGGTCACTTAGACGCAACAAAGGTAAAAGCATTGGGAGAGAAAATTTCACCTCACAAAATCTTTATGGGGTCAGTTCTCGCCAGAAACAAAAGAAAACTTCTAAAAGCAAGCAGGCCAAAATTGTTGAGAGAGAAGAAGCAGCTCTGGATGAAACAACAGACGATAATGCTGCACTGCAGCATAAGATTGTCCGAGGCAAGCAGATAAAACCAGAGACCCTTCAGCAAATGAAACGGGAAACCCCTCACCGTGTGAGACAAGGGTCCCGCCGTTTACAAGAAAGCCAGCAACAGACTCCCAGGATCCGAAACACCACTGATGTCCATGCTGAGGAACCAGAAGGTGGGCCTAGCACGCGACTTAGAAAAAGACCTCCAAAAGAGCAGCCAGAAACCAGTAGGAAAAAGGCAAAAGTGCAGCCAGAAACTGGAAGGAAAAAGGCAAAAGAGCAGCAACAAACCGGTAGGATCAAGGTAAACACTGCTTCAGCTGTGAAGACAAAGAATGCTTCAGCTCGAAAGACAAAGAACGCTTCAGGTGCGAGGGTAGAGGAAGCAGAATTCGTGTGTGATATTGAGGGGTGCACCATGAGTTTTGGCACAAAACACGAGCTTAATCTCCACAAGAAAAACGTGTGTCCAGTCAAGGGGTGTGGAAAGAAATTCTTCTCGCACAAGTATCTGGTGCAACATCGTCGAGTGCACGAGGATGACCGCCCCCTTCGGTGCCCTTGGAAGGGATGCAAAATGACATTCAAGTGGGCATGGGCTCGGACGGAGCACATCAGGGTACACACAGGTGCTCGTCCCTACGTCTGTGCTGAGCCAGGTTGTGGGCAGACCTTCCGGTTTGTGTCAGATTTTAGCCGTCATAAGCGGAAGACTGGGCATTCAGTAAAGAAAGGTAAAGGGCGATCACGGTGA
Protein Sequence:
- >mrna09903.1-v1.0-hybrid|Fragaria_vesca|C2H2|mrna09903.1-v1.0-hybrid
MAAPPEQPPEVLPWLRALPVAPEYHPTWAEFQDPIAYIFKIEKEASQYGICKIVPPVPPAPKKTAIANLNKSLILRNGPVTGKGPKAQPTFTTRQQQIGFCPRKARPVQRPVWQSGEHYTFSQFEAKAKSFEKSYLKKQRKKGGLSALDIETLYWKATVDKPFSVEYANDMPGSAFVPLSSKKSGGSTSREAGDGVTLGETAWNMRGVSRSRGSLLRFMKEEIPGVTCPMVYVAMMFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPREAAVAFEEVVRVQGYGGEINPLVTFATLGEKTTVMSPEVFISSGIPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVANDAAVRRASINYPPMVSHFQLLYDLALALCSRTPVHSSAEPRSSRLKDKKKGEGETVVKGLFVKNVIQNNELLHVLGKGSSIVLLPQSSSDISVCSKLRVGSQLRVNPDDLIIDGNRGIKQVSVKGKLASLCESSRHLSLNGNDSAATPSKMLNMSAKRESNVEGEGLSDQRLFSCVTCGILSFSCVAIIQPREAAARYLMSADCSFFNDWAVDCEPIQGANGDPNSSKKGPCTETGLKQKSAPDSLYDAPFQSADNQNQITDPSNEVDSNTENQRDTNALGLLALTYGVSSDSEEDQANQDVPVCGDKSNLSDCSLEGRYEYQSASPPLRASYGGTAGVRSPTSPGFDCGIGLPTIDGNGLPTIDVYVENRPEATNFKDKGHQYSVDLDTNNLALTKTNGLVGTSIDPMKVSYSGSPDAFDVQPTGFGQVTLRKDSTGTSFAPGFDHDSSRMHVFCLEHAVEVEQQLRSFGGAHILLLCHPDYPRIVDEAKEIAEELGVNYPWNDLVFRNATRADEQRIQSALDSEEAIAGNGDWAVKMGINLFYSASLSRSHLYSKQMPYNSVIYNAFGRSSPATSPAGPEVCGRRPAKQKKVVVGKWCGKVWMSNQVHPFLIKREHEEKKVEQERRRFQESPIPDEKLHGNTESTHKTEKTVVTKQYSRKRKMTVDGETTKKAKRTDAVSAQSVDDDSHLQQMRFLKNKQGKHIESGPTKKSKIEKEDAVSSDSMEDDFRQQNRRTLRSKQAKHSVGDDDVSDDSMGVDSQQQQTRIAKSKQAKHSAKDFSVVSDDSVGVDSDHQQKRVAESNTREFSAVSDDSLDESIHQLHRRSLRRNKGKSIGRENFTSQNLYGVSSRQKQKKTSKSKQAKIVEREEAALDETTDDNAALQHKIVRGKQIKPETLQQMKRETPHRVRQGSRRLQESQQQTPRIRNTTDVHAEEPEGGPSTRLRKRPPKEQPETSRKKAKVQPETGRKKAKEQQQTGRIKVNTASAVKTKNASARKTKNASGARVEEAEFVCDIEGCTMSFGTKHELNLHKKNVCPVKGCGKKFFSHKYLVQHRRVHEDDRPLRCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSVKKGKGRSR*