Information report for Lsa010343
Gene Details
Functional Annotation
- Refseq: XP_023745992.1 — polyadenylation and cleavage factor homolog 4-like isoform X1
- TrEMBL: A0A2J6JP95 — A0A2J6JP95_LACSA; Uncharacterized protein
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Artemisia annua: Aan015184
- Capsicum annuum: T459_31114
- Musa acuminata: GSMUA_Achr11P26100_001
- Panicum virgatum: Pavir.2KG218200.3.p, Pavir.2KG218200.1.p, Pavir.2NG262600.1.p
- Setaria italica: Seita.2G131900.1.p
- Setaria viridis: Sevir.2G137100.1.p
- Solanum lycopersicum: Solyc09g009120.2.1
- Solanum tuberosum: PGSC0003DMG400029413
Sequences
CDS Sequence:
- >Lsa010343|Lactuca_sativa|C2H2|PUT-187a-Lactuca_sativa-47292
ATGGAGATGGACAACACTTCTCGCGGCAGATCATTCGATAGATCATCAAGAAACCCTGCTACACTGAAGAAACCTCGATTGGTAACGGAAGAGCCAACGATTCTTCGCAGTAATAATAATCCCAACGGTAATAATAGACCTATAGTTCAACGGCCGTCAGTGGGGTTCCGGCCGGCGGTGGAGAGAGATGGAGACTCCGAGTCGTATCAGCCACAATCGCTATCTCAGATAAAACAGCAACAACATCAAGAGCTTGTGAGTCAGTATAGGACAGCTCTAGCGGAGCTGACTTTCAATTCCAAACCAATCATAACGAACTTGACTATCATCGCCGGAGAAAACGCCCAGGCTGCCAAAGCTATTGCTGCTACTATCTGCAATAACATTATCGAGGTTCCGAGTGATCAAAAGTTGCCATCGCTATATCTTCTAGACAGTATCGTGAAGAATATTGGGCGAGATTACATCAGACACTTTTCCACCAAACTCCCTGAGGTATTTTGCAAGGCATATAGACAGGTTGATTCTGCATTACATTCTGGAATGCGACATCTTTTTGGGACATGGAAAGGAGTATTTCCACCTCAATCACTCCAATCAATAGAAAAAGAACTTGGTTTTTCAACAGTTGGGAATGGGAATGGGAATGGAAATGTTTCCTCTTCAGGGTTGACCACATCTAGACCTGAGTCACAACCACAACGCCCTGCTCGCAGTATTCATGTAAATCCCAAGTATTTGGAGGCAAGACAAAAACTCCAACAGTCAAACAGGCCAAAAGTTGCAGCCAGTGACATATCCACAACTCGTGCTGATCCTCGCCTAAAATTGCATCAGGCACAAAGAGATCCAGAGAGTGATCTTACAAACGAGAATTATGAATTTGGTTCTGATATATCAAGCCCTTCTGAGGGTAGTTTTGGAAAATCCAATGGAAGAGTAGGAGAACAAGGACTTGAAAAGACATGGTATGGATCTGTGAGCAATACTACAGATACAATATCCAGGCTTGAAAGAAATGGACATACGTTATCATCAAATTATTCACTCCATAAATCTTCAATTCCTGATGTGAAATCACAACCCATCAACAATCTTATAAAAGGAAGTGGTGAAGTGAGTAGGAGTTGGAAGAATTCAGAGGAAGAAGAGTATTTGTGGGATGATGTGAGCTCAAGAACAGTGAATCCTATTCTTACATCTTCCAATAGTTCAAAGAGAGATCCTAGACTGTATTTCGACCCCGATAGACCGGGTTTTGATAATCGTCTTCAGAAATCACAACGGATGCATGAGAAAGAATCTTCACCTGATCTACCATCTGCAGAACAGCGGATACCTTTACCTTCTACTTCACTAAGGGCAAAAGGGTCATTTTCGACAGACGAAAATTCCTTTGTAGGTGCTTCTAGAAACTTATTACATGGTTCTAAAGTTTTCCCTTCCTCTTCAAGTGGGGTGTCAGTGTCAACAAGTCTTGATTCTTTATCCAGAATCTCTTTGCAATCTCTTAAAGCAGCTCGATCTCAGGGGCAAATAAGTCAAGATTCTCAAAAATCAAAACTTCAAAATTTACACCCAATGAAACGCACTCCATTTCCGCCACCTCATCAAGAACCCGTATCAGAACCTTCTGTTCAGTTTCAACCACAACCACAACCCCCTAAACCCTTACCAGTGCCACGTCAGCAAAAACCTGTAGTTGCAGATATACCAGGATTATCATCCACAAGTAGTTTATTAGCTGCTGTTAGCAGCATTTTTGGCAAAAAAACTACTACTCAATCCATGTCATCATCTCTCAAAATCCCATCCTCCCATGAAAGCACATCACTTTCTTCATCTCTTCTTGGTACTACTCCATCAACACAGAGTACAACTCTTCCAAATCCTGAATCAAATGTCTCAAGTCTTTTGAGTACATTGCTCTCAAAGGGTTTAATCTCTGCATCAGAAGACAACAACAACAAAAACAACAATATTAATAACAACAACAATAATAATAACAAAAGTGATGATGTCATTGCTACTCAAACTCCAAAACTTACTCCAAAAGTTTCCTCAAAGAGTGTTGTTATTAATAACAAGAGTGTTGTAGGATTAGAGTTTAAGCCTGATGTGATTAGGGAGTTTAATCCCTGTGTGATTAGTGAGCTAATTGATGATCTTCCACATCAATGTGGGATTTGTGGATTAAGATTCAAAGTTCAAGAACCTTTCGATAATCATATGGAGTGGCATGTGTTAAAAAATTCAGAATCCAACACTCCAAATACCAAATCATCAAGGAGATGGTTTTTGAAAGCTGAAAATTGGGTCAACGGGGAGTCTGATTTTGACTTTGACCCTGGGTCAACTACACAAGAAACATTCTTGATTGATGGTGAACAGATGGTTACTGCAGATGAAACCCAAATTGTGTGTGTTTTGTGTGGAGAAATTTTTGATGATTTTTATAATCAAGAAAGGAATAAATGGATGTTTAAAAGAGCTGCTTATTTAAATATTGGCAATGGTGGGACCCGGGGTGTAATTGTGCATGAAAATTGTGTATCAGTGAATTCGCTTTCTGATTTGGGGTTAGCCAATGATGTGAAAGTGGAAAAGAGTGTATGA
Protein Sequence:
- >Lsa010343|Lactuca_sativa|C2H2|PUT-187a-Lactuca_sativa-47292
MEMDNTSRGRSFDRSSRNPATLKKPRLVTEEPTILRSNNNPNGNNRPIVQRPSVGFRPAVERDGDSESYQPQSLSQIKQQQHQELVSQYRTALAELTFNSKPIITNLTIIAGENAQAAKAIAATICNNIIEVPSDQKLPSLYLLDSIVKNIGRDYIRHFSTKLPEVFCKAYRQVDSALHSGMRHLFGTWKGVFPPQSLQSIEKELGFSTVGNGNGNGNVSSSGLTTSRPESQPQRPARSIHVNPKYLEARQKLQQSNRPKVAASDISTTRADPRLKLHQAQRDPESDLTNENYEFGSDISSPSEGSFGKSNGRVGEQGLEKTWYGSVSNTTDTISRLERNGHTLSSNYSLHKSSIPDVKSQPINNLIKGSGEVSRSWKNSEEEEYLWDDVSSRTVNPILTSSNSSKRDPRLYFDPDRPGFDNRLQKSQRMHEKESSPDLPSAEQRIPLPSTSLRAKGSFSTDENSFVGASRNLLHGSKVFPSSSSGVSVSTSLDSLSRISLQSLKAARSQGQISQDSQKSKLQNLHPMKRTPFPPPHQEPVSEPSVQFQPQPQPPKPLPVPRQQKPVVADIPGLSSTSSLLAAVSSIFGKKTTTQSMSSSLKIPSSHESTSLSSSLLGTTPSTQSTTLPNPESNVSSLLSTLLSKGLISASEDNNNKNNNINNNNNNNNKSDDVIATQTPKLTPKVSSKSVVINNKSVVGLEFKPDVIREFNPCVISELIDDLPHQCGICGLRFKVQEPFDNHMEWHVLKNSESNTPNTKSSRRWFLKAENWVNGESDFDFDPGSTTQETFLIDGEQMVTADETQIVCVLCGEIFDDFYNQERNKWMFKRAAYLNIGNGGTRGVIVHENCVSVNSLSDLGLANDVKVEKSV