Information report for Lsa016944
Gene Details
Functional Annotation
- Refseq: XP_023763510.1 — protein indeterminate-domain 5, chloroplastic-like
- Refseq: XP_023763512.1 — protein indeterminate-domain 5, chloroplastic-like
- Refseq: XP_023763513.1 — protein indeterminate-domain 5, chloroplastic-like
- TrEMBL: A0A2J6LEE8 — A0A2J6LEE8_LACSA; Uncharacterized protein
- STRING: EOY01198 — (Theobroma cacao)
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Gossypium arboreum: Cotton_A_40713_BGI-A2_v1.0, Cotton_A_20229_BGI-A2_v1.0
- Gossypium hirsutum: Gh_A12G1411
- Manihot esculenta: Manes.17G092200.1.p, Manes.15G141400.2.p, Manes.15G141400.1.p
- Populus trichocarpa: Potri.010G099100.1
- Ricinus communis: 29780.m001361
- Ziziphus jujuba: XP_015894322.1
Sequences
CDS Sequence:
- >Lsa016944|Lactuca_sativa|C2H2|gnl|UG|Lsa#S58693526;PUT-187a-Lactuca_sativa-46530
ATGGCAGCAGCTTCTTCATCAACTTCATTTTATGGGGCAAGATCAGACGAAGAACAACATGTTTCTTCAATACCTACATCTTCTTCAACTATTCAATCAGCAGCAGCTCAACAGAAGAAGAAGAGAAGCCTTCCAGGAACTCCAAATCCAGATGCGGAGGTGATAGCGTTGTCACCAAAGACCCTAATGGCAACAAACCGGTTTATATGTGAAGTATGCAACAAAGGGTTTCAAAGAGAACAAAACTTGCAACTACATAGAAGAGGACACAATCTACCATGGAAGCTAAAGCAAAAAAGCAACAAAGAAGTGAAGAGGAAAGTGTATCTATGTCCAGAGCCTTCATGCGTCCACCATGACCCTTCTCGTGCATTAGGAGACCTCACTGGAATCAAGAAACACTATTCAAGAAAACATGGCGAGAAGAAATACAAGTGCGAGAAGTGCTCCAAGAAATATGCTGTTCAATCCGACTGGAAAGCTCACTCTAAAACTTGTGGCACCCGTGAATATCGATGCGATTGTGGCACCCTTTTCTCAAGGCGTGACAGTTTTATCACGCATCGGGCTTTTTGTGATGCATTAGCTCAAGAAAGTGCAAGGCATCCGTCAGCTCTTGGGTCTATTGGTAGCCATCTTTTTGGAAGCCATCTTAGTAATTCGATGAATTTAGGTCTTTCCCAATTACATGATCAAAACCACCAATCATCAACTACAAACATGTTAAGCCTAGGGAATGCAAACTTCGAGCAAGTTATGCTTCCACCGAGTCAAACACCTCTGTTCCCTCAATCCCAACAGCAACAAATGGCGAATTCATCGTCTCCTTTCTTTTTATCTGATCCAAACCAAGGGTTGAACCAAGTGTTCGATTATGATCAACAAAGCCAACAACATGGGTTAATGGGAAACAAGCCAAACATTCATGGGTTGATGCAACTTCCTGATTTACATAGCAACAACACCAAAATCACTCCTAATCTTTTCAACTTAGGGTTCTTCTCAGGTAATAGTAATCCCACGAATGGTTTGAAAAACAGTGAGAACGATACCCAAAATAACTCGAATATGTCATCTTCTGGTTTCATGCTTCCTGATCATCAATTCAACACCGGAGGTGGAAGTCATGACCACATGTTCCTCAACAGTAATAATCCGCATCAAGAAAGTCCAATGACACCCCACATGTCTGCTACAGCCTTGCTGCAGAAGGCAGCTCAGATGGGTTCTACCACAAGCAACAATAACGCAACCACACTGTTGAAAAGCTTCGGAAGCTCTTCCACGAGCACTGTTGGTGGTGATGCGAAAACACATACAGGTCGCCAAAGTCTATCTGCCACCAGCTTTGATGTTAGAGGAGACCAGTCTTTACAATCGGAGATGGAGAGTGATAATCAGCTACAAGGACTTATGAACACTCTTAGAAGTGGTGGAGCTCCATCTATGTTTGATGGGTATGGAGGGAATCGAAATAGAAACATGAATTTTGGGAACATGAATGAGGCTACCAAGTTTAATCAAAACAACTTCTCTTTAAGCGTTGGAAACTCGAATAGAACGACTCTTGATTTTCTAGGTGTGGGTTACTCGCAGAGAGATCAACAACAACAACAACAACAAACACAAACACAAACACAAACACAACAACCACAGCAGCAACAACAACACCATGGTCGTATCAACATCAGTTCACTGGACCCAAAAATGGATTCATCGTCAACACAGGGAAGTCATGCACATGGTGGATCATCCAAACTGCAAGGAAAATGA
Protein Sequence:
- >Lsa016944|Lactuca_sativa|C2H2|gnl|UG|Lsa#S58693526;PUT-187a-Lactuca_sativa-46530
MAAASSSTSFYGARSDEEQHVSSIPTSSSTIQSAAAQQKKKRSLPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEVKRKVYLCPEPSCVHHDPSRALGDLTGIKKHYSRKHGEKKYKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPSALGSIGSHLFGSHLSNSMNLGLSQLHDQNHQSSTTNMLSLGNANFEQVMLPPSQTPLFPQSQQQQMANSSSPFFLSDPNQGLNQVFDYDQQSQQHGLMGNKPNIHGLMQLPDLHSNNTKITPNLFNLGFFSGNSNPTNGLKNSENDTQNNSNMSSSGFMLPDHQFNTGGGSHDHMFLNSNNPHQESPMTPHMSATALLQKAAQMGSTTSNNNATTLLKSFGSSSTSTVGGDAKTHTGRQSLSATSFDVRGDQSLQSEMESDNQLQGLMNTLRSGGAPSMFDGYGGNRNRNMNFGNMNEATKFNQNNFSLSVGNSNRTTLDFLGVGYSQRDQQQQQQQTQTQTQTQQPQQQQQHHGRINISSLDPKMDSSSTQGSHAHGGSSKLQGK