Information report for MDP0000161241
Gene Details
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Functional Annotation
- Refseq: XP_028945083.1 — zinc finger protein GAI-ASSOCIATED FACTOR 1-like
- Swissprot: Q8GYC1 — IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
- Swissprot: Q9SCQ6 — IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
- TrEMBL: A0A498IM74 — A0A498IM74_MALDO; Uncharacterized protein
- STRING: XP_008386763.1 — (Malus domestica)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Cajanus cajan: C.cajan_10292
- Citrus sinensis: orange1.1g010444m
- Fragaria vesca: mrna24910.1-v1.0-hybrid
- Gossypium arboreum: Cotton_A_13948_BGI-A2_v1.0, Cotton_A_08293_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A11G1062, Gh_A08G0678, Gh_D11G1217, Gh_D08G0786
- Manihot esculenta: Manes.05G065500.1.p
- Populus trichocarpa: Potri.T034600.1
- Prunus mume: XP_016650372.1
- Prunus persica: Prupe.8G255800.1.p
- Ricinus communis: 29647.m001996
- Ziziphus jujuba: XP_015891908.1
Sequences
CDS Sequence:
- >MDP0000161241|Malus_domestica|C2H2|MDP0000161241
ATGTCAAATATTACAGGTGATGTTGAAGAAGGAAGCTTCTCCTCAGGGAATAATACTGGAGAATTAGAAGTTCGTCAAGACCAAAAGCAGCAAGAAAACCACTTGCATCGCTCCAGCTCTGGCGGTGCTTCCGGTGCCCAAAGCAACAATCCTAGCGCAGAAGTTATTGCACTATCACCAACAACCCTAATGGCAACGAACCGATTTGTGTGTGAGATCTGCAACAAAGGGTTTCAAAGGGATCAAAACCTTCAGTTGCATCGTCGAGGCCATAACCTTCCATGGAAGCTCCGGCAGAGAACCACAACTGAGGTTAGGAAAAGGGTCTACATATGTCCCGAGCCGACGTGTGTTCACCATAACCCAGCTCGGGCGCTAGGAGATCTCACCGGCATTAAGAAGCACTTCAGCCGGAAACATGGGGAGAAAAAATGGAAATGTGACAAGTGCAGCAAGAAATATGCAGTGCAGTCGGATTGGAAGGCGCATCAAAAGACCTGCGGCACAAGGGAGTATAAATGTGACTGTGGAACCATCTTTTCCAGGAGGGATAGCTTCATCACCCACAGAGCTTTTTGTGACGCATTGGCAGAAGAAAACAACAAAGTAAACCAAATGTCTATGCCACATGATCAGCTCATATCATCAACGGCCATGAACACCAGCACCTCCACCATGGGAGGAGGAGGAGTCTCCGAATTCCTCAATTACGATATTAACCCCAACAAAAACAAGCTTCCTGAAGATCTGGTCCCAATGCCATTCAAATCCATGAACATGAACATGAACATTCCAGGTGGTGGTGGAGGACCAGGCATGTTCTCAAGCACCGCCGGTTCGCTCTTTGGCGGGCCAAGAAGCGTGTCTTCCACCTCGGCCTCCAGCCTTCAGCTAAGTTCCAACAACAACAACAACAGCTCATCAGGGTTCAATTACCTTCACAACCAAGAAATCAAAAACGGAGGCAGCAGCCTAAGTAGTATTACTGGGGCTGCTCAAATGTCAGCCACCGCCTTGCTTCAAAAAGCCGCCCAAATGGGAGCCTCCGCAAGCAACTCTACGATCAACTCGCCGATGATGCAGAAGAGCTTTGTTAGCAGCATGGCAGGTCCTGATCACGGACACCTCTCTAGCCCGAATTCCCTTCTCAACAATAATATTCGACCCCCACCATCGTATGATCATCAACCTCACCACTTCCAACAACAACCTCAAGCGTCTGATCCTCTATCATATAATTCACACAACATGATGGGAGGGTTCACTAACCAGCTCATGCAAAAGGGCCCACAAGAAATGTCACAGCTGTTTGATCATCACTCCAACAACTCAGCCGCTAGCTCGGCAATGACAGACATGGGACTCTTCAGCCAAGTCTTCATGGGGATCGATGGCGATCCCCACCAGCACCATCAGAGCCACCAGGCATTGTTGAAGAATTTCGAACAAGACCATCAGAACATTAATAGCCCTACCAACAATTCCAGTAGTAGTATTTCGACGCATCGAATGAACAGCGCGCTGGGGCCTTCAACGACGCTCGATCTGCTGGGTATCGGAGGGTCGAGGCCGCCAAACTTGCATGAGCAGCACCACCACCACCACAACCAGCAACAAAGGCTGGACTTGGAGGCAATGAGTCAGCACAGATTGCCGGCAATGATGAACCCTTTTCAGCAACAGCAACAACGCTCGCATGGAGATTCGGCTATGGAAAAACAGATTTGGGATGTTTGA
Protein Sequence:
- >MDP0000161241|Malus_domestica|C2H2|MDP0000161241
MSNITGDVEEGSFSSGNNTGELEVRQDQKQQENHLHRSSSGGASGAQSNNPSAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTTEVRKRVYICPEPTCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKVNQMSMPHDQLISSTAMNTSTSTMGGGGVSEFLNYDINPNKNKLPEDLVPMPFKSMNMNMNIPGGGGGPGMFSSTAGSLFGGPRSVSSTSASSLQLSSNNNNNSSSGFNYLHNQEIKNGGSSLSSITGAAQMSATALLQKAAQMGASASNSTINSPMMQKSFVSSMAGPDHGHLSSPNSLLNNNIRPPPSYDHQPHHFQQQPQASDPLSYNSHNMMGGFTNQLMQKGPQEMSQLFDHHSNNSAASSAMTDMGLFSQVFMGIDGDPHQHHQSHQALLKNFEQDHQNINSPTNNSSSSISTHRMNSALGPSTTLDLLGIGGSRPPNLHEQHHHHHNQQQRLDLEAMSQHRLPAMMNPFQQQQQRSHGDSAMEKQIWDV