Information report for MDP0000152443
Gene Details
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Functional Annotation
- Refseq: XP_008374335.2 — LOW QUALITY PROTEIN: lysine-specific demethylase REF6
- TrEMBL: A0A498JKN1 — A0A498JKN1_MALDO; Uncharacterized protein
- STRING: XP_008346713.1 — (Malus domestica)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Cucumis sativus: Cucsa.391680.1
- Fragaria vesca: mrna09903.1-v1.0-hybrid
- Juglans regia: Jr02_01930, WALNUT_00020075-RA, Jr09_04290
- Populus trichocarpa: Potri.015G089000.1, POPTR_015G089000v3
- Prunus avium: Pav_sc0000522.1_g100.1.mk
- Prunus mume: XP_008239384.1
- Prunus persica: Prupe.5G159200.1.p, PRUPE_5G159200
- Pyrus bretschneideri: Pbr036965.1
- Rosa chinensis: RchiOBHm_Chr7g0191461
- Ziziphus jujuba: XP_015882347.1
Sequences
CDS Sequence:
- >MDP0000152443|Malus_domestica|C2H2|MDP0000152443
ATGCCGAGAGAGACTTCAGCTCTTGGTCTATTAGCTTTGAATTATGGAAATTCATCTGACTTGGAGGAAGATCAGGTTGAAACAGATGCTCCTGTCTGTTCTGATGAACCAAAGGTGACAAACTGTTCTTTGGAAAGTAGATATAGAGACCAAAGTGCTAGTCTTCCTTCTGGGGGTACAAGTGGGGTTCACAGTCCCTCGTCACCAGGATCTGATTGTGAGAATGAACTTCGTCTCCAAAATTTTGATCACTATGCTACAGATGGACGTAAAATAGCAAATTTCAAGGATACCGGCCATCAAGACATTGACAGCTCTGCTGATTTCAGAACTAATAATTATGCTTCCACAGCAACAGGTTTTGGTAAGGCTATCGTACCAATACAGAAAACAAACACGTCATGTCATCCAGGATGCGATGAAGACTCTTCTAGAATGCATGTCTTCTGCCTTGAGCATGCTGTAGAGGTTCAGCAGCAGCTTCGTTCAATTGGAGGTGTCCATATTTTACTCCTTTGTCATCCAGACTACCCAAGGATAGAGGATGAAGCCAAATCAATGGCAGAAGAGCTGGGAATAAGTTATCTCTGGAATGATATGGCATTCATGAATGCCACCAAGGAAGATGAGACGAGGATTAAGTTAGCTCTGGATAGCGAGGATGCCATTGCTGGGAATGGGGACTGGGCTGTAAAGTTGGGGATCAATCTCTTCTACAGTGCCAGCCTTAGCCGCTCTCATCTTTATAGTAAGCAGATGCCATACAATTCTGTTATATACAAAGCATTTGGCCGGAGCTCTCCTGCTAGTTCGCCAACAAGAATTGATGTCTATGGGAGGAGAGGTGGCAAGCCAAAAAAGGTAGTGGCAGGGAAATGGTGTGGTAAAGTATGGATGTCAAACCAAGTTCATTCTTTTCTAGTAAAAAGGGATCCTGAGGAAGAAGTAGAAGTAGCAGAAGATGAAGAAGAGCGGCCCTTCCGTGCTTGGGCAATGCCAGAAGAGGATGATGAGGTAAAATCAGAAATCACACGCAGAACTGAGAAGACAGTTAAGAAGTATGCTAGGAAGAGGAAAATGACTGCAGATACTCGGACAGCCAAGAAAGCAAAATGTTTTGAGAAAGAGGATGCAGTTTCAGATTATTCATTAGATGACAACTCTCATCAGCAGCAAAGGAGGCTTCCTAAGAGCAAGCAAGCCAAACATATTGAGAGAGGTCGAACCAAGAAAGCCAAGGGTATTGAGACACATGATGCATTTTCAGATGATWCAATGCAAGAGGATGATTCTCATCAGCAAAATGGGAGGATTCTTCACAGCGAGCAAGTTGAGTATATTGAGAGAAGTGATGTTTCAGATGATTCTGTGGGAATTGATTCTCATCAGCAGCATAGGAGGACTGCTAAAAGTAAGCAATTCAAGCCAGTAGAAACAGATGTGGTTTCAGATGATTCGTTTGAGGGTAGTTCTCATCAGCCGCGGAGGGTCCTTAGAAGCAAGACAACTAAATGCACTGGGAGAGAAAATTTGATTTCGGAGGATGTTCGCGGGTTTAGTTCTCATCAGCAACGAAGGAGCATTTCTAGAAGCAAGCAGGCCAGAGCCAGATTCATGGAGAGAGAAGATACCTCTCTGGACGAAACACCGGAAGATACTTCTCATCAGCATAAGAGAAATCTTCGAAACAAGCAAACCAAACCAGAGACCCGTGGGAAAATGAGACAAGAAACCTCTCGCCAAGTGAAACAAGGAACTGCTCCTCTTGTGAAACAAGGTACTCGCACTCTGAGAAATCAACAAACCCCTCAGMAAAYGAAGAAGCAGACACCTAGGCTCCGAAATAATCAATCTGAGCAGAATAATCAGTCTGAGCAGAACAGCTTTGATTTATATGCTGAAGATGAGACAGAAGGTGGGCCTAGCACGCGCCTTAGAAAAAGAGCTCCTAAGCCCTCAAAAGTCCCTGGAACCAAATCAAAAGAGCAGCAACAAACTGCTAGGAAAAAGGCAAAGAATGCTTCAGCAGGGAAGACTCAGGCTGGCCGAAATGAAACAAAGAGGGAAGAGGATGGAGAATTCGTGTGTGATCTTGAGGGGTGTACCATGAGTTTTGCCTCGAGGCATGAGCTTTCCCTCCACAAAAGAAACATATGTCCAGTCAAGGGGTGCGGAAAGAAATTCTTCTCGCACAAGTATCTGGTGCAACATCGCCGAGTTCACACAGATGATCGCCCCCTTCGGTGTCCTTGGAAGGGCTGCAAGATGACATTCAAGTGGGCATGGTCTCGCACCGAGCACATTAGGGTTCACACAGGTGCTCGTCCCTATGTATGCGCTGAACCAGGGTGTGCACAGACCTTCCGATTTGTGTCAGATTTCAGCCGTCATAAGCGCAAGACCGGGCATTCAGCGAAGAAGAGTAAGAAGTGA
Protein Sequence:
- >MDP0000152443|Malus_domestica|C2H2|MDP0000152443
MPRETSALGLLALNYGNSSDLEEDQVETDAPVCSDEPKVTNCSLESRYRDQSASLPSGGTSGVHSPSSPGSDCENELRLQNFDHYATDGRKIANFKDTGHQDIDSSADFRTNNYASTATGFGKAIVPIQKTNTSCHPGCDEDSSRMHVFCLEHAVEVQQQLRSIGGVHILLLCHPDYPRIEDEAKSMAEELGISYLWNDMAFMNATKEDETRIKLALDSEDAIAGNGDWAVKLGINLFYSASLSRSHLYSKQMPYNSVIYKAFGRSSPASSPTRIDVYGRRGGKPKKVVAGKWCGKVWMSNQVHSFLVKRDPEEEVEVAEDEEERPFRAWAMPEEDDEVKSEITRRTEKTVKKYARKRKMTADTRTAKKAKCFEKEDAVSDYSLDDNSHQQQRRLPKSKQAKHIERGRTKKAKGIETHDAFSDDXMQEDDSHQQNGRILHSEQVEYIERSDVSDDSVGIDSHQQHRRTAKSKQFKPVETDVVSDDSFEGSSHQPRRVLRSKTTKCTGRENLISEDVRGFSSHQQRRSISRSKQARARFMEREDTSLDETPEDTSHQHKRNLRNKQTKPETRGKMRQETSRQVKQGTAPLVKQGTRTLRNQQTPQXXKKQTPRLRNNQSEQNNQSEQNSFDLYAEDETEGGPSTRLRKRAPKPSKVPGTKSKEQQQTARKKAKNASAGKTQAGRNETKREEDGEFVCDLEGCTMSFASRHELSLHKRNICPVKGCGKKFFSHKYLVQHRRVHTDDRPLRCPWKGCKMTFKWAWSRTEHIRVHTGARPYVCAEPGCAQTFRFVSDFSRHKRKTGHSAKKSKK