Information report for LOC_Os12g18150.1
Gene Details
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Functional Annotation
- Refseq: XP_015620626.1 — lysine-specific demethylase REF6
- TrEMBL: A0A0E0RFZ5 — A0A0E0RFZ5_ORYRU; Uncharacterized protein
- TrEMBL: Q2QTX9 — Q2QTX9_ORYSJ; JmjC domain containing protein, expressed
- STRING: ORUFI12G09490.1 — (Oryza rufipogon)
- STRING: OS12T0279100-01 — (Oryza sativa)
- GO:0009741 — Biological Process — response to brassinosteroid
- GO:0009826 — Biological Process — unidimensional cell growth
- GO:0010228 — Biological Process — vegetative to reproductive phase transition of meristem
- GO:0033169 — Biological Process — histone H3-K9 demethylation
- GO:0035067 — Biological Process — negative regulation of histone acetylation
- GO:0048366 — Biological Process — leaf development
- GO:0005634 — Cellular Component — nucleus
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Brachypodium distachyon: Bradi4g39130.1.p, BRADI_4g39130v3
- Oryza sativa: LOC_Os12g18150
- Panicum virgatum: Pavir.3NG095200.1.p
- Setaria viridis: Sevir.3G311800.1.p, Sevir.3G311800.2.p
Sequences
CDS Sequence:
- >LOC_Os12g18150.1|Oryza_sativa_subsp._japonica|C2H2|LOC_Os12g18150.1
ATGTCGCTGCAGCCGCCGGCGGTGGAGCCGCCGGAGTGGCTGCGGACGCTGCCCGTGGCGCCGGAGTACCACCCGACGCTGGCGGAGTTCGCCGACCCCATCGCCTACATCCTCAGGATCGAGCCGGAGGCGTCCCGCTACGGCATCTGCAAGATCGTGCCCCCGCTCCCGCGGCCCCCCGAGGACGACACCTTCCGCCGCCTCCAGGCCGCCTTCGCCGCCGCGGCCTCCTCCAATGGCGACCCCTCCCCGACCTTCCCCACGCGGCTCCAGCAGGTCGGCCTCTCCGCCAGGAACCGCCGCGCCGCCAGCCGCCGGGTGTGGGAGAGCGGGGAGCGCTACACCCTGGAGGCGTTCCGCGCCAAGGCGGCCGAGTTCGAGCCCCCGAGGCACGCCGCGCCGCCCAGGAACCCCACCCACCTCCAGCTCGAGGCCCTCTTCTGGGCCGCCTGCGCCTCCAGGCCCTTCAGCGTCGAGTACGGCAACGACATGCCCGGCTCCGGCTTCGCCTCCCCCGACGAGCTCCCCGACGCCGCCAATGCCACCGACGTCGGGGAGACGGAGTGGAACATGCGGGTGGCGCCCCGCGCCCGGGGGTCGCTGCTCCGCGCCATGGCCCGCGACGTGGCGGGCGTCACCACCCCGATGCTGTACGTGGCCATGCTCTACAGCTGGTTCGCCTGGCACGTGGAGGACCACGAGCTCCACAGCCTCAACTTCCTCCACTTCGGCAAGGCCAAGACCTGGTACGGCGTCCCCCGCGACGCCATGCTCGCCTTCGAGGAGACGGTGCGCGTCCACGGCTACGCCGACGACCTCAACGCCATCATGGCCTTTCAAACGTTAAATGAGAAGACAACTGTCTTATCTCCTGAGGTGCTTCTTTCTGCTGGTGTTCCCTGCTGCAGATTGGTTCAAAAAGCGGGAGAATTTGTTATCACATTCCCTGGAGCTTATCATTCAGGCTTTAGCCATGGATTTAATTGTGGGGAAGCATCAAATATTGCAACTCCCCATTGGTTACAAGTGGCTAAAGAAGCTGCAATCCGGAGGGCTTCAACTAATTGTGGTCCGATGGTGTCTCATTATCAGCTGCTTTATGAGCTAGCACTCTCATTGCGTCCAAGGGAGCCTAAGAATTTCTATTCTGTTCCAAGAAGCTCACGTTTAAGGGACAAGAATAAGAATGAAGGTGATATAATGGTCAAAGAAAATTTTGTTGGAAGTGTAACCGAAAACAACAATTTGCTTAGCGCCCTTCTGGATAAGAATTCTTGTATAATTGTTCCAAACGCTGATTTCTTCGTTCCATCCTTTCCTGTTGCACTGGAATCTGAAGTTACTGTTAAACAAAGGTTTACAGCTGGTCCCTGCAGTATTAGCCAGCAAGGAGCAGAAAATATGGCTGCTGATCATGTGGCTGTAGACAAGGTTACAGAGATTCAGGACATGAGTGGATCCTTATATCCTTGTGAAACCAGTCTTGTGGGCTGTAGCAATAGAAAACTTTATGAAACAAAATATGGCCAACGGGATGCTGCTGCTTTGTGCTTATCTACTTCAGAGATTCAGAGCAGAGGAATTGATACAGCAAGATCACATCCAGCAGGCGGGATCTTAGATCAAGGACGGTTGCCATGTGTACAGTGCGGAATACTAAGCTTTGCATGTGTAGCCATCATTCAACCTAGAGAAGCAGCAGTACAGTTTATCATGTCTAAAGAGTGCATCTCATCGAGTGCAAAACAAGGAGGAATTGGTGCATCTGATGATACCTCAAACTGGATTGACCAGAGTCATGAGATTAGTCCTCCACCAGGTCCAGCATCTGGAACAGATGATAATGTAAAGCATGCCGTAAGTTTGGCCCATGTCTCTGATCGGTGTAGAGAACTATATGCCAGCAATACAGATGGATGCACCTCTGCTCTTGGGCTTCTAGCTTCTGCATATGACTCATCAGACTCTGATGATGAAACAACTGAGGATGTTTCAAAACATAGCAAGAAAAATGATTCAGTAAACCAAAGCACGGATCCTCAAATCTTGGAAACATCAGCTAGCTGTTCCAGTACAGTTCAGTGTCAAAAGACAAATTCACACTTGCATGAAGAGGAATGTGAGGCAAGAGCCACATCATTGATGAAACCTGTAAGCCATAATAGTAGGCCCATTAGTCAGTCTAACAGGGATACAGATATCGACCATTTTATAGAACTGGGAAAGTCAGGAACACAGTGTTCAGGTTATCTTGATTTGGTTGATGATCTAACTACATCAGTTTTAAAATCCTCTTCAGATACTTGTGTAAGTGCAGCTAAAGCCTCAATGGATCCAGATGTTTTGACCATGCTCAGGTACAATAAAGACTCTTGCAGAATGCATGTGTTTTGTCTTGAACATGCTTTGGAAACATGGACACAGCTTCAACAAATCGGTGGTGCTAATATTATGCTTTTGTGCCATCCAGAATACCCTAGAGCAGAGTCAGCAGCAAAAGTCATAGCAGAAGAACTTGGTATCAAGCATGATTGGAAAGATATCACTTTCAAAGAAGCAACTGAAGAGGACGTTAAAAAGATTCAGTTGGCTTTACAGGATGAAGATGCTGAACCCACTGGCAGTGACTGGGCAGTCAAAATGGGTATCAACATATATTACAGTGCCAAACAGAGCAAATCACCACTTTACAGCAAGCAGATACCATACAATTCCATCATTTATAAGGCATTTGGCCAAGAAAACCCAGACAGTTTGACAGATTATGGATGTCAAAAGTCAGGCTCAACAAAGAAAAAGGTGGCTGGGTGGTGGTGTGGGAAAGTTTGGATGTCAAATCAAGTTCATCCACTTCTAGCTCGTGAGCGTGAAGAACAGAACAGTAGCGTAGTGTACGGCAAAGCAATGTTCACTACTATTTCCCATGGCAAAGTACAAGATGAAGCGTCAACAAGATGCAATACAAGCAACCGAACCCCATCAAGAAGAACATCAAGAAGAAAAAAGGGGGTATCTGCTGAGAAATCTAAACCAAAAAACAAGAGATCCACTGCTTCTGATGAAGCTAGTATGCTTTGCAGTGGCCTTGGAATGAACTCTGGAGTTATCCATGACCAAACTGAAAACTCTGATGATTATGACAAACATGGCAATGGAGATGAAATTGAGGAAGGAACAAATCCTCAGAAATATCAACAACGTAAATTGCAAAACGTGACCAGGAAATCAAGTTCTAAGAAGCGGAAGGATGAGAAAAGAACAGATAGTTTTCATGAACTATATGACGAGGATAATGGTGTGGATTATTGGCTTAACATGGGTAGTGGAGATGATGCCACACTAGGTAACTCTCGACAACAAAGTCCTGATCCAGTGAAAGTGAAATCTGGAGGCAAATTGCAAGGTAAGAGAAAATCTAGCAAGTACAAGTCCAATGATGATTTGTTGAATGAAGAAAATAAGTTACAAAAGATGAACAAAAAATCAAGCTCTAAGAAGCAAAAGAATGATAAGATAAATAGACAACTTCAAGAAGATCAAACCGAAGATGACCATATGGACCACTTAGTTGACGTAGCGGTTGCAGATGAAGTCACACTAGACAATGAGGATAAAATTACAGAAGACAAAATTGATGACGTGAAAGTGAAATCTAGAGGAAAATCGCAAAATGGTAAGAGAAAAGGCAGCAAACATCAGGCTACCGATGGTTTGCGCGCTGGAAATAAAGTGGCCAAATTTCCGTGTGATATAGAAGGATGTGACATGAGCTTCAGTACCCAGCAGGACTTGTTATTGCATAAGCGTGACATTTGTCCTGTCAAAGGATGCAAGAAGAAGTTCTTCTGCCACAAGTACTTGCTTCAGCACCGGAAGGTGCATATAGATGAAAGGCCACTTAAGTGTACATGGAAGGGGTGTAAGAAGGCATTCAAGTGGCCATGGGCGAGGACGGAGCACATGAGAGTCCATACGGGGGTAAGACCTTACGAGTGCCAGGAACCTGGCTGTGGTCAGACATTCCGATTCGTTTCAGATTTCAGCCGCCACAAGAGAAAGACTGGCCATTCCTCTGATAAGAGAAGAAAGAACAGTACATAA
Protein Sequence:
- >LOC_Os12g18150.1|Oryza_sativa_subsp._japonica|C2H2|LOC_Os12g18150.1
MSLQPPAVEPPEWLRTLPVAPEYHPTLAEFADPIAYILRIEPEASRYGICKIVPPLPRPPEDDTFRRLQAAFAAAASSNGDPSPTFPTRLQQVGLSARNRRAASRRVWESGERYTLEAFRAKAAEFEPPRHAAPPRNPTHLQLEALFWAACASRPFSVEYGNDMPGSGFASPDELPDAANATDVGETEWNMRVAPRARGSLLRAMARDVAGVTTPMLYVAMLYSWFAWHVEDHELHSLNFLHFGKAKTWYGVPRDAMLAFEETVRVHGYADDLNAIMAFQTLNEKTTVLSPEVLLSAGVPCCRLVQKAGEFVITFPGAYHSGFSHGFNCGEASNIATPHWLQVAKEAAIRRASTNCGPMVSHYQLLYELALSLRPREPKNFYSVPRSSRLRDKNKNEGDIMVKENFVGSVTENNNLLSALLDKNSCIIVPNADFFVPSFPVALESEVTVKQRFTAGPCSISQQGAENMAADHVAVDKVTEIQDMSGSLYPCETSLVGCSNRKLYETKYGQRDAAALCLSTSEIQSRGIDTARSHPAGGILDQGRLPCVQCGILSFACVAIIQPREAAVQFIMSKECISSSAKQGGIGASDDTSNWIDQSHEISPPPGPASGTDDNVKHAVSLAHVSDRCRELYASNTDGCTSALGLLASAYDSSDSDDETTEDVSKHSKKNDSVNQSTDPQILETSASCSSTVQCQKTNSHLHEEECEARATSLMKPVSHNSRPISQSNRDTDIDHFIELGKSGTQCSGYLDLVDDLTTSVLKSSSDTCVSAAKASMDPDVLTMLRYNKDSCRMHVFCLEHALETWTQLQQIGGANIMLLCHPEYPRAESAAKVIAEELGIKHDWKDITFKEATEEDVKKIQLALQDEDAEPTGSDWAVKMGINIYYSAKQSKSPLYSKQIPYNSIIYKAFGQENPDSLTDYGCQKSGSTKKKVAGWWCGKVWMSNQVHPLLAREREEQNSSVVYGKAMFTTISHGKVQDEASTRCNTSNRTPSRRTSRRKKGVSAEKSKPKNKRSTASDEASMLCSGLGMNSGVIHDQTENSDDYDKHGNGDEIEEGTNPQKYQQRKLQNVTRKSSSKKRKDEKRTDSFHELYDEDNGVDYWLNMGSGDDATLGNSRQQSPDPVKVKSGGKLQGKRKSSKYKSNDDLLNEENKLQKMNKKSSSKKQKNDKINRQLQEDQTEDDHMDHLVDVAVADEVTLDNEDKITEDKIDDVKVKSRGKSQNGKRKGSKHQATDGLRAGNKVAKFPCDIEGCDMSFSTQQDLLLHKRDICPVKGCKKKFFCHKYLLQHRKVHIDERPLKCTWKGCKKAFKWPWARTEHMRVHTGVRPYECQEPGCGQTFRFVSDFSRHKRKTGHSSDKRRKNST*