Information report for KZV28906.1
Gene Details
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Functional Annotation
- Refseq: XP_002307379.1 — cryptochrome-1 isoform X1
- Refseq: XP_024457693.1 — cryptochrome-1 isoform X2
- Swissprot: Q43125 — CRY1_ARATH; Cryptochrome-1
- TrEMBL: A0A2Z7BAG2 — A0A2Z7BAG2_9LAMI; Cryptochrome 1 family protein
- STRING: POPTR_0005s17100.1 — (Populus trichocarpa)
- GO:0009414 — Biological Process — response to water deprivation
- GO:0009583 — Biological Process — detection of light stimulus
- GO:0009638 — Biological Process — phototropism
- GO:0009640 — Biological Process — photomorphogenesis
- GO:0009644 — Biological Process — response to high light intensity
- GO:0009646 — Biological Process — response to absence of light
- GO:0009785 — Biological Process — blue light signaling pathway
- GO:0010075 — Biological Process — regulation of meristem growth
- GO:0010114 — Biological Process — response to red light
- GO:0010117 — Biological Process — photoprotection
- GO:0010118 — Biological Process — stomatal movement
- GO:0010218 — Biological Process — response to far red light
- GO:0010244 — Biological Process — response to low fluence blue light stimulus by blue low-fluence system
- GO:0010310 — Biological Process — regulation of hydrogen peroxide metabolic process
- GO:0010343 — Biological Process — singlet oxygen-mediated programmed cell death
- GO:0010617 — Biological Process — circadian regulation of calcium ion oscillation
- GO:0042752 — Biological Process — regulation of circadian rhythm
- GO:0046283 — Biological Process — anthocyanin-containing compound metabolic process
- GO:0046777 — Biological Process — protein autophosphorylation
- GO:0051510 — Biological Process — regulation of unidimensional cell growth
- GO:0055114 — Biological Process — oxidation-reduction process
- GO:0060918 — Biological Process — auxin transport
- GO:0071000 — Biological Process — response to magnetism
- GO:0072387 — Biological Process — flavin adenine dinucleotide metabolic process
- GO:1900426 — Biological Process — positive regulation of defense response to bacterium
- GO:1901332 — Biological Process — negative regulation of lateral root development
- GO:1901371 — Biological Process — regulation of leaf morphogenesis
- GO:1901529 — Biological Process — positive regulation of anion channel activity
- GO:1901672 — Biological Process — positive regulation of systemic acquired resistance
- GO:1902347 — Biological Process — response to strigolactone
- GO:1902448 — Biological Process — positive regulation of shade avoidance
- GO:0005737 — Cellular Component — cytoplasm
- GO:0016604 — Cellular Component — nuclear body
- GO:0003676 — Molecular Function — nucleic acid binding
- GO:0004672 — Molecular Function — protein kinase activity
- GO:0005524 — Molecular Function — ATP binding
- GO:0009882 — Molecular Function — blue light photoreceptor activity
- GO:0042803 — Molecular Function — protein homodimerization activity
- GO:0046872 — Molecular Function — metal ion binding
- GO:0071949 — Molecular Function — FAD binding
Family Introduction
- Numerous genes encoding the C2H2 zinc-finger domain have been characterized from a wide variety of eukaryotes, including plants. The canonical ZF (zinc finger) sequence (CX2-4CX3FX5LX2HX3-5H) contains two cysteines and two histidines that coordinate a zinc atom, creating a compact nucleic acid-binding domain. The majority of such proteins characterized to date are DNA-binding transcription factors, and many have been shown to play crucial roles in the development of plants, animals and fungi.
Literature and News
Gene Resources
Homologs
- Actinidia chinensis: CEY00_Acc23944, CEY00_Acc04910
- Capsicum annuum: T459_11927
- Daucus carota: DCAR_008737
- Gossypium hirsutum: Gohir.A05G226100, Gohir.D05G228900
- Manihot esculenta: MANES_02G152400, MANES_18G067300
- Nicotiana attenuata: A4A49_24217
- Populus trichocarpa: POPTR_005G164700v3, POPTR_002G096900v3
- Prunus avium: Pav_sc0000691.1_g620.1.mk
- Prunus persica: PRUPE_1G517600
- Sesamum indicum: SIN_1015727
- Solanum lycopersicum: Solyc04g074180.3
- Vitis vinifera: VIT_18s0001g05680
Sequences
CDS Sequence:
- >KZV28906.1|Dorcoceras_hygrometricum|C2H2|KZV28906.1
ATGTCTGGGGGTGGCTGCAGTATTGTATGGTTTAGGAGGGATCTAAGAGTGGAAGATAATCCAGCATTAGCTGCTGGAGTGAGGGCTGGAGCAGTGATTGCCGTATTCATATGGGCACCTGAAGAAGAAGGGCCTTATTATCCAGGCAGGGTTTCAAGATGGTGGCTGAAGCAGAGTTTAGCACATCTCGATATTTCTTTGAAACGTTTGGGCACTAGTCTTCTCACCAAAAGATCTACAGATAGTGTTTCTTCTCTCCTTGAGATTGTTAAATCCACTGGAGCTACTCAGATCCTTTTCAACCATTTATATGATCCTATATCGTTGGTTCGGGATCATCGAGCAAAGGAAGTTTTGACGGCCCAAGGAGTGGCTGTCCGCTCCTTTAATGCGGACTTGCTGTATGAACCTTGGGAGGTCCATGATCAGGAAGGCCTACCATTCACAACTTTTGCAGGATTTTGGGAAAGATGCCTTAGCATGCCATATGATCCCGAGGCCCCACTTCTCCCACCCAAGAGAATCATTTCTGTTGACATATCTAAATGTGCTTCGGACCCCTTAGTATTCGAAGACGAGTCCGAGAAAGGAAGTAATGCACTTCTTGCTCGAGCTTGGTCTCCTGGCTGGAGCAACGCTGATAAGGCCCTCACCTCATTCATCAACGGTCCACTCATAGAATACTCAAAGAACCGAAGGAAAGCAGATAGCGCTACAACCTCGTTTCTCTCTCCCCATTTACATTTTGGTGAAGTCAGTGTACGGAAGGTCTTCCATTTGGTTCGCAGCAAGCAAGTTCTATGGGCCAATGATGGGAACAAGGCCGGTGAAGAAAGTGTGAACTTATTCCTTAAGAGTATCGGCCTCAGAGAATATTCGAGATATATGAGTTTCAACCATCCTTACAGCCATGAAAGGCCGTTACTTGGGCACCTTAAGTTTTTCCCTTGGGTAGTGGATGAGGGTTACTTTAAGGCATGGAGACAAGGCCGAACGGGATATCCTTTGGTGGATGCTGGCATGAGGGAGCTGTGGGCCAGTGGCTGGCTGCATGATAGGATTCGAGTGGTGGTTTCGAGTTTCTTTGTAAAGGTCCTGCAGCTGCCGTGGAGATGGGGAATGAAGTACTTCTGGGACACCCTTTTGGACGCGGATCTTGAAAGCGATGCTCTTGGTTGGCAGTATATATCAGGGACTCTTCCAGATGGTCGTCAGCTTGATCGCATCGATAACCCACAGTTCGAGGGTTACAAGTTTGACCCAAATGGCGAGTATGTTAGGCGATGGCTTCCTGAACTTGCTAGATTACCTACTGAATGGATACACCACCCTTGGAATGCACCAGAGTCTGTTCTTCAAGCAGCCGGGATCGAGCTTGGTTCCAATTATCCATTACCAATTGTTGAAATCGATGATGCAAAAGCCAGGTTACAGGAAGCACTGTCACAAATGTGGCGAAATGAAGCAGTTTCAAGAGCCGGTAATGGAATGGAAGAAGGACTCGGAGACTCATCTGAATCAACTCCTATTGCGTTTCCTCAAGAAACGGAAGTGGAAATGGAAATGGATAATGATCCAATTCGAAACAACCATATAAATTCAAATATTCGACAGTATGAGGATCAAATGGTCCCAAGCATCACTTCTTTCGTCAGGGTGCAAGACGAAGAGACATCTGTTGATGTTCGAATTTCAGCTGATGAGAGTAGAGCCGAGGTTCCATCAAATGTAAATATGGCAGAGGAACCAAGAAGAGACGCGTTTGGGCGTGTTACTGCAGAAACAGTTAGACCCAACTCTGGTTTTCTACAATTTAACACTACGGGTCGGAGGAATTCTGAAGATTCTACTGCAGAATCATCCAGTGTCAGTAGAAGAGAAAGAGATGGAGGTCTAGTACCGGTTTGGTCTCCCTCGAGTTCAACTTACTCGGAACCATTTGCTGCTGAGGACGGTAGTATTGGAAATGGCCCCTCTTACTCACAAAGGCACCCACAATCTCACCAGCTAATAAACCGGAGGCGGCTTTATCAAACCGGGCCATGGTTGCGCGGAGAAGATGCTGCACTTGCCTTGCAAATTGGCCTTCCCAACCGCGCCTGTGGTTGCTTGGACGATTCAAGTGCTGATGTTGGTGGTATCAAGGATGTAAATCCAGTAGAGCTACTTAGCCAATACTGGATACCTACACCTGAACAAATCTTGGTGGGTTTCACTCATTTCTCCTGCCAAATATGCAAAAAGACCTTCAATCGCTACAACAATCTCCAGATGCACATGTGGGGCCACGGGTCCGAATACCGCCGAGGCCCTAACTCATTGAAAGGGACGCAGCCGAGAGCCATGTTAGGAATCCCATGCTACTGCTACAGAGAAGGATGCAAGCACAATATAAACCACCCCAGAGCCAAGCCCCTCAAGGATTTCAGGACTTTGCAGACTCATCACAAGAGAAAACATGGAATGAAGCGTTTTTCGTGCCGAAAATGCGGCAAGCTTTTGGCCGTTAAAGGAGACTGGAGAACTCACGAGAAGAACTGCGGCAAACGCTGGCTGTGCGTCTGTGGTTCGGACTTCAAACACAAAAGATCACTCAAAGATCATGTCGCGTCGTTCGGTTCAGGTCATGGACCCTCTTTCCCAACCCACTTTTCATAA
Protein Sequence:
- >KZV28906.1|Dorcoceras_hygrometricum|C2H2|KZV28906.1
MSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKQSLAHLDISLKRLGTSLLTKRSTDSVSSLLEIVKSTGATQILFNHLYDPISLVRDHRAKEVLTAQGVAVRSFNADLLYEPWEVHDQEGLPFTTFAGFWERCLSMPYDPEAPLLPPKRIISVDISKCASDPLVFEDESEKGSNALLARAWSPGWSNADKALTSFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRSKQVLWANDGNKAGEESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWASGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGRQLDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDDAKARLQEALSQMWRNEAVSRAGNGMEEGLGDSSESTPIAFPQETEVEMEMDNDPIRNNHINSNIRQYEDQMVPSITSFVRVQDEETSVDVRISADESRAEVPSNVNMAEEPRRDAFGRVTAETVRPNSGFLQFNTTGRRNSEDSTAESSSVSRRERDGGLVPVWSPSSSTYSEPFAAEDGSIGNGPSYSQRHPQSHQLINRRRLYQTGPWLRGEDAALALQIGLPNRACGCLDDSSADVGGIKDVNPVELLSQYWIPTPEQILVGFTHFSCQICKKTFNRYNNLQMHMWGHGSEYRRGPNSLKGTQPRAMLGIPCYCYREGCKHNINHPRAKPLKDFRTLQTHHKRKHGMKRFSCRKCGKLLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHVASFGSGHGPSFPTHFS