Information report for Lus10043332
Gene Details
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Functional Annotation
- Refseq: XP_024442279.1 — lysine-specific demethylase REF6
- TrEMBL: A0A2K1XK92 — A0A2K1XK92_POPTR; Uncharacterized protein
- STRING: Lus10043332 — (Linum usitatissimum)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Cucumis sativus: Cucsa.391680.1, CsGy1G009140
- Gossypium arboreum: Cotton_A_09671_BGI-A2_v1.0, Cotton_A_18629_BGI-A2_v1.0
- Gossypium hirsutum: Gohir.A09G244800, Gh_A09G2168, Gh_D07G0545, Gh_D09G2376, Gohir.D09G245700, Gohir.D07G058400, Gohir.A07G054000
- Lotus japonicus: Lj0g3v0351959.1
- Manihot esculenta: Manes.14G055900.1.p, MANES_14G055900
- Populus trichocarpa: Potri.015G089000.1, POPTR_015G089000v3
Sequences
CDS Sequence:
- >Lus10043332|Linum_usitatissimum|C2H2|Lus10043332
ATGGCAGCCTCGGGTGGTTTAGCTGCAGAGAGGGAAGATGTGCTTCAATGGCTGAGAAACCTACCGGTAGCACCAGAGTACCACCCAACTCTGGCCGAATTCCAAGATCCCATTGCCTACATTTTCAAAATCGAGAAGGAGGCTTCCAAGTATGGTATCTGCAAAATCGTGCCTCCTGTGCTACAATCCCCCAAGAAGACTGCAATTGCCAACCTCAACCGTTCTCTCGCCGCTCGAGTTGTTGGCGGAGCTTCCTCCTCCTCCTCCCCACCCACATTCACTACCAGGCAGCAGCAGATCGGGTTCTGCCCGAGGAAACCAAGACCCGTTCAGAAGCCCGTGTGGCAGAGCGGGGAGAACTACACTTTCCAGGAGTTCGAGTCTAAGGCCAAGTCTTTCGAAAAATCCTATTTTAAGAAGTATGCGAAGAAAGGGACGACTCTGTCTCCTCTGGAGATCGAAACCCTCTACTGGAAAGCTACTGTCGACAAGCCTTTCTCCGTCGAGTACGCCAATGATATGCCTGGTTCTGCTTTCTCCGTCAAGAAGAATTCTGGGATTGTTGTCGAAGGGATGAGTGTTGGGGAAACTGAGTGGAATATGAGAGGTGTTGCTAGGGCTAAAGGTTCACTGCTTAGGCATATGAAGGAGGAGATTCCTGGTGTCACTTCCCCTATGTTGTATATAGCTATGATGTTTAGCTGGTTCGCTTGGCATGTTGAGGACCACGATTTGCACAGCTTGAACTACATGCACATGGGAGCTGGCAAGACTTGGTATGGTGTCCCCAAGGAGGCTGCTGTTGCTTTTGAGGAGGTCGTCAGGGTTCATGGCTATGGTGGAGAAATCAATCCTCTTCGTGAGTGCTTTTTTCAGCAGAATTCATGTCTTTCTGTTGACCATCTTCGAAGACTGCGTCTGATATTGGTTCATCATATGTTAAAGTTAGTGTCTGTAATGTCTGGACTAATATCATTGTTCTGTACTTCTTGTCAGTTACATTTGCCGTTCTGGGTGAGAAGACCACAGTTATGTCCCCGGAAGTATTCATTAGGGCAGGTGTTCCATGCTGCAGGGTTTAACTGCGGGGAGGCTTCTAATATTGCAACTCCAGAATGGCTGAGATTTGCTAAGGAAGCTGCTGTTAGAAGAGCTTCCATCAATTATCCTCCTATGGTGTCTCATTTTCAGTTACTCTATGATCTTGCATCTGAGTTATGTTCAAGATTTACAACAAACGCTAGTGCTAAGCCAAGGAGTTCTAGACTAAAGGATAAGCAAAAGGGTGAATCGGAAATGGTGACCAAAGAGATTTTAGTGGAAAATGTCATGAATAATAACAACTTACTTCATAATCTTGGAAAAGGGGCCTCAGTTGTTCTTCTTCCCTGGAGTTCTTCAGATATATCTCTCTGCTCAAATTACCGTTTTGGATCACAGTTTGTAAAACCATCATTTGGGTTCCGTGCTCACAAGGGTTTCATGGGACAATCTAAAGTCTCTAGTTATGATGACTCCAAACCAGACAAGATAGATGTGATAAATCAAGTTAAAGGCATGTATCCTCTGAAAGCAAAGTTTGGCTCTTCATACGAAGGCAAGACATGTCCCGTTTTAGGCAAGAGCGGAAACTTGCACAACCCCCACCCAGAAACTGAAAGGATGGCGATGCTTGACAATAAGTCTCCTGATCAGAGACTGTTTTCATGTGTCACCTGTGGAATTTTGAATTATGATTGTGTTGCTATTATTCAACCCAGAGAAGCCGCTGCAAGATACTTCATGTCAGCTGATTGTAGCTTCTTTAATGACTGGACTGTTGTTTCTGGTGCTGGTAAAGAAGCATTCATTGCTGCAGATGAAGATGCAGGAGGGGCTGAGGATAGCATTGCACATGGACCTCATGATATCCTTGAATCTGAAAATAACCACAAACAGATAATCGATCTGAGTAGTGGTGCAGTTTCTGATACTAAACTAAAACTTGAAACGTCAGCACTTGGTCTTTTAGCTTTAAATTATGGAGATTCATCCGACATGGATGAAGAGCCAGGTTTATCTCCCGATAATAATAACACATATGATAGGATGAATAGTTTATCAGAAGGTAACAATCAGTCTCAGGACTCTGCTTCACCATCCTTTGAGGAAGAACTGCCTGATGGTACATCTCGACACAAATTTGATTGCGGGAACAGAGTGTTTCTCCAGGGTGTAGAGAATAATGTGCAACAATTAGAAAATACCGATCCTTTGCTTGCTCCTACATGCGATGAAGACTCTTCCCGTATGCATGTCTTCTGCCTTGAGCATGCTGTTGAAGTAGAACAACGACTTCGCCAAATAGGAGGAGTTCATGTGTTTCTTCTCTGCCATCCAGATTATCCTGGGGTAGAAGAGCAGGCAAAGTTAGTTTCCGAAGAACTGCGGGTTGATTACTTGTGGAAGCAAACGAATTTCAAGGATGCAAGCCTAGATGATGAACAGAGGATCCAATCAGTTCTTGATAGCGAAGAGGCCATTCCAGGGAACAGCGACTGGGCTGTGAAACTGGGGATCAATCTTTTCTACAGTGCTAATCTTAGTTGGTCACCGCTTTATAGTAAGCAGATGGCATACAATTCCGTGATATACAATGCATTTGGCCGCACCTCTCCAGGAAACTCGCCTAAAAAGTCTAATAATGTCTCTGGACGGAGGAACGGTAGGCAGAGAAAGGCAGTGGTTGGTAAATGGTGTGGCAAAGTTTGGATGTCAAATCAAGTCCATCCGTTTCTAACAAATTGGGATTCCCAGTATCAAGACCAGGAGCAAGAACCAGAAAAGCTTGATGTTCAACAACCACAAGTCTTTGAAACAGAAACTTTAAGAAAATCTGTCAAATCTGTGAAGAAAAGAAAACCTAAAGCCAAGAGTGCATCTGTTAGGGAAGTGGCTCTTGCAGAGACTGAGGAGATTCATAAGCCACTCGGGAGGTTAAACAACAGGAAGCGAACAAATTCAGTCGAGGAGCATGAGAGCTTGCATAGAAGCAAGCTGGCCAGATCTGCTGTGAGTGAGTATGTAGATTCTGATGATTCTTTGGGAGACGAATCTCTTCAGCAGCAGCACAAGAAAGCTGTAAGCCAACAAACTAGAGAATTTGTCTGTGAACCTGCAGACTTCTACGACACAGTTCATAAAACCTCTCAAAAACAACGCAGAACTCCTAGAGTCTGTCAGGCTAAATATGTTCAGAAAGAATCTGCTTCAGATGATTCTTTAGAAGAAAACATGCTTCAATGGCATGGAAGGGTTCCTAGAAGTAAGCAACAAATGAAACTAATGGACAGAGAAGAAGTTTCCGGGCTTCCACTAGAAGAGAGTTCTCAGAAATCCCATAAGGTCTATAAAAGGAGAAAGGGAAAATATGCCGAGAAGGAATATGCAGCGCCAAGCGAGTCGACAGAAAATGTTTTTCATAGACAGAACAGCTCGAATCCTGAAGGCAATCAGTTCGAAGAAGCTGAGTTTGATGATTCTCTAGAAGAAAGTGTTAAGTGGCAAACTGCGAGCTTTTCCAGGGAAGATTTAATGTCTGATGATTCAGTGTACAATGATGATGCTCATCAGCAAAGGGGAACTGTTGGAGGCAAAAATCCCTCGTCTTATTCAGCTGAAGATGCAGTATCAGATGATCCGTTAGATACGGATACCCAGCAGCTGGAGAGAACCATTCCTCGAATTGAAAGGTCTAGATCTTTTGGAGATGAAGATGCAGTTTCAGATGACCCGTTGCAGGAGGATGATATGGAACAGAACTTCAGCAGCATCCACCAAAACAAGAGGACCAAATTTGCAGAAAGACAGGAGGATATTACAGATGAGCTGCGAAATAGTAGTACTCGTCGCTATCCAAGGAAGACCCCAAGAGGGAAGCACGGTAGATTCATTAAGGGGGAGATTGAAGATGCAGATTCTGATCATTTGGTGGGAGAGGATTTCAATGAGCAGCAAGGGAGGACACTAGGAAGCAAGCAGAAAAAACATACTAGAGGTCGAACTCCTCCATCGGGGAAGAAGCCTATGCAGAAAGAGACTCCTTTGAGGCCGGTTAAGCTGGAAACTCCTCGCATGAGGAACAAGGGTGTGCAGAAGAATGCTTACCAGTTTGATGATGTCCCGGTCGATGATGATGAAGAAGAGGGTGGACCTAGCTCACGCCTAAGGAGAAGGCCCTCGAAACCTACAAAAGTGTCGATAACTAAATCAAAAGAGATTCAGCAGCAGCAAAGCAGCAGGATTAAAGTGAAGTCTGCTCCGGCTGGGAAGGCCCCTGCTGGACGAAAGGGTGGAAAAAACAAAGTGGAGGATGGACTGTTCCAGTGTGATATTGACGGTTGCACCATGGGTTTTAGCTCAAAGCAAGAGCTCAATGTCCACAAAAGAAACATTTGTCCAGTGAAGGGATGCGGTAAGGTGTTCTTCTCACATAAGTATTTAGTGCAGCATCGACGAGTTCATGTAGACGATAGGCCTCTCAAGTGCCCATGGAAAGGCTGCAAGATGGCGTTCAAGTGGGCATGGGCGAGGACTGAACACATCAGGGTTCACACGGGTGCACGGCCTTACGTGTGTGCAGAAGAAGGTTGCGGTCAGACATTCCGGTTTGTGTCGGATTTCAGCCGTCACAAGAGGAAGACTGGCCATTCAGGCAGGAAAGACAGCGAGTAA
Protein Sequence:
- >Lus10043332|Linum_usitatissimum|C2H2|Lus10043332
MAASGGLAAEREDVLQWLRNLPVAPEYHPTLAEFQDPIAYIFKIEKEASKYGICKIVPPVLQSPKKTAIANLNRSLAARVVGGASSSSSPPTFTTRQQQIGFCPRKPRPVQKPVWQSGENYTFQEFESKAKSFEKSYFKKYAKKGTTLSPLEIETLYWKATVDKPFSVEYANDMPGSAFSVKKNSGIVVEGMSVGETEWNMRGVARAKGSLLRHMKEEIPGVTSPMLYIAMMFSWFAWHVEDHDLHSLNYMHMGAGKTWYGVPKEAAVAFEEVVRVHGYGGEINPLRECFFQQNSCLSVDHLRRLRLILVHHMLKLVSVMSGLISLFCTSCQLHLPFWVRRPQLCPRKYSLGQVFHAAGFNCGEASNIATPEWLRFAKEAAVRRASINYPPMVSHFQLLYDLASELCSRFTTNASAKPRSSRLKDKQKGESEMVTKEILVENVMNNNNLLHNLGKGASVVLLPWSSSDISLCSNYRFGSQFVKPSFGFRAHKGFMGQSKVSSYDDSKPDKIDVINQVKGMYPLKAKFGSSYEGKTCPVLGKSGNLHNPHPETERMAMLDNKSPDQRLFSCVTCGILNYDCVAIIQPREAAARYFMSADCSFFNDWTVVSGAGKEAFIAADEDAGGAEDSIAHGPHDILESENNHKQIIDLSSGAVSDTKLKLETSALGLLALNYGDSSDMDEEPGLSPDNNNTYDRMNSLSEGNNQSQDSASPSFEEELPDGTSRHKFDCGNRVFLQGVENNVQQLENTDPLLAPTCDEDSSRMHVFCLEHAVEVEQRLRQIGGVHVFLLCHPDYPGVEEQAKLVSEELRVDYLWKQTNFKDASLDDEQRIQSVLDSEEAIPGNSDWAVKLGINLFYSANLSWSPLYSKQMAYNSVIYNAFGRTSPGNSPKKSNNVSGRRNGRQRKAVVGKWCGKVWMSNQVHPFLTNWDSQYQDQEQEPEKLDVQQPQVFETETLRKSVKSVKKRKPKAKSASVREVALAETEEIHKPLGRLNNRKRTNSVEEHESLHRSKLARSAVSEYVDSDDSLGDESLQQQHKKAVSQQTREFVCEPADFYDTVHKTSQKQRRTPRVCQAKYVQKESASDDSLEENMLQWHGRVPRSKQQMKLMDREEVSGLPLEESSQKSHKVYKRRKGKYAEKEYAAPSESTENVFHRQNSSNPEGNQFEEAEFDDSLEESVKWQTASFSREDLMSDDSVYNDDAHQQRGTVGGKNPSSYSAEDAVSDDPLDTDTQQLERTIPRIERSRSFGDEDAVSDDPLQEDDMEQNFSSIHQNKRTKFAERQEDITDELRNSSTRRYPRKTPRGKHGRFIKGEIEDADSDHLVGEDFNEQQGRTLGSKQKKHTRGRTPPSGKKPMQKETPLRPVKLETPRMRNKGVQKNAYQFDDVPVDDDEEEGGPSSRLRRRPSKPTKVSITKSKEIQQQQSSRIKVKSAPAGKAPAGRKGGKNKVEDGLFQCDIDGCTMGFSSKQELNVHKRNICPVKGCGKVFFSHKYLVQHRRVHVDDRPLKCPWKGCKMAFKWAWARTEHIRVHTGARPYVCAEEGCGQTFRFVSDFSRHKRKTGHSGRKDSE*