Information report for MDP0000248957
Gene Details
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Functional Annotation
- Refseq: XP_028952517.1 — plant UBX domain-containing protein 2-like
- Swissprot: Q9ZU93 — PUX2_ARATH; Plant UBX domain-containing protein 2
- TrEMBL: A0A498HN39 — A0A498HN39_MALDO; Uncharacterized protein
- STRING: XP_009351535.1 — (Pyrus x bretschneideri)
- GO:0006281 — Biological Process — DNA repair
- GO:0003677 — Molecular Function — DNA binding
- GO:0005515 — Molecular Function — protein binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Citrullus lanatus: Cla003947
- Cucumis melo: MELO3C005281P1
- Cucumis sativus: Cucsa.012130.1
- Glycine max: Glyma.08G042900.1.p
- Gossypium arboreum: Cotton_A_29883_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A03G1033, Gh_D02G1425
- Juglans regia: WALNUT_00004242-RA
- Lotus japonicus: Lj2g3v3034090.1, Lj4g3v3112910.1
- Manihot esculenta: Manes.15G133200.1.p
- Medicago truncatula: Medtr8g104930.1
- Prunus mume: XP_008221449.1
- Prunus persica: Prupe.1G331600.1.p, Prupe.1G331600.2.p
- Pyrus bretschneideri: Pbr012104.1
- Ziziphus jujuba: XP_015895415.1
Sequences
CDS Sequence:
- >MDP0000248957|Malus_domestica|C2H2|MDP0000248957
CCGGAAAAGCGAGCAGCACAGAGATCCGATGGCGTTGGAGTGGGTTGTCCTCGGGTACGCCGCTGCCGCGGAGGCGATCATGGTGCTCCTCCTCACGATCCCCGGCCTCGACGGCCTCCGCAAGGGCCTCGTCACTGTCACCCGCAACCTCCTCAAACCGTTGCTCTCAGTGGTGCCGTTGTGCCTCTTCTTGCTCATGGACATCTACTGGAAGTACGAGACTCGCCCGAGCTGCGAAGGCGACTCCTGCACTCCCTCGGAGTACCTCCGCCACCAGAAGTCGATCATGAAGAGCCAGCGCAACGCGCTCTTGATCGCCGCCGCCTTGATCTTCTACTGGCTCCTCTACACCGTCACCCACCTCGTTGTCCGCATCGAGCAGTTGAACCAGCGCGTCGAGCGCTTGAAGAATCGCGACTGAATCCACTCGGAAAAGAAAAACAAAAACGCGCCTGTGAAGGTCGCAAGGCCGTTTGGCGGGGAAAATTATCCAACGAACACCGGCTCCTCTTCTTCTTCTTCTTCTTTCAATACATCGACATGAAAGACAAGTTCAAGGGCTTCATGAAGAACACCTTCTCGTCTTCGTCCTCCGGTAAATTCAAGGGCCAAGGCCGAGTCTTGGGATCGTCTTCTTCCTCTGGCCCCGCCGATTCGGTCCTCATTCGCCCTAAGCAGACTCCCCATTCCAATCCCAAACCCGTCCCGAATTCGAATTCAAATTCAAATTCTTCGGTCGCCTCCCCAAATCCCAAGCCTTCGCCACAGAAAACGCAGATTATTCATCAGGAGAAAGCGCAAATTCCTGATCAGAGCCAGGCGGAGCCGTCGTTCAATTCGAAGCCTGATCGAAAAACAGAAACTGGGTTTGATCCGTTTGACGCTCTGATCACGCCGGGGAAGAGATCCCAGAACGGGTTTACGCTAAATGTCTTCGAATGTCCGATTTGCGGGCAATCGTTTAGGTCGGAAGACGAGGTCTCCGTACATGTAGATAGCTGTGCTAATACTTCGGTGGAGAACAAAAGTGTGGAGGGTGTTGGCGTTTCGCGGTCGCCGGATAACGGGTCTGAGTCGTCGAGGAGCGAATTGGAAGCTCGCATTGGTACATTTTCTTCAGGAAATCCGGCTGCCGGGTCAGTTGAGGTTGTTCTGAGGCTGTTGAGGAATATAGTTAAGGAACCGGAGAACGTGAAGTTTAGAAGGATTCGGATGAGTAATCCGAAGATAAGGGAGTCCCTTGGTGAGGTTGTGGGAGGCATTGAGTTGCTGGAGTTTGTGGGGTTTGAATTGAAAGAGGAGGATGGGGAGATGTGGGCGGTAATGGAGGTTCCAAGGGAAGAACAAATTAATTTGATGAAAAGGGGAATAGCATTACTGGAACCGCCGAAGGTACAAGAAGTAGATATTTCGGCATCCATTGCTTCATTGAAGGTGGATGAACCAGTTGAACCAAGGAAGGTTGACCGGCAGACGAGGGTCTTCTTTTCGGTCTCTGAAAGTGTGGCAGCAAGAATTGAGGTACCAGCATCTTTCTACAACCTCTCAGCTACGGAGCTGAAAAGAGAAGCTGAAATGAGAAAGAAGAAGATTGAAGATTCACAGATGTTGATCCCAAAGTCATTCAAGGAAAAGCAGGCAAAAGCTGCTAAAAGGAGATACAGAAAAACTGTTATCCGGATCCAGTTTCCCGATGGAGTGGTGCTCCAGGGTGTTTTTTCTCCTTTGGAGCCAACCAGCTCTTTGTACGAGTATGTGAGCTCAGCACTGAAAGAGCCTAGTTTGGAATTCGAGCTGTTAAATCCTGTAGCCCTCAAACGGCGGGTGATCCCTCATTTTCCAGCAGCAGGAAAGAAAGCAGCAACACTAGCTGATGAGGATCTGATGCCCTCGGCTCTTGTCAAGTTCAAACCCATCGAAACAGATTCGGTTGTCTTCACAGGGCTGTGTAATGACCTCCTTGAGATAAGTGAACCACTTACGAGCGGTTCAGCTGCTGCTCCTGTGTAA
Protein Sequence:
- >MDP0000248957|Malus_domestica|C2H2|MDP0000248957
PEKRAAQRSDGVGVGCPRVRRCRGGDHGAPPHDPRPRRPPQGPRHCHPQPPQTVALSGAVVPLLAHGHLLEVRDSPELRRRLLHSLGVPPPPEVDHEEPAQRALDRRRLDLLLAPLHRHPPRCPHRAVEPARRALEESRLNPLGKEKQKRACEGRKAVWRGKLSNEHRLLFFFFFFQYIDMKDKFKGFMKNTFSSSSSGKFKGQGRVLGSSSSSGPADSVLIRPKQTPHSNPKPVPNSNSNSNSSVASPNPKPSPQKTQIIHQEKAQIPDQSQAEPSFNSKPDRKTETGFDPFDALITPGKRSQNGFTLNVFECPICGQSFRSEDEVSVHVDSCANTSVENKSVEGVGVSRSPDNGSESSRSELEARIGTFSSGNPAAGSVEVVLRLLRNIVKEPENVKFRRIRMSNPKIRESLGEVVGGIELLEFVGFELKEEDGEMWAVMEVPREEQINLMKRGIALLEPPKVQEVDISASIASLKVDEPVEPRKVDRQTRVFFSVSESVAARIEVPASFYNLSATELKREAEMRKKKIEDSQMLIPKSFKEKQAKAAKRRYRKTVIRIQFPDGVVLQGVFSPLEPTSSLYEYVSSALKEPSLEFELLNPVALKRRVIPHFPAAGKKAATLADEDLMPSALVKFKPIETDSVVFTGLCNDLLEISEPLTSGSAAAPV