Information report for Lus10041356
Gene Details
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Functional Annotation
- Refseq: XP_027174023.1 — zinc finger protein GAI-ASSOCIATED FACTOR 1-like
- TrEMBL: A0A068U7D2 — A0A068U7D2_COFCA; Uncharacterized protein
- STRING: Lus10041356 — (Linum usitatissimum)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Cajanus cajan: C.cajan_10292
- Capsicum annuum: CA03g08640
- Gossypium arboreum: Cotton_A_13948_BGI-A2_v1.0
- Gossypium hirsutum: Gh_D08G0786, Gh_A08G0678
- Manihot esculenta: Manes.05G065500.1.p
- Nicotiana benthamiana: Niben101Scf02042g03032.1
- Nicotiana tabacum: XP_016475004.1
- Petunia inflata: Peinf101Scf00217g01018.1
- Solanum lycopersicum: Solyc09g074780.2.1
- Solanum melongena: Sme2.5_00123.1_g00002.1
- Ziziphus jujuba: XP_015891908.1
Sequences
CDS Sequence:
- >Lus10041356|Linum_usitatissimum|C2H2|Lus10041356
ATGTCAAACCTGTCAGGTGAAGAAGGCAGCTTCTCCTCCGGAGATGAAGTCCACCATCTCGATAAGCAAGTGCTCCTCAATCACTTTCCGGCCGCGGCACCCAACTCTGCCGCCGCGGCCAATAGCGACGGCTGCGGCCAGCCGCCGGCAAAGAAGAAGCGCAATTTACCAGGCACTCCAGATCCAAGCGCGGAGGTGATGGCGCTGTCACCGACAACATTGATGGCGACGAACCGATTCGTGTGCGAGATATGCAACAAAGGGTTCCAGAGGGATCAGAACCTCCAGCTGCACAGAAGAGGGCACAACCTTCCGTGGAAATTGAAGCAAAGGACGACGACTGAGGTGAGGAAGCGGGTGTACATATGCCCAGAACCCACGTGTGTCCACCACAATCCGGCCCGAGCATTGGGGGACTTGACTGGGATCAAGAAGCATTTCAGCCGTAAACACGGGGAGAAGAAATGGAAGTGCGACAAGTGTTCGAAGAAGTATGCTGTTCAGTCCGATTGGAAAGCTCATCAGAAGACTTGTGGTACTAGGGAGTACAAGTGTGACTGTGGTACCATTTTCTCCAGGAGGGACAGTTTCATAACACACAGAGCATTCTGCGACGCCTTGGCAGAAGAGAACAACAAAGTAAACCAACAAGGCCTTATGTCCAACAACAACAACAACAACCAAATGGCAGACTTAATGTCACCAAACTCATCCTCCGCCGCCGGCGACTTCAACTCCAGCTTCGACCCTAAAAACCCTCTCAAATCCCTCCCTCAAGACCTTATTCCCATGCCTTTCAAGCCCATGAACATGGGCGCCGCTGGAGGCATGTTCTCCACTTCCTCCGGAACCCCCGCCGCGGCCAATAGCGACGGCTGCGGCCAGCCGCCGGCAAAGAAGAAGCGCAATTTACCAGGCACTCCAGATCCAAGCGCGGAGGTGATGGCGCTGTCACCGACAACATTGATGGCGACGAACCGATTCGTGTGCGAGATATGCAACAAAGGGTTCCAGAGGGATCAGAACCTCCAGCTGCACAGAAGAGGGCACAACCTTCCGTGGAAATTGAAGCAAAGGACGACGACTGAGGTGAGGAAGCGGGTGTACATATGCCCAGAACCCACGTGTGTCCACCACAATCCGGCCCGAGCATTGGGGGACTTGACTGGGATCAAGAAGCATTTCAGCCGTAAACACGGGGAGAAGAAATGGAAGTGCGACAAGTGTTCGAAGAAGTATGCTGTTCAGTCCGATTGGAAAGCTCATCAGAAGACTTGTGGTACTAGGGAGTACAAGTGTGACTGTGGTACCATTTTCTCCAGGGTGTTCGACCAACCTGGTTCTGTTATTGAGTGGCGGTCAATGACAATAGCGGAATCATTACGGAGGGACAGTTTCATAACACACAGAGCATTCTGCGACGCCTTGGCAGAAGAGAACAACAAAGTAAACCAACAAGGCCTTATGTCCAACAACAACAACAACAACCAAATGGCAGACTTAATGTCACCAAACTCATCCTCCGCCGCCGGCGACTTCAACTCCAGCTTCGACCCTAAAAACCCTCTCAAATCCCTCCCTCAAGACCTTATTCCCATGCCTTTCAAGCCCATGAACATGGGCGCCGCTGGAGGCATGTTCTCCACTTCCTCCGGAACCCTTTTCGGTGGGCCCCGCGGTGGTGGTAACGGCGGCATGCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGAGCTGTCTGTGTGGGCCCCGGGGGGGGGGGGCGCCGGGGGCCGCCGCCCCCCCACTACCTCCTCCGCCAGCCTCCAGCTCAGCTCCAACGCCGGCGCTTCCTCAGGGTTCAGCGCTTACCTCCAAGACGGCAAAGGTGGAAACTCGGCCGCCGCGCAGATGGCCGGCTCGGCTCACATGTCGGCGACGGCGCTTTTACAGAAAGCCGCCCAGATGGGGGCCACCGCCAGCAACAGCATTAACTCTCCGATGATGCACAAGAGCTTCTCCAGCAGCATCGGCGGAGGTGGGGCATCCGGCTCCCCGACCGGGTTCGGAAACTCAATGCAGAAGACACAGCAGGAGATGTCGCAGATGTTCGACGCGGCCGCAGCTGGCGGCGGGGTGAGCTCGCCGATGATGAACGACATGGGGATGTTCGCCAGCATGTTTATGGCCGGCGGGGATGACCAGGACGGTGTCGGTGGTGGTTTCGGTAGAGGCAACAATGGCGGCAGCGGAGGTAGTAATGGTGGAATGATGGAACGCAGTGGAGGCGGCGGCGGTGGTGGGGGGTCGAGGTTTGGGAATGAAGCGGCGGCCGCTGCCGCGGCAGAGCACGTGATGACACGTGACTTTATGGGGATAGGAGGGGCGAGGCAGCCGGGGAACATGCAAGAGAGGTTTGAGATGGAAGCTGCGTTGACTTTGAGTCAACAACAACAACAACAGCAGCAGCAGCAGCAACAGAGAATGGTTGGCGGCGGGATGATGAATCATTATCAGCAGCAGCAGCCGGCACTGTTGCTTTGGGGATGGGCTGGGGGGGTGGGGGGGGGGGCGTTGTTGGGATTGTCGCTCTCCGTTCGGGTCGATTTGGAGATCTTGCCGGTGTTTGCGGGGTTTGTGTTACGCATGGCTAGGGTGGGCGACAGGTTGGTCGAGGCAGGTTGGAGAGGATGGGAGGTAGGGTGTTGTGGTGTGTTGATCTTCACCCTGACTTGTTCCATCCGATTTGCGTCAGCTAGGGTTTTAAGAAATATAACGATGCATGGAAGATGGTGA
Protein Sequence:
- >Lus10041356|Linum_usitatissimum|C2H2|Lus10041356
MSNLSGEEGSFSSGDEVHHLDKQVLLNHFPAAAPNSAAAANSDGCGQPPAKKKRNLPGTPDPSAEVMALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTTTEVRKRVYICPEPTCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKVNQQGLMSNNNNNNQMADLMSPNSSSAAGDFNSSFDPKNPLKSLPQDLIPMPFKPMNMGAAGGMFSTSSGTPAAANSDGCGQPPAKKKRNLPGTPDPSAEVMALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTTTEVRKRVYICPEPTCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCDCGTIFSRVFDQPGSVIEWRSMTIAESLRRDSFITHRAFCDALAEENNKVNQQGLMSNNNNNNQMADLMSPNSSSAAGDFNSSFDPKNPLKSLPQDLIPMPFKPMNMGAAGGMFSTSSGTLFGGPRGGGNGGMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAELSVWAPGGGGAGGRRPPTTSSASLQLSSNAGASSGFSAYLQDGKGGNSAAAQMAGSAHMSATALLQKAAQMGATASNSINSPMMHKSFSSSIGGGGASGSPTGFGNSMQKTQQEMSQMFDAAAAGGGVSSPMMNDMGMFASMFMAGGDDQDGVGGGFGRGNNGGSGGSNGGMMERSGGGGGGGGSRFGNEAAAAAAAEHVMTRDFMGIGGARQPGNMQERFEMEAALTLSQQQQQQQQQQQQRMVGGGMMNHYQQQQPALLLWGWAGGVGGGALLGLSLSVRVDLEILPVFAGFVLRMARVGDRLVEAGWRGWEVGCCGVLIFTLTCSIRFASARVLRNITMHGRW*