Information report for LOC_Os03g05690.1
Gene Details
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Functional Annotation
- Refseq: XP_015630480.1 — lysine-specific demethylase SE14-like isoform X1
- Swissprot: Q10RP4 — SE14_ORYSJ; Lysine-specific demethylase SE14
- TrEMBL: A0A0E0GGW9 — A0A0E0GGW9_ORYNI; Uncharacterized protein
- STRING: ONIVA03G03740.2 — (Oryza nivara)
- GO:0006355 — Biological Process — regulation of transcription, DNA-templated
- GO:0009908 — Biological Process — flower development
- GO:0016577 — Biological Process — histone demethylation
- GO:0045814 — Biological Process — negative regulation of gene expression, epigenetic
- GO:0048579 — Biological Process — negative regulation of long-day photoperiodism, flowering
- GO:0055114 — Biological Process — oxidation-reduction process
- GO:0005634 — Cellular Component — nucleus
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0032452 — Molecular Function — histone demethylase activity
- GO:0046872 — Molecular Function — metal ion binding
- GO:0051213 — Molecular Function — dioxygenase activity
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Oryza sativa: LOC_Os03g05690
- Setaria italica: Seita.9G538300.1.p, SETIT_033886mg
- Setaria viridis: Sevir.9G542600.1.p
Sequences
CDS Sequence:
- >LOC_Os03g05690.1|Oryza_sativa_subsp._japonica|C2H2|LOC_Os03g05690.1
ATGGGTCTAAACCTCAAACATAGTTCCAAGATTAGGAAAGAAACACCAGAGAGTCAAGAACAGCCTCCTTTATCATTTTGGGGATTATTTTCCAAGCCATCACCTATTTCAGTTGTTTCAAACTTGAAATGGCTTTGCAGGAAAGCACGGACTCCATATAAGGTCATTGGTTATGCTTCCAGCCCTGATGTTGTGGCAACTCCAGACAAAGTTAAGCCCGCAGTTACAAAAACTCAGATAGACACTTCTGGAAATGCTCATGAAAACATTGGAAGTGAACAAACTCTGCAACAAGATTGTGTCCTGCAAGAATCCAATGATGTAGCTGATATGTGCAAGCGTCCCAAGGTGAATGATCAGGATGGACATTCTCTTATTAATATTCCAATTGCTGTTGCTGAATATCCTATGATGCATCAAGTTTGTGAGCGTCCAGTAAGTGTGAGTGCATGTGATGACCCTATCTGTTCATTTGATTCCCAGGATTCACCCACAACTGTTGCAGTGTCAGCTGGCAAACCTACCAGAGAACAATGTGGTGCTGAATCAACTGAGTTGAGTACTGTAAAACAGTTCCTGGACAATGGGCTTATCGCTGAGGGAGGCAGCATGAACTTCATAAGTAATCATGAGCACTTAGAATCTGACAATGCAACTTCAGTGTGCAAAGATGAACAATTGCAAGTTCAACAAGATCAGTTGGCCATGGTACTTTGTAATAATCCCAACACAGAATTGGTTGCAGGAGAATTACATGGGGGGGCAGCATCATCAACCCTTGAAAATGAGGATAGCTGTGGTAATACGTCTTACTGTTCTGACACTGTATTAAAGAACAGCGAACCTGATACAGATGATCAACCTGAAACATGTGATCGTAGTGTTGTTCTTGTAACACCAAAGTCGAGCTGTGACCAGATGATTTCTAGCAGTGACAGAAGTTGCAGTCTGACCTTGGACTGCCCTGTCTCCACTGATGCTGCCTTTTCAAGCGAAAAGCTGTCTATGGCTCATGATTTGATGGGCAGTGAGTTGCAGGCAGTCCATAATTCAAAGGCTGAGGTTGTGGCCAGTTTGACTGATGTCAAGGGTGCTAAGCTCAATAGCATTCATACCACACAATTACCTCATGAATCTCCAAGCAGTGATTTCATCATTTCAGAAGGTGCGCAATCTGCTTCAACAACTGCAATTCCCAGAAAAAATGGAACATCCATGCACACAGAGTCAAATTCAATTGATATTTTACTTGGAGTTCTAGCCGATGAATCTAAGGTCTCTTCTGGAAAGGATGAGGTTGGCAAAGCTTCCTTGACATTGATGACACTGGCTGGCAATGACCAATCTGCAGATGATGTAACTCAGGATGAAGTTGCAGAGATCACTGATCCGTCGCATGGCTTCTGCTCATCAGACATAGTGTCTAGAAGCATTGGAAGTTCAAACAGAACAAATATCATATGTTATGCCAGACGCAAACACAAAAGAAAGAGCGGATCTGAGTTCAATATTAATAGTCCCCAAAGCTTGGGGAGCTTTGTCCGCTCTCCATGTGAAAGCTTGAGACCAAGGACTAGACCTGCGATTGTTGAAGACATGACAAACGAAACAAAAACTGCAGAAGCTTCAACTGCAAATAAGAGGAAGAAGGCAAAGGTGGAAGCATTTCAGTGTGACATAGAATTTTGTGACATGACATTTGAGACTAAAGCTGAACTTCGTGCTCACCAACGCAATATCTGCACCGACGAGTCTTGTGGCAAGCGCTTCAGCTCTCACAAATACCTGAAGCGTCATCAGTGTGTACACAGAGATGAGAGGCCATTCAAATGCCCCTGGGATGGTTGTCCAATGACTTTCAAGTGGTTGTGGGCGCAAACTGAGCATATCAGAGTCCATACAGGCGAGCGACCGTACAAGTGCTCGGCTCCTGACTGTGGCCAGAGTTTCAGATATGTCTCAGATTATAGTCGCCATAGAAAGAAGTTTAATCATTATTGA
Protein Sequence:
- >LOC_Os03g05690.1|Oryza_sativa_subsp._japonica|C2H2|LOC_Os03g05690.1
MGLNLKHSSKIRKETPESQEQPPLSFWGLFSKPSPISVVSNLKWLCRKARTPYKVIGYASSPDVVATPDKVKPAVTKTQIDTSGNAHENIGSEQTLQQDCVLQESNDVADMCKRPKVNDQDGHSLINIPIAVAEYPMMHQVCERPVSVSACDDPICSFDSQDSPTTVAVSAGKPTREQCGAESTELSTVKQFLDNGLIAEGGSMNFISNHEHLESDNATSVCKDEQLQVQQDQLAMVLCNNPNTELVAGELHGGAASSTLENEDSCGNTSYCSDTVLKNSEPDTDDQPETCDRSVVLVTPKSSCDQMISSSDRSCSLTLDCPVSTDAAFSSEKLSMAHDLMGSELQAVHNSKAEVVASLTDVKGAKLNSIHTTQLPHESPSSDFIISEGAQSASTTAIPRKNGTSMHTESNSIDILLGVLADESKVSSGKDEVGKASLTLMTLAGNDQSADDVTQDEVAEITDPSHGFCSSDIVSRSIGSSNRTNIICYARRKHKRKSGSEFNINSPQSLGSFVRSPCESLRPRTRPAIVEDMTNETKTAEASTANKRKKAKVEAFQCDIEFCDMTFETKAELRAHQRNICTDESCGKRFSSHKYLKRHQCVHRDERPFKCPWDGCPMTFKWLWAQTEHIRVHTGERPYKCSAPDCGQSFRYVSDYSRHRKKFNHY*