Information report for MDP0000321222
Gene Details
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Functional Annotation
- Refseq: XP_028949414.1 — transcription factor IIIA-like isoform X1
- Swissprot: Q84MZ4 — TF3A_ARATH; Transcription factor IIIA
- TrEMBL: A0A498HWX8 — A0A498HWX8_MALDO; Uncharacterized protein
- STRING: XP_008339227.1 — (Malus domestica)
- GO:0006412 — Biological Process — translation
- GO:0005730 — Cellular Component — nucleolus
- GO:0005840 — Cellular Component — ribosome
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0003735 — Molecular Function — structural constituent of ribosome
- GO:0008097 — Molecular Function — 5S rRNA binding
- GO:0046872 — Molecular Function — metal ion binding
- GO:0080084 — Molecular Function — 5S rDNA binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Citrus sinensis: orange1.1g048459m
- Gossypium arboreum: Cotton_A_32041_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A05G3867, Gh_A05G2341, Gh_D05G1175, Gh_D05G2606
- Juglans regia: WALNUT_00027680-RA, WALNUT_00031458-RA
- Manihot esculenta: Manes.02G195200.1.p, Manes.02G205100.2.p, Manes.02G205100.1.p
- Prunus mume: XP_008219031.2
- Prunus persica: Prupe.1G551600.1.p
- Pyrus bretschneideri: Pbr016404.1, Pbr000874.1
- Ricinus communis: 29967.m000088
- Ziziphus jujuba: XP_015867533.1
Sequences
CDS Sequence:
- >MDP0000321222|Malus_domestica|C2H2|MDP0000321222
ATGGATAAAGGGGCAGGAGAGAAGGAGGGGCCTATTGTCAGAGACATAAGGCGGCATTACTGCGACTACTGTGGCATCTGCAGGTCCAAGAAGTCTCTCATYGCTTCTCACATTCTCTCACACCACAAGGAGGAGATGGAAATGGCTGACGGTGATGGAGGTGGGGAKGTTGGGGAAGAAAATTCCAATACTTGTGAAGAATGTGGTACCACTTTCAAGAAACCTGCACATCTCAAGCAGCACCTGCAAAGTCATTCCCTTGAGAGGCCATACATTTGTTCAGTGGATGACTGCCATTCCAGCTACAGACGAAAGGACCACTTGACCCGCCATCTMCTTCAGCACCAAGGGAAACTTTTTAAGTGTCCAGTTGAGAACTGCAATCGTGAATTTGTYTTCCAAGGTAACATTAAGAGGCATGTCAATGAACTTCACATTGAGGATTGCCCTTCAGCTGATGGTGGAGYGCAGAAGCAGCATGTATGCCAGGAAATTGGTTGTGGAAAGGAGTTTAGATATGCTTCAAGGCTGCGGAAGCATGAGGAATCCCATGTTAAGCTAGAYACAGTGGAGGCATTCTGCTTTGAACCAGGCTGTATGAAACACTTTACCAATGATCAATGCCTTAAGGTCCATATCCAGTCCTGCCACCAACATACTACCTGCGAGATATGTGGGGCCAAGCAGCTGAGACAAAATATGAAAAGGCATCTTCTCACACATGAAGRGAGARGTTCAATAGAAAGAATTAAATGYGATTATAAGGGTTGTCTTCGCACWTTTACAACTAAATCGAATCTCTMTAAACATGTGAAAGCKGTACACCTTGAGCATAAACCTTTTGTCTGTAGCTTCTCGGGTTGTGGCATGAGATTTGCATACAAGCATGTGAGAGATAACCATGAGAAGACTGGATGTCAYGTCTATACCCATGGGGATTTTGAAGAGGCTGATGAGCAATTCCGGTCAAGGCCAAGGGGTGGGCGTAAGAGACAGTGCCCCGACATACCAATGTTGGTTCGGAAAAGGGAAATTTTGATGGTCTCTGGATCCGTTCATCGTCAAAGMGCTCGAGTGTTTAGGTTCTGTWGTTTTGGAAAGGTAGTCYGGATTACACTGTTTGAGTTGGCATGTMTGCGAGAGTGCCGAGAGATGGTGACAATAATATCTTGTTCAGCRGCTCCTCCATCAAGCGTGTGTGGGTCGCTCAGCCTCTCCTCCTCCGGGTTGCTTCCAACTCGGTCGACTCAGCTTTCATGGGTTTCTTCCTTTCCTCTGATTAACATCTCCATAGCAGACCCTCCCRCTCCCGCACTGAGCAGGAATTCTGTTGTTCGAGCTGCATGGACCCGGAGATCTCGAGGTGAAGCTGCAAAGAAGCCTAACAGGAAATCCTGGAAACAGAAGACTGATATGTATATGAGGCCATTCTTACTAAATGTTTTCTTTTCGAAAAAATTTATCCACGCAAAAGTRATGCATCGGGGAACSAGCAAAGTGATATCAGTTGCTACCACCAATGCCAAGGATCTTCGGAGCAACTTACCTTCACTCACAGATCACAACGCGTGCAGAGTTATAGGGCGGCTTATTGCTGAGCGGTCCAAGGAAGCTGATGTATATGCATTGTCTTATGAGGCCCGAAAAGGTGAACGGATTGAAGGTAAGCTTGGGATTGTTCTTGATACCATTAAAGAGAACGGGATCATGTTTGTTTAG
Protein Sequence:
- >MDP0000321222|Malus_domestica|C2H2|MDP0000321222
MDKGAGEKEGPIVRDIRRHYCDYCGICRSKKSLIASHILSHHKEEMEMADGDGGGXVGEENSNTCEECGTTFKKPAHLKQHLQSHSLERPYICSVDDCHSSYRRKDHLTRHLLQHQGKLFKCPVENCNREFVFQGNIKRHVNELHIEDCPSADGGXQKQHVCQEIGCGKEFRYASRLRKHEESHVKLDTVEAFCFEPGCMKHFTNDQCLKVHIQSCHQHTTCEICGAKQLRQNMKRHLLTHEXRXSIERIKCDYKGCLRTFTTKSNLXKHVKAVHLEHKPFVCSFSGCGMRFAYKHVRDNHEKTGCHVYTHGDFEEADEQFRSRPRGGRKRQCPDIPMLVRKREILMVSGSVHRQXARVFRFCXFGKVVXITLFELACXRECREMVTIISCSAAPPSSVCGSLSLSSSGLLPTRSTQLSWVSSFPLINISIADPPXPALSRNSVVRAAWTRRSRGEAAKKPNRKSWKQKTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRSNLPSLTDHNACRVIGRLIAERSKEADVYALSYEARKGERIEGKLGIVLDTIKENGIMFV