Information report for mrna03614.1-v1.0-hybrid
Gene Details
|
|
Functional Annotation
- Refseq: XP_004300933.2 — PREDICTED: lysosomal beta glucosidase-like isoform X1
- TrEMBL: M5VW21 — M5VW21_PRUPE; Uncharacterized protein
- STRING: XP_004300933.1 — (Fragaria vesca)
- GO:0005975 — Biological Process — carbohydrate metabolic process
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0004553 — Molecular Function — hydrolase activity, hydrolyzing O-glycosyl compounds
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Gossypium arboreum: Cotton_A_32041_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A05G3867, Gh_A05G2341, Gh_D05G1175
- Malus domestica: MDP0000175922, MDP0000181649, MDP0000321222
- Manihot esculenta: Manes.02G205100.2.p, Manes.02G205100.1.p, Manes.02G195200.1.p
- Prunus mume: XP_008219031.2, XP_008242644.1
- Prunus persica: Prupe.1G551600.1.p, Prupe.1G551600.4.p, Prupe.1G551600.2.p
- Pyrus bretschneideri: Pbr027596.1, Pbr016404.1, Pbr000874.1, Pbr042005.1
- Ricinus communis: 29967.m000088
- Vitis vinifera: GSVIVT01025855001
- Ziziphus jujuba: XP_015867533.1
Sequences
CDS Sequence:
- >mrna03614.1-v1.0-hybrid|Fragaria_vesca|C2H2|mrna03614.1-v1.0-hybrid
ATGGAGAAAGGCGAAGCGGAGGAGAAGAAGAGGCCGATTTTCCGAGATATAAGGCGGTATTATTGCGAGTATTGCGGAAACTGTAGATCCAAGAAGTCTCTGATTGCTTCTCATATCTTGGCTCAACACAAGGATGAGATGGAAAGGGATGAGGGTGATGAGGAAGTAGAGGTGGAGAAGTGTAATACATGTGAAGAATGTGGTGCTAGTTTCAACAAGCCTGCATATCTGAAGCAGCATATGATAAGCCATTCACTTGAGCATTGGATCCCACCAAAGAACTCCAAAATGCGAGAGGGTACAGACTTGAATGGACCAGTACCAGGGGGGAGACCTCCTGTGAAGCTCCATCAAGTGACCCTCAATCACACTAGGCCATATGTTTGCACAATCGATGATTGTCGTTCTGCTTATAGAAGGAAGGACCATTTGAACCGTCATCTTCTTCAGCACCAAGGAAAACTCTTTAAGTGTCCAATTGAGAACTGTAAGAGTGAATTTGCTTTTCAAGGTAACGTGAAGAGGCATGTTGTAGAATTGCACAGTGAGAATTGCCCTTCTATTAGCGTTGAAGGTCAAAAGCAGCATGTGTGCCAGGAACCTGGTTGTGGAAAGGTGTTCCAATTTGCTTCGAAGCTGTGGAAATACGAGGATTCTCATGTTAAGCTGGACTCAGTGGAAGCCTTCTGCTCTGAACCAGATTGTATGAAATATTTTTCTAATAAGCAATGCCTTCAGGACCATATCCAGTCCTGCCACACTCATATCACTTGCGAGATATGTGGGAACAAGGAATGGAAAAAGAACATCAGAACCCATCTCCATGCTCATGAAGAGGGAGTCTCTTCATTGGAAATCAAATGTGAATATGAGGGTTGTCTTCACACATTTACTAAAAAATTGAATCTTCTCCAGCATGTGAAAGCTGTACACCTCCAACAGAAACCCTTCTCTTGTAGCTTCTCAGGTTGTAGCAAGACATTCTCATACAAGCACGTGAGAGATAAGCACGAAAAGTCTGGATGTCATGGGGATTTTGAGGAGGCTGATGAGCAATTCCGGTCAAGGCCAAGAGGTGGGCGAAAGAGGATGTGTCCAACAGTGGAAATGCTTGTACGTAAAAGGGTTACTCCACCAGATCAATTTGGACCAGAGACCGAGTTCCTCTCCCAGTTCTTCTCACAAGAGGAAATGGCTGAAATTCTCATCTCCTTGATGGGGCTTCTTCTCTTATGCATATGCATAGAAATAATGACGATGACAGCAGAAGCAGAATGCATGAAATATAAGGACCCCAACCAGCCCTTAAATACTAGAATCAATGATCTACTGAGCCGCATGACCTTGGAGGAAAAGATTGGACAAATGACGCAGATAGACCGGAGTGTTGCTTCACCTGAAGTGATGTACAAGTACAAGATAGGGAGTGTTTTGAGTGGGGGTGGGAGTGTGCCAGCAAAAAATGCTTCTGCAGAAACTTGGATTAGAATGGTGAATGATTTTCAAAACGGATCTTTGTCGACTCGGCTTGCTATTCCACTGATTTATGGTATTGATGCCATTCATGGCCACAACAATGTCTACAAGGCAACAATCTTCCCTCACAATGTTGGACTGGGAGCTACTAGGCAAAGGATTGGAGCTGCAACTGCGCTTGAAATTAGAGCTACAGGAATTCATTATACCTTTGCACCTTGTGTAGCGGTTTGTAGAGATCCAAGATGGGGTCGTTGTTACGAAAGCTACAGTGAAGATCCTAGGCTTGTTCAAGCAATGACTGAGATCATACCTGGATTACAAGGAGAGATACCAGCTAACTCTAGAAAGGGTGTTCCCTATGTATCAGGAAACGATAAGGTTGCAGCTTGTGCAAAGCATTATGTGGGAGATGGTGGAACAGCCATGGGTATCAATGAGAATAACGCTGTGATAGATAGACATGGCTTACTGAGCATTCACATGCCACCCTATCCCAGTGCAATTATCAAGGGTGTCGCAAGCGTTATGATATCTTACTCGAGCTGGAATGGAGTTAAGATGCATGCTAATCGTGAACTTATCACCGGCTTCCTTAAGGGTACTCTCGGTTTCAAGGGTTTTGTCATCTCAGATTGGCAGGGTATTGACATGATTACTTCTCCCTCTCATTCCAATTACTCATACTCAATTATGAAAGGAATCAGTGCTGGCATTGATATGATCATGGTTCCATACAACTATACAGAATTCATCGAGGGTCTGACTTTCCGGGTGAAAAATAAAATCATCCCCATGAGCAGAATTGATGATGCTGTGAAGAGAATTTTGCGGGTTAAGTTCACAATGGGGCAATTTGAGAAACCGTTGGCTGATCTAAGACTGGTCAGCCAGCTCGGCAGTCAGGAACATAGAGAATTGGCTAGGGAAGCAGTGAGGCGATCTCTAGTGCTTCTAAAGAATGGTGAATGTGCTGAGAAGCCAATACTACCCCTTCCCAAGAAGACATCAAAAATTCTTGTAGCTGGAACTCATGCAGATGATCTTGGTTATCAGTGTGGTGGTTGGACCATTGAGTGGCAGGGACACAGTGGCAACAACCTCACACAAGGTACCACAGTTCTATCTGCCATAAGGAACACAGTTGCACCAGAAACCAGAGTAGTGTACAAGAAAAATCCTGATGCCAAGTTTATGAAGTCAAATAATTTCTCCCATGCCATAGTGATCGTAGGAGAACCACCCTATGCCGAAGGAGCTGGTGACAACCTAAACTTAACAATCCCTAAATCTGGCCGAAGAGTCATCAGAAATGTTTGTGGTGCATCGAAATGTGTTGTTTGCCTCATCACCGGCCGTCCTGTAGTGATCGAACCATATCTTTCCATTATAGATGCTCTTGTTGCAGCTTGGCTTCCAGGGACTGAAGGCCAAGGAGTTGCTGATGTTTTGTTTGGTGACTATGGCTTCACTGGCAAGCTTCCTCGCACCTGGTTCAAATCTGTGCATCAGCTGCCTATGAATGTTGGAGATCCAGATTATGATCCTCTCTTTGCTTATGGATATGGCCTCACTACACAACCCACCAATGCCAACTAG
Protein Sequence:
- >mrna03614.1-v1.0-hybrid|Fragaria_vesca|C2H2|mrna03614.1-v1.0-hybrid
MEKGEAEEKKRPIFRDIRRYYCEYCGNCRSKKSLIASHILAQHKDEMERDEGDEEVEVEKCNTCEECGASFNKPAYLKQHMISHSLEHWIPPKNSKMREGTDLNGPVPGGRPPVKLHQVTLNHTRPYVCTIDDCRSAYRRKDHLNRHLLQHQGKLFKCPIENCKSEFAFQGNVKRHVVELHSENCPSISVEGQKQHVCQEPGCGKVFQFASKLWKYEDSHVKLDSVEAFCSEPDCMKYFSNKQCLQDHIQSCHTHITCEICGNKEWKKNIRTHLHAHEEGVSSLEIKCEYEGCLHTFTKKLNLLQHVKAVHLQQKPFSCSFSGCSKTFSYKHVRDKHEKSGCHGDFEEADEQFRSRPRGGRKRMCPTVEMLVRKRVTPPDQFGPETEFLSQFFSQEEMAEILISLMGLLLLCICIEIMTMTAEAECMKYKDPNQPLNTRINDLLSRMTLEEKIGQMTQIDRSVASPEVMYKYKIGSVLSGGGSVPAKNASAETWIRMVNDFQNGSLSTRLAIPLIYGIDAIHGHNNVYKATIFPHNVGLGATRQRIGAATALEIRATGIHYTFAPCVAVCRDPRWGRCYESYSEDPRLVQAMTEIIPGLQGEIPANSRKGVPYVSGNDKVAACAKHYVGDGGTAMGINENNAVIDRHGLLSIHMPPYPSAIIKGVASVMISYSSWNGVKMHANRELITGFLKGTLGFKGFVISDWQGIDMITSPSHSNYSYSIMKGISAGIDMIMVPYNYTEFIEGLTFRVKNKIIPMSRIDDAVKRILRVKFTMGQFEKPLADLRLVSQLGSQEHRELAREAVRRSLVLLKNGECAEKPILPLPKKTSKILVAGTHADDLGYQCGGWTIEWQGHSGNNLTQGTTVLSAIRNTVAPETRVVYKKNPDAKFMKSNNFSHAIVIVGEPPYAEGAGDNLNLTIPKSGRRVIRNVCGASKCVVCLITGRPVVIEPYLSIIDALVAAWLPGTEGQGVADVLFGDYGFTGKLPRTWFKSVHQLPMNVGDPDYDPLFAYGYGLTTQPTNAN*