Information report for LOC_Os04g39520.1
Gene Details
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Functional Annotation
- Refseq: XP_025880741.1 — zinc finger protein 628-like
- TrEMBL: A0A0E0H200 — A0A0E0H200_ORYNI; Uncharacterized protein
- STRING: ONIVA04G13840.1 — (Oryza nivara)
- GO:0046872 — Molecular Function — metal ion binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Brachypodium distachyon: Bradi1g07492.1.p
- Panicum virgatum: Pavir.J271500.1.p, Pavir.7NG239300.1.p
- Setaria italica: Seita.7G132800.1.p
- Setaria viridis: Sevir.7G141400.1.p
- Zea mays: AC185655.3_FGP005, AC215290.3_FGP002, AC185655.3_FGP004
Sequences
CDS Sequence:
- >LOC_Os04g39520.1|Oryza_sativa_subsp._japonica|C2H2|LOC_Os04g39520.1
ATGGCTGCTAGTGGCCAGGTCCAGTGCCTCCTTCCTCTCCGCGTCGCCTTGTCACCGCCGCTGCCGCCGTGGCCGCCGGCGACGATGGTTATGCCACCTCTTCTCGCCGCCGCCGCCGCCATGGCTGCTAGTGGCCAGGTCCGGCGCCTCCTTTCTCTCCGTGCCGCCTTGCCGTCACCATGGCCGCTGGCGACGATGGCTCCTTCCTCTTCTCGCCACCGCCACCATGGCTGCCGGTGCCCAGGCTTCCAGTACGCTTTTGTCAGAGAAAAGGCTGCAGGAGATCACCTGTCACTTGGGTACATGCAGCATGGAGATAATAACAATAAAAAGAAGAAAGGGGATTTGTCCAATAACCTCGATCTCAGCTCATCACCTCTTCTCATGGACTCTCGAGGTCAAGCCTACTACCACAGGGCGGCGGCAGCGGCGGCGGCGGTGGCCGCCGGTGATGCTACTGACGGTGAGGAGCCAGCTGCTGCTGAGCTCGCTCCGAAGGCTGTGAGATCGAAGAAGAAGCTGGCGGTGGAGGCGCAAGGCGGCGCCGCCGTGCGCGATGATCTGACGTGCCCAGAGTGTGGCAAGGTGTTCATGTCGGACAAGGCGATGTACGGACACCTGCGATCTCACCCACTGAGGAAGCACAAGGGGGCGGCGCGCCTGGCGGCGGTGGCGGCGGCGGCGGCCGACGATGCTTCCGTGGCCGCTGGGGTCAAGCCGAGGCCGTGGAAGGTGCCACGGACGAAGGAGGAGGCTGAGCTCGGCGACGACCGCCACCCGGGGAGGTCGCCGGTGACGGGGAAGCGCGGGCGGCCGGCGTCCTCGGCCAGTAGCAGTGGCAGCGCGCCCGCGCCCGCGCCGCCCGCGTCGTCCAGGCTGCAGCTGGTGATCACGGAGGAGGAGGAGGCGGCCATGACTCTCCTGGACATTGCCTCGGGGTGCTCGCTTGATCACCAGCCTACGCAACCGGCGCATGTCGCCGACGCCGCCCTCCTGGCGCCGGCTTCGGACCAGATGCCAAGCGTCGACGTCGAGCAAGGCGTCCTCGCCGTCGCGGAGCACAGGACGTGGGAAGCTGAGAAGCCTGCGCTGGTCGAACATGTCTTTGGGATCGTCAAGGAGCATGTCGCCGCGGTCGCCGCCGACGCCGAGCCGCAGTCGCCGGAGGCGAAGACGCCAGTGAAGCTGGGGCCTGTGACCGATCAGGCTGTCCCTGTTCTCGGCGACAAGAACGACGACGGCCACGCCGACATGCCCGTGTCCCCCGGAGGCGGCACCACCAAGAAGCCTTTGAAGCGAAGACTCCAGGACGTCGAGACGAAGCATCCCACAGCACCGCCACCGCCGCCGGTGAAGCGCATCCCGTCGCCGGCGTCGAAAAGGAAGTACGAGTGTTCGGAGTGCCACAAGACGTTCTCCACTCACCAAGCCCTAGGCGGTCACGTAGCGGCCCACAAGAGGCAGAAGAAGAGCTGCGCCGAGCAGCAGCAAGAGGCGGTGGCGGCGGCGGCGCAAGTCGCGCGGCACAACTTCCTGGCTCACCAGCGCCCGGCCGGCGTCGTCGTCGCCGTCGACGCCACCGTCGTCGCTGCTGCCGGCGGCGGTATCGCCATCGGGCCTCTCGGCGAGGAGGGCTTGGTCGGCCCACCGCCGCCGCCGCCGCCGCCACCGCCGCCGCCCGCACCCGCGCCTGCGCTCGCGCCCGCGCCGCAGCAACACCAGTGCTTACGGTGCCCCATGGTCTTCCCCACCGGGCAGGCTCTCGGCGGCCACATGCGGAAGCATTTTCTCGAGGCCAAGGAGCAGGAGCAGCTGCTCGCCATCGACATCGCCAACGCCAACGCCAACGCCAACGCCAACGCCGCGCCGGGGCCGCCGCCGATGATGGCCAACGCCGCGCCAGTGCCGCCGCCGTCGATGGCCAACGGCGCCGGGCCCGTGCCGCCGCCGATCGCCGTCGCCCCTCCTCCCGCGCCGCCGATCGCCGGAGCCGCTCCTCCTCCGCCCATGGCCAACGGCGCCGCGGCGGCTGCGCCACCGGGGGGCAACCCGGCGCCACCTGCTGGGCCGCAGCCGGGCGTGAACATGTTTGACCTCAACGAGTTGCCCAACGAGGATGCAGGGGAGAACCAGCAACCCTAG
Protein Sequence:
- >LOC_Os04g39520.1|Oryza_sativa_subsp._japonica|C2H2|LOC_Os04g39520.1
MAASGQVQCLLPLRVALSPPLPPWPPATMVMPPLLAAAAAMAASGQVRRLLSLRAALPSPWPLATMAPSSSRHRHHGCRCPGFQYAFVREKAAGDHLSLGYMQHGDNNNKKKKGDLSNNLDLSSSPLLMDSRGQAYYHRAAAAAAAVAAGDATDGEEPAAAELAPKAVRSKKKLAVEAQGGAAVRDDLTCPECGKVFMSDKAMYGHLRSHPLRKHKGAARLAAVAAAAADDASVAAGVKPRPWKVPRTKEEAELGDDRHPGRSPVTGKRGRPASSASSSGSAPAPAPPASSRLQLVITEEEEAAMTLLDIASGCSLDHQPTQPAHVADAALLAPASDQMPSVDVEQGVLAVAEHRTWEAEKPALVEHVFGIVKEHVAAVAADAEPQSPEAKTPVKLGPVTDQAVPVLGDKNDDGHADMPVSPGGGTTKKPLKRRLQDVETKHPTAPPPPPVKRIPSPASKRKYECSECHKTFSTHQALGGHVAAHKRQKKSCAEQQQEAVAAAAQVARHNFLAHQRPAGVVVAVDATVVAAAGGGIAIGPLGEEGLVGPPPPPPPPPPPPAPAPALAPAPQQHQCLRCPMVFPTGQALGGHMRKHFLEAKEQEQLLAIDIANANANANANAAPGPPPMMANAAPVPPPSMANGAGPVPPPIAVAPPPAPPIAGAAPPPPMANGAAAAAPPGGNPAPPAGPQPGVNMFDLNELPNEDAGENQQP*