Information report for MELO3C002327P1
Gene Details
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Functional Annotation
- Refseq: XP_008439230.1 — PREDICTED: lysine-specific demethylase REF6
- TrEMBL: A0A1S3AXW7 — A0A1S3AXW7_CUCME; lysine-specific demethylase REF6
- STRING: XP_008439230.1 — (Cucumis melo)
- GO:0009741 — Biological Process — response to brassinosteroid
- GO:0009826 — Biological Process — unidimensional cell growth
- GO:0010228 — Biological Process — vegetative to reproductive phase transition of meristem
- GO:0033169 — Biological Process — histone H3-K9 demethylation
- GO:0035067 — Biological Process — negative regulation of histone acetylation
- GO:0040010 — Biological Process — positive regulation of growth rate
- GO:0045815 — Biological Process — positive regulation of gene expression, epigenetic
- GO:0048366 — Biological Process — leaf development
- GO:0005634 — Cellular Component — nucleus
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
- GO:0071558 — Molecular Function — histone demethylase activity (H3-K27 specific)
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Citrullus lanatus: Cla97C03G054490
- Cucumis sativus: Cucsa.391680.1, CsGy1G009140
- Gossypium arboreum: Cotton_A_09671_BGI-A2_v1.0
- Juglans regia: Jr02_01930, WALNUT_00020075-RA, Jr09_04290
- Populus trichocarpa: Potri.015G089000.1, POPTR_015G089000v3, Potri.012G092400.1, POPTR_012G092400v3
- Prunus avium: Pav_sc0000522.1_g100.1.mk
- Prunus mume: XP_008239384.1
- Prunus persica: Prupe.5G159200.1.p, PRUPE_5G159200
- Ziziphus jujuba: XP_015882347.1
Sequences
CDS Sequence:
- >MELO3C002327P1|Cucumis_melo|C2H2|MELO3C002327P1
ATGGCAGGCACAGCCATGGCCGCGGAGCCGACTCAAGAGGTACTTTCTTGGCTCAAAACCCTACCGTTAGCTCCTGAATATCACCCGACTTTAGCAGAGTTTCAAGATCCAATTTCATATATTTTCAAGATCGAAAAAGAGGCTTCTAAGTTTGGAATCTGTAAAATTGTACCCCCTGTTCCTCCTTCACCGAAGAAAACTGTAATTGTCAATTTCAATAAGTCGCTTGCAGCTCGTGCTGCCCCCTGTTCTGACTCGACTAATTCTAAGTCTCCGCCTACATTCACTACTCGACAACAGCAGATCGGGTTTTGTCCGAGGAAAACACGACCGGTTCAGAAATCAGTGTGGCAGAGTGGTGAGTATTATACATTTCAGCAATTTGAGGCTAAGGCGAAGAACTTTGAGAAAAGTTATTTGAAGAAATGTACGAGGAAAGGAGGGCTTTCGCCTTTGGAAATCGAAACGCTCTATTGGAGGGCAACTTTAGACAAGCCCTTTTCCGTGGAATATGCAAACGATATGCCTGGTTCAGCTTTTGTGCCAGTAAGTGCTAAAATGTTTAGGGAGGCAGGGGAAGGAACAACGCTTGGGGAAACGGCGTGGAACATGAGGGGTGTGTCTAGGGCGAAAGGGTCTCTGTTGAAGTTTATGAAGGAAGAGATTCCTGGAGTTACTTCGCCAATGGTGTATGTTGCCATGATGTTCAGTTGGTTTGCTTGGCATGTGGAAGACCATGACTTGCATAGTTTGAATTATCTGCATATGGGGGCGGGAAAGACATGGTATGGGGTACCTAGAGATGCTGCTGTGGCTTTTGAGGAGGTTGTAAGGGTTCAGGGATACGGAGGAGAAATTAATCCACTTGTAACTTTTGCTGTTCTTGGTGAGAAGACTACTGTGATGTCACCTGAAGTTCTAGTTAGCGCTGGAGTTCCATGTTGCAGGTTAGTACAAAATGCAGGTGAATTTGTTGTCACTTTTCCTCGAGCTTATCATACAGGTTTCAGCCATGGATTTAACTGTGGGGAGGCAGCCAATATTGCAACTCCGGAATGGTTAAACGTTGCTAAAGATGCTGCAATTCGTAGAGCTTCAATCAATTATCCTCCAATGGTCTCTCATTATCAGTTGCTATATGATCTTGCTTTAAGTTCCAGAGCTCCTCTGTGCTCTGGTGCGGAACCAAGAAGTTCACGACTAAAAGATAAAAGGAGGAGTGAAGGAGACACAGTTATAAAAGAGTTATTTGTACAGAATATTGTAGAGAATAACAGCCTGCTGGATAATCTTGGGGGAGGAGCTTCAGTTGTACTTCTTCCCCCAGGTTCTTTAGAATCTATTTATTCGAGACTGCGTGTTGGATCCCACTTGAGGTCAAAACCTAGATTTCCTACTGGTGTTTGCAGTTCTAAGGAAGAAACCAAATCTCCTCAAAGTTTTGATTATGATAATCTCGCACTAGAAAATAGCCCGGGAATTAATCGAGTGAAAGGTTTCTATTCGGCGAATGGGCCATATTCGACTCTATCTGAAAGAAGCACGGACAATTTATGTGCTTCAAGTTCAAGGCCTTTGAATGCCAACAATGAACGAGGTGGTAATGTTCAAAGCAATGGATTATCAGATCAAAGACTGTTTTCTTGTGTCACATGTGGTATTTTAAGTTTTGCCTGTGTAGCCATCATCCAACCCAGAGAACAAGCTGCTAGGTACCTTATGTCAGCTGACTGTAGCTTCTTCAATGATTGGGTTGTTGGTTCCGGGATAGCCAGTGAAGGGATTTCTACTAAAGATCGGCATCCAGTTAGCTCTCAGCAGATTAGTAATAGTGGAAAAAGAGATAAGTGTGTCTCTGATGGATTGTATGACATCCCAGTCCTGGCTGTCAATCGACAGCTTCAGTTAGCAGGCAAAAGTTATGAAGCAGATTTAAATACTGAAAAACGAAATGAGACTTCTGCCCTTGGCATGCTTGCATTGACTTACGGACATTCTTCTGATTCTGAGGACGACAATGCTGAAGCAGATGCTGTTTTAAATGTGGATGATGCTAAACTAATGATTTGTTCTTCAGAAGAACAATATCAGTTTGAAAATTCTGGCCTTACTTCTAGTGAATATAGCAAGAACACTGCAATTTTGAATCACGACCCCTCGTCATTTGGTGTTAACTCTGCAGATCATATGCAATTTCAAGTCAACGACTATGAAGAATTTCGACGAGCTGATTCCAAAGACTCGTTCAATTGTTCTTCTGAGTCTGAAATGGATGGCATAGGTTCAACCAAGAAAAATGGTTTGTCAACTAGATATCAAGATTCTCATGTGAATGGCAGATCTTCCTTAGACGCTGATACTGAAAAACCAGTGTTTGACAAGTCCACTGAAACAGTCGAGACTGAGAATATGCCATTTGCTCCAGATATCGATGAAGACTCCTCTAGATTGCATGTATTTTGTCTAGAGCATGCAAAAGAAGTGGAACAACAACTTCGACCAATTGGAGGAGTGCACATTCTTTTACTTTGTCATCCAGTTTCTTCTGACTATTATGCCAAACTTGAAAATTTTGCTGCATCTAACATTGCCTGCTTCATGAAAAATTTGTTAGACTATCCGAAGATGGAGGCAGAAGCAAAACTGGTGGCACAAGAATTAAGTATGAGCCATCTGTGGACTGATACGATATTCAGAGATGCCACCCAAGATGAAGAAAAGAGGATTCAGTTAGCTTTAGATTGCGAGGAAGCAATTCCGGGTAATGGAGATTGGGCTGTAAAATTGGGAATAAATCTCTTTTATAGTGCCAACCTTAGTCACTCTCCTCTATATAGTAAGCAGATGCCATACAACTCTGTTATTTATAATGCATTTGGCCGTAGTACTTCTGCCAACTCTTCTGGTAAGCCAAAAGTCTATCAAAGGAGGACTGGAAAGTTGAAAAGAGTAGTTGCAGGGAAATGGTGTGGGAAAGTCTGGATGTCCAATCAAGTCCATCCTTTGCTGGCGAAGAGAGATCCTCAAGAAGAAGATGTAGACATCTTTCCTTCTTGGACAATGTCAGATGAGAAGGTTGATAGGAAATCAGCAAATATCCAGAAAATTGAGACTGTTAAGGTAAATAGAAAGTCTGCTGGCAAGAGAAAAATGAATTATGGGCGTGGAACAACTAAGAAAGCCAAACTTGTAGAGTCAGAGGACATGGTTTCAGATGCTTCAGTTGAAGATTGTATCCATCGGCATCATAGTATTCTACGGAACAAGCAATGCAAATTTGTTGAGAGCAATGATCCAATGTCGGATGATTCTGTGGAGGATGATTCTTCTAGAAAACATGGAGTTCCCGTCAGCAAGGGAACGCCATATTTTGTTACAGATGATACCGGTTCAGATGATTCTCTTGGAGATCGTCATACTCCGCACAGAGGGTTCTCTGGATTCAAGCTGCCCAGATGGGGTGAGATAGAACCTTCAGTTTCTGATGATTCCTTAGAGCACTATTCTTCTCAGCATCGTGGGAAAAATATTAAAAGCAGGACAGAAAAATACATTGAGAGACAAGATACACTTTCAGATGAGTGTCTGGAGAGTGGCTCTCTTAAGCAATATAGAAGAATTCCGAAAAGCAAACAAACCAAAGTTTTTAAAAAGAATGCCATTTCACACGATATACGAGATGATAGTTTTCTTTGGCATCATCAAAGGCCCTCCAGAATCAAGAAGGCCAAATTTATTGAGAGTGAAGATGCAGTTTCAGAGCACTCACTAGAAAACAATTCTCATCAGCATAGAAGTATGCCTCAAATAAAACCAGCCAAGCACACTGCGTGGGAAGATGCATTTTCAGATGGTCCAGATGAAGATGATAATTCTCTTCTGCATCATCGGAATGTTAGAAGTAACATGCAATTCAGAGAAATTACATCAGACGATCAGCTTGATGATAGTGCTAATCAATGCAGTAGGAGGGTACTCCGGAGGAAGCCGGTTAAGACAGAGACAATTTCGCAAATGAAACAAGAGATCCTGCGACCTGCAAAGCGAGGAGCCTCTCAGACTTTGAAAGAAGAATTTGCTCAATCTTTAAAACGTGGAGGCCGCCATTCATTAAAATTAGAGACCCCTCAGCCAAAAATACAGCATGCCACAAATCGACGTGGTAAGCAAACTAAGAGGAATGGAAAATCGACTGATTTAGAATCAGAAGAAGATCAACTAGGTGGACCTAGTACACGTCTTAGAAAAAGAACTCCAAAACCTACTCAACTTTCAGAAGCAAAAGTGAAAGATAAAAAACCAGTTGCCAAGAAAAAGATGAAAACTGGTTCATCTTTGAAGACTCCAGCAGGCCATAGAGATTCAAAAGCAAGGGATGAGGAATCAGAATATCTTTGTGACATCGAGGGTTGCAATATGAGTTTTGGTACAAAACAAGAACTTGCCTTACACAAACGAAATATCTGTCCTGTCAAGGGGTGTGTGAAGAAGTTTTTCTCACATAAGTACCTTGTGCAGCACCGTCGAGTCCACATGGACGACCGTCCCCTCAAATGTCCATGGAAGGGCTGCAAGATGACTTTCAAATGGGCATGGGCACGAACAGAACATATTCGTGTCCATACAGGTGCTCGACCTTATGTTTGCGCTGAACCTGGATGTGGTCAGACATTCAGATTTGTTTCGGATTTCAGTCGTCACAAGCGGAAGACTGGACATTCGACAAAGAAAGGTAGAGGTTAA
Protein Sequence:
- >MELO3C002327P1|Cucumis_melo|C2H2|MELO3C002327P1
MAGTAMAAEPTQEVLSWLKTLPLAPEYHPTLAEFQDPISYIFKIEKEASKFGICKIVPPVPPSPKKTVIVNFNKSLAARAAPCSDSTNSKSPPTFTTRQQQIGFCPRKTRPVQKSVWQSGEYYTFQQFEAKAKNFEKSYLKKCTRKGGLSPLEIETLYWRATLDKPFSVEYANDMPGSAFVPVSAKMFREAGEGTTLGETAWNMRGVSRAKGSLLKFMKEEIPGVTSPMVYVAMMFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVQGYGGEINPLVTFAVLGEKTTVMSPEVLVSAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLNVAKDAAIRRASINYPPMVSHYQLLYDLALSSRAPLCSGAEPRSSRLKDKRRSEGDTVIKELFVQNIVENNSLLDNLGGGASVVLLPPGSLESIYSRLRVGSHLRSKPRFPTGVCSSKEETKSPQSFDYDNLALENSPGINRVKGFYSANGPYSTLSERSTDNLCASSSRPLNANNERGGNVQSNGLSDQRLFSCVTCGILSFACVAIIQPREQAARYLMSADCSFFNDWVVGSGIASEGISTKDRHPVSSQQISNSGKRDKCVSDGLYDIPVLAVNRQLQLAGKSYEADLNTEKRNETSALGMLALTYGHSSDSEDDNAEADAVLNVDDAKLMICSSEEQYQFENSGLTSSEYSKNTAILNHDPSSFGVNSADHMQFQVNDYEEFRRADSKDSFNCSSESEMDGIGSTKKNGLSTRYQDSHVNGRSSLDADTEKPVFDKSTETVETENMPFAPDIDEDSSRLHVFCLEHAKEVEQQLRPIGGVHILLLCHPVSSDYYAKLENFAASNIACFMKNLLDYPKMEAEAKLVAQELSMSHLWTDTIFRDATQDEEKRIQLALDCEEAIPGNGDWAVKLGINLFYSANLSHSPLYSKQMPYNSVIYNAFGRSTSANSSGKPKVYQRRTGKLKRVVAGKWCGKVWMSNQVHPLLAKRDPQEEDVDIFPSWTMSDEKVDRKSANIQKIETVKVNRKSAGKRKMNYGRGTTKKAKLVESEDMVSDASVEDCIHRHHSILRNKQCKFVESNDPMSDDSVEDDSSRKHGVPVSKGTPYFVTDDTGSDDSLGDRHTPHRGFSGFKLPRWGEIEPSVSDDSLEHYSSQHRGKNIKSRTEKYIERQDTLSDECLESGSLKQYRRIPKSKQTKVFKKNAISHDIRDDSFLWHHQRPSRIKKAKFIESEDAVSEHSLENNSHQHRSMPQIKPAKHTAWEDAFSDGPDEDDNSLLHHRNVRSNMQFREITSDDQLDDSANQCSRRVLRRKPVKTETISQMKQEILRPAKRGASQTLKEEFAQSLKRGGRHSLKLETPQPKIQHATNRRGKQTKRNGKSTDLESEEDQLGGPSTRLRKRTPKPTQLSEAKVKDKKPVAKKKMKTGSSLKTPAGHRDSKARDEESEYLCDIEGCNMSFGTKQELALHKRNICPVKGCVKKFFSHKYLVQHRRVHMDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSTKKGRG*